assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002140035.1_ASM214003v1	NZ_CP021122	Mycobacteroides abscessus subsp. massiliense strain FLAC047 chromosome, complete genome	1	417012-417109	1	CRISPRCasFinder	no		csa3,DEDDh,c2c9_V-U4,cas3,DinG,cas4,WYL	Orphan	GTGGCGCGGCTCCTGGGGTCTGGGTTCCG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,c2c9_V-U4,cas3,DinG,cas4,WYL	NA|195aa|up_8|NZ_CP021122.1_408894_409479_-,NA|112aa|up_7|NZ_CP021122.1_410150_410486_+,NA|130aa|up_6|NZ_CP021122.1_410522_410912_+,NA|298aa|up_3|NZ_CP021122.1_411768_412662_+,NA|87aa|down_0|NZ_CP021122.1_418053_418314_+,NA|521aa|down_1|NZ_CP021122.1_418376_419939_+,NA|92aa|down_2|NZ_CP021122.1_419935_420211_+,NA|92aa|down_4|NZ_CP021122.1_422300_422576_+,NA|80aa|down_5|NZ_CP021122.1_422568_422808_+,NA|178aa|down_6|NZ_CP021122.1_422800_423334_+,NA|555aa|down_7|NZ_CP021122.1_423335_425000_+,NA|386aa|down_8|NZ_CP021122.1_425088_426246_+,NA|90aa|down_9|NZ_CP021122.1_426736_427006_+	NA|239aa|up_9|NZ_CP021122.1_408030_408747_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|195aa|up_8|NZ_CP021122.1_408894_409479_-	NA	NA|112aa|up_7|NZ_CP021122.1_410150_410486_+	NA	NA|130aa|up_6|NZ_CP021122.1_410522_410912_+	NA	NA|83aa|up_5|NZ_CP021122.1_410949_411198_+	TIGR03429, Tryptophan_dimethylallyltransferase_2, aromatic prenyltransferase, DMATS type	NA|81aa|up_4|NZ_CP021122.1_411444_411687_+	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional	NA|298aa|up_3|NZ_CP021122.1_411768_412662_+	NA	NA|84aa|up_2|NZ_CP021122.1_412661_412913_+	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|671aa|up_1|NZ_CP021122.1_412961_414974_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|334aa|up_0|NZ_CP021122.1_414960_415962_+	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|87aa|down_0|NZ_CP021122.1_418053_418314_+	NA	NA|521aa|down_1|NZ_CP021122.1_418376_419939_+	NA	NA|92aa|down_2|NZ_CP021122.1_419935_420211_+	NA	NA|187aa|down_3|NZ_CP021122.1_420270_420831_+	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|92aa|down_4|NZ_CP021122.1_422300_422576_+	NA	NA|80aa|down_5|NZ_CP021122.1_422568_422808_+	NA	NA|178aa|down_6|NZ_CP021122.1_422800_423334_+	NA	NA|555aa|down_7|NZ_CP021122.1_423335_425000_+	NA	NA|386aa|down_8|NZ_CP021122.1_425088_426246_+	NA	NA|90aa|down_9|NZ_CP021122.1_426736_427006_+	NA
GCF_002140035.1_ASM214003v1	NZ_CP021122	Mycobacteroides abscessus subsp. massiliense strain FLAC047 chromosome, complete genome	2	436584-436789	1,2	PILER-CR,CRISPRCasFinder	no	c2c9_V-U4	csa3,DEDDh,c2c9_V-U4,cas3,DinG,cas4,WYL	Type V-U4	GCCGTCACCCCCGCGCCCGTGGAACGGAC,GCCGTCATCCCCGCGCCCGTGGA	29,23	0	0	NA	NA	NA:NA	3,3	3	TypeV-U4	csa3,DEDDh,c2c9_V-U4,cas3,DinG,cas4,WYL	NA|90aa|up_9|NZ_CP021122.1_426736_427006_+,NA|83aa|up_8|NZ_CP021122.1_427002_427251_+,NA|222aa|up_6|NZ_CP021122.1_428620_429286_+,NA|116aa|up_3|NZ_CP021122.1_432121_432469_+,NA|126aa|up_0|NZ_CP021122.1_436199_436577_+,NA|245aa|down_3|NZ_CP021122.1_439203_439938_+,NA|93aa|down_4|NZ_CP021122.1_439969_440248_-,NA|110aa|down_6|NZ_CP021122.1_441055_441385_-,NA|316aa|down_8|NZ_CP021122.1_441904_442852_-	NA|90aa|up_9|NZ_CP021122.1_426736_427006_+	NA	NA|83aa|up_8|NZ_CP021122.1_427002_427251_+	NA	NA|450aa|up_7|NZ_CP021122.1_427240_428590_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|222aa|up_6|NZ_CP021122.1_428620_429286_+	NA	NA|716aa|up_5|NZ_CP021122.1_429445_431593_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|84aa|up_4|NZ_CP021122.1_431866_432118_+	pfam13936, HTH_38, Helix-turn-helix domain	NA|116aa|up_3|NZ_CP021122.1_432121_432469_+	NA	NA|760aa|up_2|NZ_CP021122.1_432500_434780_+	pfam04147, Nop14, Nop14-like family	NA|433aa|up_1|NZ_CP021122.1_434815_436114_+	COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]	NA|126aa|up_0|NZ_CP021122.1_436199_436577_+	NA	c2c9_V-U4|475aa|down_0|NZ_CP021122.1_436810_438235_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|76aa|down_1|NZ_CP021122.1_438231_438459_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|129aa|down_2|NZ_CP021122.1_438646_439033_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|245aa|down_3|NZ_CP021122.1_439203_439938_+	NA	NA|93aa|down_4|NZ_CP021122.1_439969_440248_-	NA	NA|158aa|down_5|NZ_CP021122.1_440508_440982_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|110aa|down_6|NZ_CP021122.1_441055_441385_-	NA	NA|166aa|down_7|NZ_CP021122.1_441410_441908_-	pfam05901, Excalibur, Excalibur calcium-binding domain	NA|316aa|down_8|NZ_CP021122.1_441904_442852_-	NA	NA|213aa|down_9|NZ_CP021122.1_442848_443487_-	pfam13392, HNH_3, HNH endonuclease
