assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002142615.1_ASM214261v1	NZ_CP021152	Photobacterium damselae subsp. damselae strain KC-Na-1 chromosome II, complete sequence	1	246163-246610	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas3,RT,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j,cas2,csa3,DEDDh	Type I-F	CTTCACTGCCGAGTAGGCAGCTTAGAAA,CTTCACTGCCGAGTAGGCAGCTTAGAAA,CTTCACTGCCGAGTAGGCAGCTTAGAAA	28,28,28	4	5	246191-246222|246251-246282|246251-246282|246311-246342|246491-246522	NZ_CP021155.1_58692-58723|NZ_CP021155.1_51948-51979|NZ_CP021153.1_16762-16793|NZ_CP021154.1_47411-47380|NZ_CP021156.1_30244-30275	I-F:I-F:I-F	7,7,7	7	TypeI-F	DEDDh,RT,cas3,csa3,cas14j,DinG,csx1,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2	NA|50aa|up_2|NZ_CP021152.1_244036_244186_+,NA	NA|166aa|up_9|NZ_CP021152.1_235381_235879_+	pfam04970, LRAT, Lecithin retinol acyltransferase	NA|173aa|up_8|NZ_CP021152.1_235873_236392_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|351aa|up_7|NZ_CP021152.1_236558_237611_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|339aa|up_6|NZ_CP021152.1_238583_239600_+	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|449aa|up_5|NZ_CP021152.1_239822_241169_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|181aa|up_4|NZ_CP021152.1_241381_241924_-	COG3266, DamX, Uncharacterized protein conserved in bacteria [Function unknown]	NA|128aa|up_3|NZ_CP021152.1_242229_242613_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|50aa|up_2|NZ_CP021152.1_244036_244186_+	NA	NA|265aa|up_1|NZ_CP021152.1_244226_245021_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|160aa|up_0|NZ_CP021152.1_245119_245599_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|253aa|down_0|NZ_CP021152.1_246711_247470_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|348aa|down_1|NZ_CP021152.1_247456_248500_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas1|325aa|down_2|NZ_CP021152.1_248802_249777_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1111aa|down_3|NZ_CP021152.1_249773_253106_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|434aa|down_4|NZ_CP021152.1_253121_254423_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|319aa|down_5|NZ_CP021152.1_254422_255379_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|330aa|down_6|NZ_CP021152.1_255386_256376_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_7|NZ_CP021152.1_256377_256932_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|138aa|down_8|NZ_CP021152.1_257363_257777_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|317aa|down_9|NZ_CP021152.1_257829_258780_-	COG2855, COG2855, Predicted membrane protein [Function unknown]
GCF_002142615.1_ASM214261v1	NZ_CP021152	Photobacterium damselae subsp. damselae strain KC-Na-1 chromosome II, complete sequence	2	257070-257278	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas3,RT,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas14j,cas2,csa3,DEDDh	Type I-F	CTTCACTGCCGAGTAGGCAGCTTAGAAAT,CTTCACTGCCGAGTAGGCAGCTTAGAAAT,CTTCACTGCCGAGTAGGCAGCTTAGAAAT	29,29,29	2	2	257099-257129|257159-257189	NZ_CP021155.1_61387-61417|NZ_CP021155.1_50708-50678	I-F:I-F:I-F	2,3,3	3	TypeI-F	DEDDh,RT,cas3,csa3,cas14j,DinG,csx1,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2	NA,NA|110aa|down_5|NZ_CP021152.1_263119_263449_-	NA|265aa|up_9|NZ_CP021152.1_244226_245021_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|160aa|up_8|NZ_CP021152.1_245119_245599_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|253aa|up_7|NZ_CP021152.1_246711_247470_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|348aa|up_6|NZ_CP021152.1_247456_248500_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas1|325aa|up_5|NZ_CP021152.1_248802_249777_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1111aa|up_4|NZ_CP021152.1_249773_253106_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|434aa|up_3|NZ_CP021152.1_253121_254423_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|319aa|up_2|NZ_CP021152.1_254422_255379_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|330aa|up_1|NZ_CP021152.1_255386_256376_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP021152.1_256377_256932_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|138aa|down_0|NZ_CP021152.1_257363_257777_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|317aa|down_1|NZ_CP021152.1_257829_258780_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|108aa|down_2|NZ_CP021152.1_258941_259265_-	