The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018802	Histophilus somni strain USDA-ARS-USMARC-63250 chromosome, complete genome	2110642	365732	419440	2110642	integrase,protease,transposase,terminase,capsid	Mannheimia_phage(41.38%)	55	369881:369898	399390:399407
WP_075293630.1|365732_366977_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.0	6.3e-127
WP_075293629.1|366992_367574_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	62.9	9.0e-60
WP_075293628.1|367659_368958_-	trigger factor	NA	NA	NA	NA	NA
WP_075293701.1|369340_370732_+	type II/IV secretion system protein	NA	NA	NA	NA	NA
369881:369898	attL	TTGGATATAAGCGAAACA	NA	NA	NA	NA
WP_012341088.1|370765_372025_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_075293627.1|372094_372892_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_075293626.1|373041_374418_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_075293625.1|374460_376200_-	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.9	5.1e-34
WP_075293624.1|376656_377898_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	41.5	8.8e-89
WP_011609578.1|377859_378045_-	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	43.6	1.7e-09
WP_075293623.1|378057_378852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293622.1|378883_380071_-	DNA cytosine methyltransferase	NA	A0A2I7R2G4	Vibrio_phage	46.5	1.6e-95
WP_075293621.1|380099_380828_-	hypothetical protein	NA	A0A0M3LPL3	Mannheimia_phage	60.2	9.0e-17
WP_087449173.1|380833_381874_-	hypothetical protein	NA	A0A0M3LPL3	Mannheimia_phage	68.6	2.8e-11
WP_075293619.1|381923_382592_-	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	74.0	6.4e-94
WP_075293618.1|382584_383520_-	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	76.9	7.0e-131
WP_011609572.1|383531_383831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293617.1|383827_384265_-	hypothetical protein	NA	A0A0M3LSK4	Mannheimia_phage	45.6	3.6e-05
WP_075293616.1|384261_384546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087437307.1|384632_385340_-	KilA-N domain-containing protein	NA	K7PH30	Enterobacteria_phage	46.6	2.9e-20
WP_087437242.1|386320_386743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293616.1|386739_387024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087449174.1|387110_387770_-	hypothetical protein	NA	B6SCX2	Bacteriophage	53.2	1.0e-27
WP_075293614.1|388420_388639_+	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	79.2	8.1e-22
WP_075293613.1|388662_389685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293612.1|389825_390314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293611.1|390443_390860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293610.1|390856_391036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293609.1|391267_391459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293608.1|391866_392424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293607.1|392435_393380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609560.1|393688_394324_-	LexA family transcriptional repressor	NA	G9L676	Escherichia_phage	45.6	7.8e-41
WP_011609559.1|394462_394669_+	helix-turn-helix transcriptional regulator	NA	A0A0N7C2U7	Escherichia_phage	50.0	4.9e-13
WP_011609558.1|394713_395166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087449175.1|395208_395457_+	hypothetical protein	NA	A0A0M3LR73	Mannheimia_phage	72.2	3.5e-21
WP_075293605.1|396241_396934_+	replication protein P	NA	A0A077KCC8	Edwardsiella_phage	34.6	1.9e-24
WP_075293604.1|396943_397474_+	phage N-6-adenine-methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	67.2	4.8e-68
WP_075293603.1|397510_398137_+	DUF1367 family protein	NA	K7PKS6	Enterobacteria_phage	28.1	3.1e-18
WP_075293602.1|398149_398428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293601.1|398506_399094_+	recombination protein NinG	NA	A0A0M3LTG3	Mannheimia_phage	55.1	1.7e-50
WP_075293600.1|399083_399488_+	hypothetical protein	NA	NA	NA	NA	NA
399390:399407	attR	TTGGATATAAGCGAAACA	NA	NA	NA	NA
WP_075293599.1|399638_400478_+	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	52.6	1.6e-73
