The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	179949	201202	1990826	transposase,protease	Streptococcus_phage(50.0%)	12	NA	NA
WP_087712648.1|179949_180999_+|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	34.6	4.6e-46
WP_012845668.1|182460_183663_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	30.5	1.5e-40
WP_087712647.1|183995_185255_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.3	1.4e-49
WP_087712646.1|185326_186694_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.2	9.2e-47
WP_005725993.1|186608_186839_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_005718145.1|186903_187251_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_087712645.1|187783_192766_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_087712644.1|194288_195611_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_087712643.1|196340_197024_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_087712642.1|197175_197898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712641.1|198040_200335_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_087712640.1|200503_201202_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
>prophage 2
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	420605	476841	1990826	transposase,integrase,tRNA	Bacillus_virus(20.0%)	49	458074:458116	473977:474019
WP_087712541.1|420605_421655_-|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	34.3	1.3e-45
WP_087712540.1|422051_423395_+	MFS transporter	NA	NA	NA	NA	NA
WP_087712539.1|423448_423847_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_087712538.1|423824_425549_-|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	38.7	3.9e-87
WP_087712537.1|425873_427739_+	DNA mismatch repair protein MutS	NA	F2Y1C6	Organic_Lake_phycodnavirus	29.8	1.4e-05
WP_087712536.1|427789_429343_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_087712535.1|429436_430825_-	NADP-dependent phosphogluconate dehydrogenase	NA	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	28.1	5.7e-36
WP_087712534.1|430970_432779_-	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	22.5	3.6e-22
WP_087712533.1|433023_434922_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_012846836.1|434929_436315_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_087712532.1|436425_437301_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_004898271.1|437302_437671_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003648141.1|437719_437860_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_087712531.1|438345_439710_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_087712530.1|439890_441021_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	31.2	1.0e-27
WP_034525310.1|441230_441446_+	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
WP_087284637.1|441449_442574_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_087712529.1|442574_444542_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	46.1	2.0e-143
WP_087712528.1|444552_447042_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	34.6	1.9e-114
WP_004896331.1|447228_447525_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_012845405.1|447558_448077_+	single-stranded DNA-binding protein	NA	A0A290GHL8	Caldibacillus_phage	51.7	4.1e-40
WP_003649728.1|448101_448338_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_012845406.1|448431_449349_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_087712527.1|449456_451475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003651632.1|451486_451942_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_004896324.1|451944_453318_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	52.1	1.0e-125
WP_087712526.1|453415_454300_+	ROK family protein	NA	NA	NA	NA	NA
WP_087712525.1|454364_455507_-	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_087712524.1|455623_457642_-	hypothetical protein	NA	NA	NA	NA	NA
458074:458116	attL	AAAGGTTGATATGACGGGCTTTAAGCCCGTTTTTTTGTGTGCA	NA	NA	NA	NA
WP_007127152.1|458277_459111_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_087712523.1|459434_460292_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_007125837.1|460553_460826_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_007125836.1|460891_461629_+	HesA/MoeB/ThiF family protein	NA	A0A1V0SCZ9	Indivirus	39.7	5.4e-17
WP_087712522.1|461625_462837_+	MFS transporter	NA	NA	NA	NA	NA
WP_087712521.1|463421_463970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157662325.1|464460_464607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712520.1|464687_465548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712519.1|465706_466501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712518.1|466701_467016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712517.1|467017_468127_+	cell division protein FtsK	NA	NA	NA	NA	NA