pfam07027, DUF1318, Protein of unknown function (DUF1318)	NA|70aa|down_3|NZ_CP021152.1_259282_259492_-	pfam13617, Lipoprotein_19, YnbE-like lipoprotein	NA|1093aa|down_4|NZ_CP021152.1_259573_262852_-	pfam11739, DctA-YdbH, Dicarboxylate transport	NA|110aa|down_5|NZ_CP021152.1_263119_263449_-	NA	NA|900aa|down_6|NZ_CP021152.1_263813_266513_-	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|170aa|down_7|NZ_CP021152.1_266634_267144_-	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown]	NA|196aa|down_8|NZ_CP021152.1_267323_267911_+	COG3266, DamX, Uncharacterized protein conserved in bacteria [Function unknown]	NA|185aa|down_9|NZ_CP021152.1_268087_268642_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates
GCF_002142615.1_ASM214261v1	NZ_CP021151	Photobacterium damselae subsp. damselae strain KC-Na-1 chromosome I, complete sequence	1	2206884-2207033	1	CRISPRCasFinder	no	cas14j	DEDDh,RT,cas3,csa3,cas14j,DinG,csx1	Unclear	CCTAAAACTAATATCTGCTCTAGCTTTTCCCTTTTTTCCTAAAAAC	46	0	0	NA	NA	NA	1	1	TypeV	DEDDh,RT,cas3,csa3,cas14j,DinG,csx1,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2	NA|219aa|up_4|NZ_CP021151.1_2203021_2203678_-,NA|121aa|down_3|NZ_CP021151.1_2210755_2211118_-	NA|321aa|up_9|NZ_CP021151.1_2196983_2197946_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|395aa|up_8|NZ_CP021151.1_2197951_2199136_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|325aa|up_7|NZ_CP021151.1_2199151_2200126_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|399aa|up_6|NZ_CP021151.1_2200277_2201474_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|333aa|up_5|NZ_CP021151.1_2201454_2202453_-	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|219aa|up_4|NZ_CP021151.1_2203021_2203678_-	NA	NA|242aa|up_3|NZ_CP021151.1_2203682_2204408_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|360aa|up_2|NZ_CP021151.1_2204667_2205747_-	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional	NA|91aa|up_1|NZ_CP021151.1_2205898_2206171_-	pfam08891, YfcL, YfcL protein	NA|184aa|up_0|NZ_CP021151.1_2206193_2206745_-	pfam04315, EpmC, Elongation factor P hydroxylase	NA|212aa|down_0|NZ_CP021151.1_2207165_2207801_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|363aa|down_1|NZ_CP021151.1_2208182_2209271_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|403aa|down_2|NZ_CP021151.1_2209527_2210736_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|121aa|down_3|NZ_CP021151.1_2210755_2211118_-	NA	NA|285aa|down_4|NZ_CP021151.1_2211074_2211929_-	pfam02253, PLA1, Phospholipase A1	NA|400aa|down_5|NZ_CP021151.1_2212196_2213396_-	PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional	NA|202aa|down_6|NZ_CP021151.1_2213757_2214363_+	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|403aa|down_7|NZ_CP021151.1_2214397_2215606_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1036aa|down_8|NZ_CP021151.1_2216149_2219257_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|370aa|down_9|NZ_CP021151.1_2219256_2220366_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit
GCF_002142615.1_ASM214261v1	NZ_CP021151	Photobacterium damselae subsp. damselae strain KC-Na-1 chromosome I, complete sequence	2	2482077-2482734	1	PILER-CR	no	RT	DEDDh,RT,cas3,csa3,cas14j,DinG,csx1	Unclear	CGGGAGGATTCGAACCTCCGACCGCCTGGTTCGTAGCCAGGTACTCTATCCAGCTGAGCTACG	63	0	0	NA	NA	NA	5	5	Orphan	DEDDh,RT,cas3,csa3,cas14j,DinG,csx1,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2	NA,NA	NA|456aa|up_9|NZ_CP021151.1_2468704_2470072_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|266aa|up_8|NZ_CP021151.1_2470273_2471071_+	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|426aa|up_7|NZ_CP021151.1_2471113_2472391_+	PRK11573, PRK11573, hypothetical protein; Provisional	NA|172aa|up_6|NZ_CP021151.1_2472494_2473010_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|204aa|up_5|NZ_CP021151.1_2473048_2473660_-	COG4764, COG4764, Uncharacterized protein conserved in bacteria [Function unknown]	RT|437aa|up_4|NZ_CP021151.1_2473742_2475053_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|522aa|up_3|NZ_CP021151.1_2475672_2477238_-	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|949aa|up_2|NZ_CP021151.1_2477392_2480239_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|149aa|up_1|NZ_CP021151.1_2480251_2480698_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|318aa|up_0|NZ_CP021151.1_2480718_2481672_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|66aa|down_0|NZ_CP021151.1_2484070_2484268_-	PRK01712, PRK01712, carbon storage regulator CsrA	NA|399aa|down_1|NZ_CP021151.1_2484351_2485548_-	PRK08841, PRK08841, aspartate kinase; Validated	NA|874aa|down_2|NZ_CP021151.1_2485605_2488227_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|411aa|down_3|NZ_CP021151.1_2488503_2489736_-	PRK10537, PRK10537, voltage-gated potassium channel protein	NA|352aa|down_4|NZ_CP021151.1_2489924_2490980_-	PRK09354, recA, recombinase A; Provisional	NA|163aa|down_5|NZ_CP021151.1_2491117_2491606_-	PRK03661, PRK03661, nicotinamide-nucleotide amidase	NA|868aa|down_6|NZ_CP021151.1_2491818_2494422_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|334aa|down_7|NZ_CP021151.1_2494571_2495573_-	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated	NA|279aa|down_8|NZ_CP021151.1_2495626_2496463_-	PRK10871, nlpD, murein hydrolase activator NlpD	NA|210aa|down_9|NZ_CP021151.1_2496466_2497096_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCF_002142615.1_ASM214261v1	NZ_CP021153	Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid pPDD-Na-1-1, complete sequence	1	10315-10567	1	PILER-CR	no			Orphan	TTACCCAATCAGCGTACACC	20	0	0	NA	NA	NA	4	4	Orphan	DEDDh,RT,cas3,csa3,cas14j,DinG,csx1,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2	NA|142aa|up_4|NZ_CP021153.1_5345_5771_+,NA|93aa|up_3|NZ_CP021153.1_5841_6120_+,NA|107aa|up_1|NZ_CP021153.1_8732_9053_-,NA|291aa|down_0|NZ_CP021153.1_10596_11469_-,NA|148aa|down_3|NZ_CP021153.1_15406_15850_+,NA|66aa|down_6|NZ_CP021153.1_17846_18044_-,NA|97aa|down_7|NZ_CP021153.1_18077_18368_-,NA|107aa|down_9|NZ_CP021153.1_19535_19856_-	NA|NA	NA	NA|NA	NA	NA|72aa|up_7|NZ_CP021153.1_1730_1946_-	PRK10328, PRK10328, DNA-binding protein StpA	NA|530aa|up_6|NZ_CP021153.1_2221_3811_+	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family	NA|453aa|up_5|NZ_CP021153.1_3908_5267_+	pfam12588, PSDC, Phophatidylserine decarboxylase	NA|142aa|up_4|NZ_CP021153.1_5345_5771_+	NA	NA|93aa|up_3|NZ_CP021153.1_5841_6120_+	NA	NA|368aa|up_2|NZ_CP021153.1_6700_7804_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|107aa|up_1|NZ_CP021153.1_8732_9053_-	NA	NA|259aa|up_0|NZ_CP021153.1_9071_9848_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|291aa|down_0|NZ_CP021153.1_10596_11469_-	NA	NA|335aa|down_1|NZ_CP021153.1_12231_13236_+	pfam05992, SbmA_BacA, SbmA/BacA-like family	NA|707aa|down_2|NZ_CP021153.1_13243_15364_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|148aa|down_3|NZ_CP021153.1_15406_15850_+	NA	NA|124aa|down_4|NZ_CP021153.1_16089_16461_+	COG2916, Hns, DNA-binding protein H-NS [General function prediction only]	NA|195aa|down_5|NZ_CP021153.1_17117_17702_-	pfam11140, DUF2913, Protein of unknown function (DUF2913)	NA|66aa|down_6|NZ_CP021153.1_17846_18044_-	NA	NA|97aa|down_7|NZ_CP021153.1_18077_18368_-	NA	NA|225aa|down_8|NZ_CP021153.1_18833_19508_-	pfam01051, Rep_3, Initiator Replication protein	NA|107aa|down_9|NZ_CP021153.1_19535_19856_-	NA