WP_075319826.1|400746_401163_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	63.5	7.4e-48
WP_075319827.1|401209_402346_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	56.4	2.6e-119
WP_012341704.1|402634_402871_+	hypothetical protein	NA	A0A0M3LR95	Mannheimia_phage	70.5	2.7e-23
WP_075294024.1|402860_403400_+	lysozyme	NA	Q19UR6	Mannheimia_phage	49.7	9.9e-45
WP_075294034.1|403372_403699_+	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
WP_041604566.1|403727_403871_+	hypothetical protein	NA	A0A0M3LNX0	Mannheimia_phage	69.8	9.9e-13
WP_075294025.1|403895_404591_+|terminase	terminase	terminase	NA	NA	NA	NA
WP_011609539.1|404590_406138_+	hypothetical protein	NA	A0A1B1IVN4	uncultured_Mediterranean_phage	42.0	6.4e-97
WP_075294026.1|406139_408317_+	hypothetical protein	NA	S4S2T1	Puniceispirillum_phage	25.9	3.4e-43
WP_011609534.1|416895_417198_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_011609533.1|417295_417478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341716.1|417555_418419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075294028.1|418444_419440_+|capsid	N4-gp56 family major capsid protein	capsid	NA	NA	NA	NA
>prophage 2
NZ_CP018802	Histophilus somni strain USDA-ARS-USMARC-63250 chromosome, complete genome	2110642	464052	521009	2110642	protease,integrase,transposase	Escherichia_phage(16.67%)	56	489494:489510	508040:508056
WP_075319814.1|464052_464469_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	64.2	1.5e-48
WP_075319813.1|464515_465652_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	53.7	5.2e-112
WP_075293400.1|465907_466837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293401.1|466855_467302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293402.1|467519_467852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157665519.1|468004_468145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293403.1|468221_468869_-	DUF3560 domain-containing protein	NA	NA	NA	NA	NA
WP_075293405.1|469451_469868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293406.1|469966_470185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293407.1|470308_470773_-	DUF3577 domain-containing protein	NA	NA	NA	NA	NA
WP_075293408.1|471535_473566_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	31.2	1.2e-47
WP_041604434.1|473567_473855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609878.1|473949_474672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293409.1|474957_475209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293410.1|475205_476102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293411.1|476213_476693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293412.1|477593_478808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293413.1|478920_479313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293458.1|480160_481000_+	ThiF family adenylyltransferase	NA	NA	NA	NA	NA
WP_075293414.1|480983_481988_+	patatin-like phospholipase family protein	NA	A0A1B2LRS3	Wolbachia_phage	27.6	1.2e-19
WP_075293415.1|482609_483032_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_075293416.1|483084_483585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293417.1|483587_483785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293459.1|483958_484420_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_075293418.1|484782_485193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293419.1|485194_487222_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_075293460.1|487224_488547_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
489494:489510	attL	TAATGTTTTATGATTTT	NA	NA	NA	NA
WP_075293420.1|490629_490824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011609870.1|490827_491037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081376608.1|491040_491838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609868.1|491985_492498_-	DUF3158 family protein	NA	NA	NA	NA	NA
WP_075293421.1|492538_492808_-	DUF1845 domain-containing protein	NA	NA	NA	NA	NA
WP_081376609.1|493004_494192_+|integrase	site-specific integrase	integrase	A0A1B5FPC6	Escherichia_phage	32.1	6.8e-46