WP_087712516.1|468123_468474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712515.1|468689_469058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712514.1|469283_469646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712513.1|469662_470706_+	replication initiation protein	NA	A0A2K9LWK0	uncultured_virus	33.9	5.8e-09
WP_087176855.1|470752_470947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087301052.1|471014_472214_+|integrase	site-specific integrase	integrase	Q9ZXG6	Leuconostoc_phage	23.6	7.6e-13
WP_087712512.1|474411_474651_-	hypothetical protein	NA	NA	NA	NA	NA
473977:474019	attR	AAAGGTTGATATGACGGGCTTTAAGCCCGTTTTTTTGTGTGCA	NA	NA	NA	NA
WP_065991183.1|474905_475529_+|transposase	IS607 family transposase	transposase	A0A1V0SJI5	Klosneuvirus	41.1	5.9e-33
WP_087176943.1|475743_476841_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	G3MB42	Bacillus_virus	40.7	3.5e-57
>prophage 3
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	503908	588955	1990826	transposase,protease	Streptococcus_phage(30.43%)	55	NA	NA
WP_005725993.1|503908_504139_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_087712510.1|504053_505421_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.2	9.2e-47
WP_087730857.1|505708_514969_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_087712508.1|515078_515957_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_087730858.1|516343_522469_+	DUF1542 domain-containing protein	NA	NA	NA	NA	NA
WP_061400922.1|524373_525021_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_087713428.1|526244_528170_+	tetracycline resistance ribosomal protection protein Tet(W)	NA	E4ZFJ7	Streptococcus_phage	99.7	0.0e+00
WP_087284261.1|528683_529373_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_004896312.1|529504_530212_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_087713427.1|530244_531084_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	37.0	8.7e-48
WP_004896308.1|531203_531389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087713426.1|531578_533186_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.4	1.3e-31
WP_012845426.1|533208_534018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_087713425.1|534172_536092_+	GTP-binding protein	NA	A0A1S5SF82	Streptococcus_phage	30.2	3.6e-65
WP_043921356.1|537195_537477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713424.1|537839_538271_+	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
WP_004898344.1|538404_540558_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.4	2.7e-61
WP_004898347.1|540610_540775_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_087713423.1|540798_542079_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.2	3.2e-41
WP_087713422.1|542290_543625_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_023599651.1|543923_544973_+|transposase	IS30-like element ISLjo1 family transposase	transposase	H7BWC8	unidentified_phage	35.1	7.1e-47
WP_087713420.1|545133_545706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023599651.1|546329_547379_-|transposase	IS30-like element ISLjo1 family transposase	transposase	H7BWC8	unidentified_phage	35.1	7.1e-47
WP_098046673.1|547529_548534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713418.1|548536_549604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069168787.1|549906_550071_+	CsbD family protein	NA	NA	NA	NA	NA
WP_004898354.1|550110_550377_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_087713417.1|550513_551341_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	65.3	1.4e-103
WP_087713416.1|551403_554253_+	DEAD/DEAH box helicase	NA	A0A0K2CZF8	Paenibacillus_phage	26.8	6.0e-32
WP_087713415.1|554341_555229_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_004896279.1|555265_555499_-	DUF3923 family protein	NA	NA	NA	NA	NA
WP_087713414.1|555629_556679_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_087713413.1|556888_558223_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2I2L5E1	Orpheovirus	28.1	3.8e-05
WP_087713412.1|558267_559422_-	guanosine monophosphate reductase	NA	A0A1V0SHK8	Klosneuvirus	32.6	6.6e-62
WP_087284300.1|559495_560071_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_087713411.1|560147_561161_-	D-2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	35.3	1.7e-50
WP_087713410.1|561417_564072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845438.1|565808_566735_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	42.8	6.9e-62
WP_087713409.1|566866_568717_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	64.7	3.6e-227
WP_087713408.1|568808_570173_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_087713407.1|570234_570957_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	A0A1X9I6N4	Streptococcus_phage	28.2	3.8e-07
WP_004898440.1|570989_571904_+	prolyl aminopeptidase	NA	NA	NA	NA	NA
WP_087713406.1|572057_573008_-	linear amide C-N hydrolase	NA	M1H8K9	Paramecium_bursaria_Chlorella_virus	28.7	4.5e-24
