assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002157245.1_ASM215724v1	NZ_CP021179	Escherichia coli strain 81009 chromosome, complete genome	1	2909013-2909136	1	CRISPRCasFinder	no	DEDDh	cas3,c2c9_V-U4,csa3,DEDDh,DinG,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,DinG,RT	NA,NA|30aa|down_7|NZ_CP021179.1_2918032_2918122_+	NA|471aa|up_9|NZ_CP021179.1_2898465_2899878_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP021179.1_2900434_2900644_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP021179.1_2901099_2901726_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP021179.1_2901746_2903849_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP021179.1_2903861_2904500_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP021179.1_2904563_2905232_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP021179.1_2905228_2906014_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP021179.1_2906017_2906830_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP021179.1_2906841_2908446_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP021179.1_2908571_2908877_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP021179.1_2909450_2910707_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP021179.1_2910747_2912121_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP021179.1_2912335_2912977_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP021179.1_2913016_2914165_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP021179.1_2914455_2915667_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP021179.1_2915779_2916712_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP021179.1_2916708_2917734_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP021179.1_2918032_2918122_+	NA	NA|390aa|down_8|NZ_CP021179.1_2918287_2919457_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP021179.1_2919602_2920184_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002157245.1_ASM215724v1	NZ_CP021179	Escherichia coli strain 81009 chromosome, complete genome	2	3588720-3588811	2	CRISPRCasFinder	no		cas3,c2c9_V-U4,csa3,DEDDh,DinG,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,DinG,RT	NA|70aa|up_9|NZ_CP021179.1_3577970_3578180_-,NA	NA|70aa|up_9|NZ_CP021179.1_3577970_3578180_-	NA	NA|1321aa|up_8|NZ_CP021179.1_3578234_3582197_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP021179.1_3582236_3582875_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP021179.1_3583162_3584254_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP021179.1_3584253_3584946_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP021179.1_3584957_3585344_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP021179.1_3585351_3586152_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP021179.1_3586161_3586752_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP021179.1_3586762_3587257_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP021179.1_3587277_3588606_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP021179.1_3589234_3589831_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP021179.1_3589851_3590079_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP021179.1_3590116_3591358_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP021179.1_3591892_3592813_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP021179.1_3592812_3593118_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP021179.1_3593372_3593972_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP021179.1_3593968_3596515_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP021179.1_3596514_3597687_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP021179.1_3597816_3598509_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP021179.1_3598481_3599510_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_002157245.1_ASM215724v1	NZ_CP021179	Escherichia coli strain 81009 chromosome, complete genome	3	3747510-3747592	3	CRISPRCasFinder	no		cas3,c2c9_V-U4,csa3,DEDDh,DinG,RT	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,DinG,RT	NA,NA	NA|431aa|up_9|NZ_CP021179.1_3732507_3733800_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP021179.1_3733890_3735234_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP021179.1_3735244_3735856_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP021179.1_3736014_3740121_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP021179.1_3740255_3740750_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP021179.1_3741293_3742259_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP021179.1_3742381_3744148_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP021179.1_3744148_3745870_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP021179.1_3745911_3746616_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP021179.1_3746900_3747119_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP021179.1_3747803_3750080_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP021179.1_3750110_3750431_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP021179.1_3750753_3750978_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP021179.1_3751050_3752997_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP021179.1_3752993_3754109_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP021179.1_3754259_3755216_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP021179.1_3755212_3756871_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP021179.1_3757295_3757991_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP021179.1_3758405_3759305_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP021179.1_3759448_3761101_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002157245.1_ASM215724v1	NZ_CP021179	Escherichia coli strain 81009 chromosome, complete genome	4	4633515-4633647	1	PILER-CR	no		cas3,c2c9_V-U4,csa3,DEDDh,DinG,RT	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,DinG,RT	NA,NA|73aa|down_7|NZ_CP021179.1_4641594_4641813_+	NA|95aa|up_9|NZ_CP021179.1_4624916_4625201_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP021179.1_4625203_4625437_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP021179.1_4625522_4626002_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP021179.1_4626193_4628056_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP021179.1_4628048_4628579_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP021179.1_4628686_4630018_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP021179.1_4630076_4630364_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP021179.1_4630360_4631647_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP021179.1_4631697_4632639_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP021179.1_4632653_4633424_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP021179.1_4633896_4635411_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP021179.1_4635441_4636584_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP021179.1_4636712_4637930_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP021179.1_4638002_4639556_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP021179.1_4639664_4640450_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP021179.1_4640455_4641046_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP021179.1_4641164_4641560_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|NZ_CP021179.1_4641594_4641813_+	NA	NA|1074aa|down_8|NZ_CP021179.1_4641820_4645042_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP021179.1_4645059_4646208_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