WP_081376610.1|494163_495003_+	nucleoside triphosphate hydrolase	NA	H7BWC4	unidentified_phage	38.5	1.6e-38
WP_041604971.1|495528_495732_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_135026463.1|495847_496129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293423.1|496097_496319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293424.1|496622_496805_-	ribbon-helix-helix protein, CopG family	NA	Q19US2	Mannheimia_phage	67.8	2.2e-12
WP_012341117.1|497101_497320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341122.1|498274_498574_+	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_075293425.1|498784_499303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081376612.1|500209_501439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609865.1|501601_502153_-	DUF2857 domain-containing protein	NA	NA	NA	NA	NA
WP_075293427.1|502163_503870_-	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_135026467.1|503859_505164_-	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	44.8	3.1e-84
WP_075293428.1|506354_507464_+	methionine biosynthesis PLP-dependent protein	NA	A0A1V0SL56	Klosneuvirus	25.0	3.6e-17
WP_011609498.1|507628_507952_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	49.0	4.3e-19
WP_012341146.1|508069_508765_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
508040:508056	attR	AAAATCATAAAACATTA	NA	NA	NA	NA
WP_075293429.1|508851_510093_-	uracil permease	NA	NA	NA	NA	NA
WP_075293430.1|510194_510821_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_011609493.1|511980_513330_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_075293431.1|513734_514142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293432.1|514951_516742_-	beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	44.2	1.3e-136
WP_012341153.1|516763_517792_-	sugar kinase	NA	NA	NA	NA	NA
WP_075293433.1|518292_519591_+	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	34.9	1.3e-66
WP_075293434.1|519656_521009_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
>prophage 3
NZ_CP018802	Histophilus somni strain USDA-ARS-USMARC-63250 chromosome, complete genome	2110642	1583805	1591076	2110642	transposase	Planktothrix_phage(16.67%)	6	NA	NA
WP_075294159.1|1583805_1585758_+	dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	1.8e-11
WP_012341601.1|1585761_1586568_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	6.3e-19
WP_075294158.1|1586648_1588235_+	FAD-binding protein	NA	M1I0Y3	Acanthocystis_turfacea_Chlorella_virus	23.7	5.7e-08
WP_075319813.1|1588390_1589527_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	53.7	5.2e-112
WP_075319814.1|1589573_1589990_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	64.2	1.5e-48
WP_075294045.1|1590104_1591076_-	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9L0E9	Tupanvirus	19.7	1.2e-05
>prophage 4
NZ_CP018802	Histophilus somni strain USDA-ARS-USMARC-63250 chromosome, complete genome	2110642	1788922	1837434	2110642	holin,head,tail,plate,transposase	Haemophilus_phage(39.47%)	54	NA	NA
WP_075294184.1|1788922_1789723_-|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	31.0	1.7e-08
WP_075294185.1|1789724_1790423_-	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_075294186.1|1790419_1791352_-	DMT family transporter	NA	NA	NA	NA	NA
WP_081376854.1|1791338_1792142_-	phosphotransferase	NA	NA	NA	NA	NA
WP_075294187.1|1792746_1793751_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_011609618.1|1793926_1794394_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	H6WXC9	Vibrio_phage	60.1	8.0e-51
WP_075294188.1|1794409_1796536_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.6	2.6e-258
WP_075294189.1|1796819_1798616_-	ABC transporter ATP-binding protein/permease	NA	G3M9Y6	Bacillus_virus	29.9	1.4e-10
WP_075294190.1|1798818_1800477_+	putative transporter	NA	NA	NA	NA	NA
WP_012341368.1|1800670_1800883_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_081376598.1|1800934_1801108_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_075294192.1|1801796_1802594_-	transcriptional regulator	NA	A0A0M4UKA3	Ralstonia_phage	27.4	8.6e-13