WP_004896231.1|576478_577186_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	3.0e-41
WP_087713468.1|577233_579084_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	32.4	3.5e-33
WP_087713405.1|579073_580402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713404.1|580391_581219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845449.1|581224_582022_+	MBL fold metallo-hydrolase	NA	A0A0B5A2C7	Paenibacillus_phage	33.7	2.8e-27
WP_087284322.1|582105_583326_+	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	29.2	9.2e-22
WP_004896221.1|583836_584316_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_087713403.1|584316_584970_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_087713402.1|584981_586328_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	3.8e-13
WP_087284331.1|586302_586866_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_087713401.1|587103_588030_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_087713400.1|588064_588955_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
>prophage 5
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	1010973	1049289	1990826	transposase,integrase,protease,tRNA	Bacillus_phage(23.08%)	36	1010937:1010996	1024072:1025566
1010937:1010996	attL	TTGAAGTGCCATAGAAAAGTTAGACATTTATAAAATTTTAAAGATTTGATAATACACGAT	NA	NA	NA	NA
WP_117285382.1|1010973_1012376_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	39.6	2.9e-40
WP_087713215.1|1012493_1013648_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
WP_087713214.1|1013640_1014285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713213.1|1014272_1014911_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	30.2	5.9e-12
WP_087713212.1|1014947_1015409_+	GNAT family N-acetyltransferase	NA	E9LUK4	Lactobacillus_phage	99.3	1.9e-81
WP_075140143.1|1015632_1016223_+|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	34.3	1.7e-21
WP_087713211.1|1016361_1016976_+	helix-turn-helix transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	46.8	5.5e-07
WP_087713210.1|1017155_1018073_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.6	2.1e-42
WP_000933358.1|1018065_1018815_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_087713209.1|1018814_1019645_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_087713208.1|1020314_1020707_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_087713207.1|1020875_1021373_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_087713206.1|1021495_1021957_+	HXXEE domain-containing protein	NA	NA	NA	NA	NA
WP_087713205.1|1022419_1023655_+	mobilization protein	NA	NA	NA	NA	NA
WP_117285382.1|1024108_1025511_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	39.6	2.9e-40
WP_087713204.1|1025594_1026302_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
1024072:1025566	attR	TTGAAGTGCCATAGAAAAGTTAGACATTTATAAAATTTTAAAGATTTGATAATACACGATTTCTGTATTTTACAGGAGTCGTGTATTTTAATTTGTTTGATCTTCTAACATTGTTAAACCAATAAATATAATCTTTCAGAATTTCCTTCATCTCTTCTAAACTTCCAATCTTAAGTCGATTCAGTTTTTCTCTCTTCATTAAATTAAATATCGTTTCTCCTGGTGCATTATCATGACAATTTCCTTTTCGGGACATGCTTTGGATTATATTCATTTTCTTTAGTCGAGCCTGATAGCCTGGATTCTGATATTGAAAGCCTTGATCTGAATGAAGGATAGGAGCAGCTCCTGGTGGAAGATTATCTGCTAGTTCATCTAGCATATTATAAATAGTTTTCATTTCAGGAGAATAACTTACTGCACAAGCTAGAATCTCCAAAGAAGCCTCATCTACTACAGGAGAAATATAAACTTTCTTGCCGCTAGTTAGTTTATATTCAGTTACATCGGTATGAAGAACTTTATAGGGGATAGTTTCATCAAAAGTTTGATTTAGGATATTTGGTGCTTTCTTTCCTACATTACCCTTATACGAACTATATTTACCAGTATTTTTATGATAAATTGTTGTTTTTATTCCTAAACTTCTCATTAACTTACGTACTGTTTCTAGAGAAAGTTTAAATCCTTCATCTCTTAACGCTCCCCACATAGGACGATAACCATATGTTTCTTGTCCTTCATAGCCATAATAGATTTCTTGAATCTTCTCTTTTACTAAAGCATACTTATCAGCTTGATTAATTCTATTTTTTACATTGTCATAGTAAGTCTTTCTATTTAATTTGAGCACTTTAAATAAGACCTTAAGTTTAATTTGATGGTGTTTTGCCCGAATATCCTGTATTAATTGTGTTTTTTGTTTGTTGGATAACGTGGATATCGGGCAGCCACTTTTTTTAAGACAAGATTTTCCACTCTAAGTCTTTCTAATTCAGCTTCCTGCTTAAGAATTTTTTCTTCATACTTTTGCTTTTCACTAAGTTCTAACTTTTTAGTTGTCTTCTTACTCTTTTTAGGCACTTTCCTAGGCCGACCTTTCTGTTTAGGCAGCAGCCCAGCATATCCTTCTTCATTGAACTTTTTAGCCCAATTGTATACTTGAGAATCACTAATATTAAACTTAGCCGCTACCTTTGAAACTCCAATAGAATGTGTTAAATAGTAGCGTACCACATTTAGCCTAAAGTCAGAAGAATAAGTAGTTTTAGTATGTTTAACAGATAAGGCAGCTAAACCTTGACACTTAGCCTTATCAATCCATCTACGAATAAGAGTCCAATGAATATTATATTGTTTAGCTAAACCTTTTATTGAATCTTCATGATTTAAATATTTGGAAACAATTTCAATTTTTAATTCAGTCGAATATTTGGTCATAAAAAAATACCTCATAATTATTAGATTTTATGTCTAACAATTATGAGGCACTTCA	NA	NA	NA	NA
WP_087713203.1|1026543_1028958_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	67.2	0.0e+00
WP_087713202.1|1029059_1030718_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_012845760.1|1032731_1033577_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_087713201.1|1033629_1034556_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	28.9	3.9e-17
WP_087713200.1|1034835_1036512_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	31.4	5.6e-70
WP_004895615.1|1036623_1037541_+	class II fructose-bisphosphate aldolase family protein	NA	NA	NA	NA	NA