GCF_002140035.1_ASM214003v1	NZ_CP021122	Mycobacteroides abscessus subsp. massiliense strain FLAC047 chromosome, complete genome	3	4313589-4313707	3	CRISPRCasFinder	no		csa3,DEDDh,c2c9_V-U4,cas3,DinG,cas4,WYL	Orphan	TCGTTGATGGCACTGGTGTGGGCACCACCACCGACAGCCGTGCT	44	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,c2c9_V-U4,cas3,DinG,cas4,WYL	NA|129aa|up_4|NZ_CP021122.1_4308118_4308505_-,NA|218aa|up_3|NZ_CP021122.1_4308583_4309237_-,NA|219aa|up_2|NZ_CP021122.1_4309256_4309913_-,NA|200aa|down_5|NZ_CP021122.1_4318777_4319377_-	NA|284aa|up_9|NZ_CP021122.1_4304685_4305537_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|160aa|up_8|NZ_CP021122.1_4305552_4306032_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|312aa|up_7|NZ_CP021122.1_4306173_4307109_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|153aa|up_6|NZ_CP021122.1_4307135_4307594_+	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|169aa|up_5|NZ_CP021122.1_4307618_4308125_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|129aa|up_4|NZ_CP021122.1_4308118_4308505_-	NA	NA|218aa|up_3|NZ_CP021122.1_4308583_4309237_-	NA	NA|219aa|up_2|NZ_CP021122.1_4309256_4309913_-	NA	NA|498aa|up_1|NZ_CP021122.1_4309917_4311411_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|628aa|up_0|NZ_CP021122.1_4311407_4313291_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]	NA|230aa|down_0|NZ_CP021122.1_4315433_4316123_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|294aa|down_1|NZ_CP021122.1_4316119_4317001_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|121aa|down_2|NZ_CP021122.1_4317018_4317381_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|308aa|down_3|NZ_CP021122.1_4317377_4318301_+	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|128aa|down_4|NZ_CP021122.1_4318381_4318765_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|200aa|down_5|NZ_CP021122.1_4318777_4319377_-	NA	NA|607aa|down_6|NZ_CP021122.1_4319558_4321379_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|814aa|down_7|NZ_CP021122.1_4321399_4323841_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|1011aa|down_8|NZ_CP021122.1_4323999_4327032_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|437aa|down_9|NZ_CP021122.1_4327039_4328350_+	PRK09265, PRK09265, aminotransferase AlaT; Validated
GCF_002140035.1_ASM214003v1	NZ_CP021122	Mycobacteroides abscessus subsp. massiliense strain FLAC047 chromosome, complete genome	4	4620310-4620404	4	CRISPRCasFinder	no		csa3,DEDDh,c2c9_V-U4,cas3,DinG,cas4,WYL	Orphan	GCCAGCCCGCTGAACCCCAACAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,c2c9_V-U4,cas3,DinG,cas4,WYL	NA|227aa|up_6|NZ_CP021122.1_4612101_4612782_-,NA|296aa|up_4|NZ_CP021122.1_4613618_4614506_-,NA	NA|502aa|up_9|NZ_CP021122.1_4608492_4609998_+	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only]	NA|306aa|up_8|NZ_CP021122.1_4609994_4610912_+	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase	NA|374aa|up_7|NZ_CP021122.1_4610908_4612030_+	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase	NA|227aa|up_6|NZ_CP021122.1_4612101_4612782_-	NA	NA|177aa|up_5|NZ_CP021122.1_4613026_4613557_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|296aa|up_4|NZ_CP021122.1_4613618_4614506_-	NA	NA|757aa|up_3|NZ_CP021122.1_4614624_4616895_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|140aa|up_2|NZ_CP021122.1_4617331_4617751_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|201aa|up_1|NZ_CP021122.1_4617740_4618343_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|530aa|up_0|NZ_CP021122.1_4618386_4619976_-	PRK06188, PRK06188, acyl-CoA synthetase; Validated	NA|366aa|down_0|NZ_CP021122.1_4620466_4621564_-	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family	NA|222aa|down_1|NZ_CP021122.1_4621615_4622281_+	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|283aa|down_2|NZ_CP021122.1_4622290_4623139_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|287aa|down_3|NZ_CP021122.1_4623143_4624004_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|264aa|down_4|NZ_CP021122.1_4624095_4624887_+	PRK07814, PRK07814, SDR family oxidoreductase	NA|358aa|down_5|NZ_CP021122.1_4624899_4625973_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|197aa|down_6|NZ_CP021122.1_4625969_4626560_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|418aa|down_7|NZ_CP021122.1_4626682_4627936_+	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2	NA|161aa|down_8|NZ_CP021122.1_4627866_4628349_+	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|355aa|down_9|NZ_CP021122.1_4628414_4629479_+	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