WP_075294193.1|1802716_1802980_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_075294194.1|1804949_1805831_+	AAA family ATPase	NA	A0A0M3LP72	Mannheimia_phage	85.0	3.7e-134
WP_075294195.1|1805838_1806027_+	hypothetical protein	NA	F6MII8	Haemophilus_phage	80.0	1.3e-20
WP_075294196.1|1806023_1806329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075294197.1|1807125_1807341_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_135026520.1|1807325_1807568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075294199.1|1807705_1808164_+	regulatory protein GemA	NA	NA	NA	NA	NA
WP_075294200.1|1808257_1808446_-	ribbon-helix-helix protein, CopG family	NA	Q19US2	Mannheimia_phage	52.7	2.8e-07
WP_075294201.1|1809174_1809843_+	hypothetical protein	NA	A0A0R6PJV6	Moraxella_phage	45.3	2.7e-20
WP_075294202.1|1809853_1810060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075294203.1|1810184_1810610_+	mor transcription activator family protein	NA	F6MIJ8	Haemophilus_phage	66.4	1.5e-48
WP_075294204.1|1810699_1811242_+	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	67.2	2.5e-72
WP_075294205.1|1811248_1811479_+	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	52.7	8.0e-12
WP_075294206.1|1811475_1811733_+	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
WP_075294207.1|1811656_1811866_+	lipoprotein	NA	F6MIK2	Haemophilus_phage	46.4	1.6e-06
WP_075294208.1|1811849_1812104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075294209.1|1812100_1812355_+	hypothetical protein	NA	A0A0M3LP87	Mannheimia_phage	45.0	1.6e-08
WP_075294210.1|1812357_1812867_+	DUF1804 family protein	NA	F6MIK6	Haemophilus_phage	72.2	8.7e-67
WP_075294211.1|1814662_1816282_+	DUF935 domain-containing protein	NA	A0A0M3LRU4	Mannheimia_phage	84.1	4.4e-266
WP_081376597.1|1817781_1818327_+	hypothetical protein	NA	A0A0M3LPA7	Mannheimia_phage	75.4	1.1e-62
WP_075294213.1|1818326_1819307_+|head	head protein	head	B7SDP1	Haemophilus_phage	73.8	1.2e-133
WP_075294214.1|1819385_1819808_+	DUF1320 domain-containing protein	NA	A0A0M3LP98	Mannheimia_phage	64.5	6.5e-44
WP_075294215.1|1819804_1820443_+	DUF1834 family protein	NA	B7SDP5	Haemophilus_phage	70.8	5.0e-80
WP_075294216.1|1820439_1820706_+	hypothetical protein	NA	B7SDP6	Haemophilus_phage	67.1	6.0e-27
WP_075294217.1|1820692_1820866_+	DUF2635 domain-containing protein	NA	A0A0M3LQM9	Mannheimia_phage	72.7	3.7e-14
WP_075294218.1|1820865_1822287_+|tail	phage tail protein	tail	B7SDP8	Haemophilus_phage	74.8	1.5e-196
WP_075294219.1|1822298_1822673_+|tail	phage tail protein	tail	F6MIK8	Haemophilus_phage	85.5	3.3e-55
WP_087437316.1|1822741_1823029_+	hypothetical protein	NA	A0A0M3LSI2	Mannheimia_phage	52.8	3.5e-17
WP_075294221.1|1823299_1825432_+	hypothetical protein	NA	A0A0M3LPB6	Mannheimia_phage	37.0	9.8e-96
WP_075294222.1|1825473_1826829_+	hypothetical protein	NA	F6MIL2	Haemophilus_phage	61.9	1.4e-159
WP_075294228.1|1826839_1827946_+|tail	phage tail protein	tail	F6MIL3	Haemophilus_phage	72.3	1.1e-159
WP_075294223.1|1827942_1828602_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	69.4	1.3e-83
WP_075294224.1|1828704_1829055_+	hypothetical protein	NA	A0A0M3LQK5	Mannheimia_phage	78.4	9.9e-46
WP_075294225.1|1829067_1830129_+|plate	baseplate J/gp47 family protein	plate	F6MIL6	Haemophilus_phage	72.4	1.1e-145
WP_075294226.1|1830128_1830692_+	YmfQ family protein	NA	A0A0M3LQE1	Mannheimia_phage	41.9	4.8e-34
WP_075294227.1|1830694_1831234_+	hypothetical protein	NA	M1TAS6	Escherichia_phage	38.2	2.1e-15
WP_157665525.1|1831211_1832246_+	hypothetical protein	NA	Q94MY0	Haemophilus_virus	49.2	2.5e-60
WP_012341722.1|1832252_1832600_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	50.9	1.3e-18
WP_012340329.1|1832583_1832835_-	cytotoxic translational repressor of toxin-antitoxin stability system	NA	A0A1S5NR91	Burkholderia_phage	50.6	1.2e-13
WP_075294466.1|1832897_1833524_+	DUF4376 domain-containing protein	NA	F6MIL9	Haemophilus_phage	57.2	1.8e-58
WP_011609624.1|1834828_1835518_-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_075294465.1|1835712_1837434_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.5	4.1e-68