WP_087713199.1|1037607_1037919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080545348.1|1039074_1039326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845770.1|1039345_1039561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087284945.1|1039990_1040527_+	hypoxanthine phosphoribosyltransferase	NA	A0A2K9L634	Tupanvirus	26.8	8.7e-09
WP_012845772.1|1040539_1041211_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_087713198.1|1041282_1041915_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_087713197.1|1042136_1043471_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQE5	Streptococcus_phage	37.1	2.9e-61
WP_087284950.1|1043570_1044035_+|transposase	IS200/IS605-like element ISLjo5 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	43.1	1.3e-29
WP_012845776.1|1044077_1044536_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_087730860.1|1044600_1045794_-	chloride channel protein	NA	NA	NA	NA	NA
WP_087713196.1|1045920_1046916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713195.1|1046983_1047550_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_087713194.1|1047549_1048488_+	AEC family transporter	NA	NA	NA	NA	NA
WP_087713193.1|1048503_1049289_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 6
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	1053584	1122537	1990826	transposase,bacteriocin	Streptococcus_phage(11.11%)	57	NA	NA
WP_087284957.1|1053584_1054811_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	47.9	2.4e-94
WP_087713190.1|1055587_1057651_+	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_087284958.1|1057660_1058239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053107465.1|1058332_1058659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713463.1|1058886_1059315_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_087713189.1|1059399_1059609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713188.1|1059580_1061281_-|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	38.7	3.9e-87
WP_053107468.1|1062135_1062924_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_087713185.1|1063718_1065050_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.0	4.4e-62
WP_087284965.1|1065468_1066224_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	26.4	3.3e-14
WP_087713183.1|1067126_1068860_+|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	38.7	4.0e-87
WP_087284966.1|1068915_1069536_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_087713182.1|1071672_1072884_-	MFS transporter	NA	NA	NA	NA	NA
WP_087713181.1|1072864_1073095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014567222.1|1073109_1073520_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012845830.1|1073600_1074185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087713180.1|1074483_1075566_+	M42 family peptidase	NA	NA	NA	NA	NA
WP_087713179.1|1075565_1075766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713178.1|1075862_1076516_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	35.1	5.8e-23
WP_087284974.1|1076493_1077255_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_087713177.1|1077324_1078518_-	phosphatidylserine decarboxylase family protein	NA	NA	NA	NA	NA
WP_087713176.1|1078616_1080656_+	beta-galactosidase	NA	NA	NA	NA	NA
WP_087713175.1|1080796_1082275_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.7	1.1e-69
WP_087713174.1|1083742_1084981_+	MFS transporter	NA	NA	NA	NA	NA
WP_087713173.1|1085078_1085933_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_087713172.1|1086017_1086455_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_087713171.1|1086458_1088192_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.8	3.2e-36
WP_087713170.1|1088184_1089954_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.0	6.3e-48
WP_087713169.1|1090007_1090829_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_087713168.1|1091272_1092022_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	2.2e-34
WP_087713167.1|1092023_1092848_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_004896905.1|1092844_1093483_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014567237.1|1093496_1094147_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_087713166.1|1094322_1094712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713165.1|1094958_1095753_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_087713462.1|1095760_1095988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034525152.1|1096014_1096653_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	37.5	5.8e-36
WP_005727505.1|1097408_1098587_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_087713164.1|1102103_1103597_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA	NA
WP_087713461.1|1103589_1104315_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	1.3e-31
WP_080513807.1|1104401_1104932_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_087713163.1|1105049_1105919_+	phosphate ABC transporter substrate-binding protein	NA	M4QRU1	Synechococcus_phage	28.5	2.3e-11
WP_012845862.1|1105935_1106928_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_012845863.1|1106927_1107818_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_087713162.1|1107828_1108629_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	24.0	1.4e-10
WP_087713161.1|1108639_1109395_+	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.7	1.2e-16
WP_087713460.1|1109411_1110095_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_087713160.1|1110703_1112242_+	YfcC family protein	NA	NA	NA	NA	NA
WP_087713159.1|1112325_1112793_+	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_087285354.1|1112881_1113808_+	ribokinase	NA	A0A2H4N7X4	Lake_Baikal_phage	32.9	1.6e-05
WP_087285355.1|1113807_1114506_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_087713158.1|1114622_1115546_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_004895425.1|1115545_1116274_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_087713157.1|1116640_1118374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713156.1|1119018_1120617_+	ABC transporter ATP-binding protein	NA	F2Y352	Organic_Lake_phycodnavirus	32.4	9.2e-14
WP_087713155.1|1120728_1121040_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_012845668.1|1121334_1122537_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	30.5	1.5e-40
>prophage 7
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	1240144	1247374	1990826		Pacmanvirus(16.67%)	8	NA	NA
WP_012845948.1|1240144_1240564_+	NUDIX domain-containing protein	NA	A0A1X6WFB1	Pacmanvirus	34.1	3.4e-08
WP_012845949.1|1240547_1241186_+	uracil-DNA glycosylase	NA	A0A218MKQ4	uncultured_virus	36.1	1.9e-07
WP_011162245.1|1241221_1241845_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	56.3	3.2e-15
WP_087284686.1|1241982_1242231_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003649044.1|1242303_1242525_+	YneF family protein	NA	NA	NA	NA	NA
WP_012845951.1|1242600_1244367_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	29.9	1.1e-52
WP_087713097.1|1244356_1246150_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	24.0	2.8e-11
WP_087713096.1|1246192_1247374_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	34.9	3.0e-46
>prophage 8
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	1483883	1516181	1990826	transposase,protease	Paenibacillus_phage(25.0%)	26	NA	NA
WP_087712972.1|1483883_1484420_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_087712971.1|1486796_1487897_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_087712970.1|1489309_1489855_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_087712969.1|1490008_1490716_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	41.1	4.2e-43
WP_087712968.1|1490682_1491717_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	38.5	9.1e-31
WP_087713452.1|1491837_1492578_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_053107403.1|1494152_1494476_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_014567504.1|1494475_1495879_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_011161980.1|1495871_1496330_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_011161979.1|1496316_1497555_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	4.7e-106
WP_087713451.1|1497535_1498741_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_087712967.1|1498749_1499544_-	Fe-S cluster assembly ATPase SufC	NA	A0A1M7XV31	Cedratvirus	27.1	4.4e-09
WP_041822449.1|1499743_1501120_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_087285061.1|1501522_1502269_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_087712966.1|1502739_1504482_-|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	38.7	4.0e-87
WP_004894642.1|1505878_1506502_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_087712965.1|1506524_1507124_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_087712964.1|1508015_1508336_+	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_087712963.1|1508399_1509116_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_087285054.1|1509133_1510819_-	acetolactate synthase AlsS	NA	H8ZJ31	Ostreococcus_tauri_virus	25.8	2.1e-32
WP_087712962.1|1511001_1511415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713447.1|1511446_1512742_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	49.2	1.6e-45
WP_157662326.1|1513019_1513193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712961.1|1513119_1513323_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_087712960.1|1513797_1514829_-	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
WP_012846242.1|1515023_1516181_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	C1KFS0	Lactobacillus_virus	43.5	3.7e-81
>prophage 9
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	1519549	1529910	1990826	protease,tRNA	Erwinia_phage(16.67%)	9	NA	NA
WP_004894575.1|1519549_1520944_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IB03	Erwinia_phage	26.3	1.6e-30
WP_004894572.1|1520954_1521479_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_087712959.1|1521483_1522407_-	tyrosine recombinase XerC	NA	S5W9T9	Leptospira_phage	28.9	6.3e-23
WP_004894568.1|1522409_1523726_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_087712958.1|1523823_1525905_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	36.3	1.0e-97
WP_004894562.1|1525970_1526816_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	38.2	2.8e-30
WP_087712957.1|1526868_1527621_-	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	37.2	9.3e-25
WP_004894556.1|1527617_1528457_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_087712956.1|1528458_1529910_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	27.7	9.6e-10
>prophage 10
NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1990826	1578277	1632096	1990826	transposase,integrase	Clostridium_phage(14.29%)	42	1568511:1568528	1606006:1606023
1568511:1568528	attL	CATCTAAAACATTATCAT	NA	NA	NA	NA
WP_012846285.1|1578277_1579075_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_087712934.1|1579103_1579745_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_087712933.1|1581314_1582136_-	cell wall protein	NA	NA	NA	NA	NA
WP_004894431.1|1582358_1582739_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_012846291.1|1582828_1583230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712932.1|1583434_1584094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712931.1|1584123_1584564_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_087712930.1|1584715_1585561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712929.1|1585625_1586396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712927.1|1589390_1590269_-	type I-E CRISPR-associated endoribonuclease Cas2	NA	A0A0A8WJ41	Clostridium_phage	28.3	8.3e-09
WP_087712926.1|1590274_1591213_-	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_087712925.1|1591215_1591863_-	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA	NA
WP_087712924.1|1591874_1592585_-	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA	NA
WP_087712923.1|1592565_1593687_-	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA	NA
WP_157662328.1|1593689_1594277_-	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA	NA
WP_157662329.1|1594305_1595991_-	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA	NA
WP_087712920.1|1595983_1598734_-	CRISPR-associated helicase/endonuclease Cas3	NA	A0A2R2ZGW0	Clostridioides_phage	22.3	1.2e-05
WP_087712919.1|1601426_1602344_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_087712918.1|1602557_1602983_-	restriction endonuclease	NA	G3M9Z4	Bacillus_virus	33.0	9.3e-06
WP_087712917.1|1603411_1603597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087712916.1|1603599_1603857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087713447.1|1603859_1605155_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	49.2	1.6e-45
WP_087712915.1|1605416_1605674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712914.1|1606511_1607060_-	type II-A CRISPR-associated protein Csn2	NA	NA	NA	NA	NA
1606006:1606023	attR	CATCTAAAACATTATCAT	NA	NA	NA	NA
WP_087712913.1|1607084_1608134_+|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	34.3	1.0e-45
WP_044025953.1|1608378_1608684_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_087712911.1|1608661_1609570_-	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_087712910.1|1609776_1613904_-	type II CRISPR RNA-guided endonuclease Cas9	NA	NA	NA	NA	NA
WP_087712909.1|1614522_1615929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712908.1|1615918_1616995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712907.1|1617221_1617563_-	hypothetical protein	NA	M1PS09	Streptococcus_phage	33.3	7.4e-06
WP_143467869.1|1618364_1618997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712905.1|1619366_1620866_-	carnitine transporter	NA	NA	NA	NA	NA
WP_087712904.1|1620867_1621581_-	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_087712903.1|1621573_1623310_-	phosphotransferase	NA	NA	NA	NA	NA
WP_087712898.1|1623520_1624699_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_087712902.1|1624733_1625411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143467870.1|1625459_1626299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087712900.1|1626488_1627358_-	DNA adenine methylase	NA	A0A1X6WH62	Pacmanvirus	22.9	2.8e-09
WP_087712899.1|1627399_1629073_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_005727505.1|1629399_1630578_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_087712898.1|1630917_1632096_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
