assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002176835.1_ASM217683v1	NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	1	479613-479722	1	CRISPRCasFinder	no	cas14k	DEDDh,csa3,cas14k,cas2,cas3,cas14j,c2c9_V-U4,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas9	Unclear	ACCAATTTAGCTAGGTTAAAAAATAGTGGGACTGACAC	38	0	0	NA	NA	NA	1	1	TypeV	DEDDh,csa3,cas14k,cas2,cas3,cas14j,c2c9_V-U4,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas9	NA|117aa|up_8|NZ_CP021704.1_468123_468474_+,NA|123aa|up_7|NZ_CP021704.1_468689_469058_+,NA|65aa|up_4|NZ_CP021704.1_470752_470947_+,NA|80aa|up_2|NZ_CP021704.1_474411_474651_-,NA	NA|370aa|up_9|NZ_CP021704.1_467017_468127_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|117aa|up_8|NZ_CP021704.1_468123_468474_+	NA	NA|123aa|up_7|NZ_CP021704.1_468689_469058_+	NA	NA|121aa|up_6|NZ_CP021704.1_469283_469646_+	TIGR01251, Ribose-phosphate_pyrophosphokinase, ribose-phosphate pyrophosphokinase	NA|348aa|up_5|NZ_CP021704.1_469662_470706_+	pfam01719, Rep_2, Plasmid replication protein	NA|65aa|up_4|NZ_CP021704.1_470752_470947_+	NA	NA|400aa|up_3|NZ_CP021704.1_471014_472214_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|80aa|up_2|NZ_CP021704.1_474411_474651_-	NA	NA|208aa|up_1|NZ_CP021704.1_474905_475529_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas14k|366aa|up_0|NZ_CP021704.1_475743_476841_+	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|116aa|down_0|NZ_CP021704.1_503496_503844_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|77aa|down_1|NZ_CP021704.1_503908_504139_+	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain	NA|456aa|down_2|NZ_CP021704.1_504053_505421_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|3087aa|down_3|NZ_CP021704.1_505708_514969_-	pfam04650, YSIRK_signal, YSIRK type signal peptide	NA|293aa|down_4|NZ_CP021704.1_515078_515957_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|2042aa|down_5|NZ_CP021704.1_516343_522469_+	pfam07564, DUF1542, Domain of Unknown Function (DUF1542)	NA|216aa|down_6|NZ_CP021704.1_524373_525021_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|642aa|down_7|NZ_CP021704.1_526244_528170_+	cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins	NA|230aa|down_8|NZ_CP021704.1_528683_529373_-	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|236aa|down_9|NZ_CP021704.1_529504_530212_+	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family
GCF_002176835.1_ASM217683v1	NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	2	1587090-1589319	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2	DEDDh,csa3,cas14k,cas2,cas3,cas14j,c2c9_V-U4,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas9	Type I-E	AGGATCATCTCCACATACGTGGAGAATAC,GGATCATCTCCACATACGTGGAGAATAC,GGATCATCTCCACATACGTGGAGAATAC	29,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	36,36,35	36	TypeI-E	DEDDh,csa3,cas14k,cas2,cas3,cas14j,c2c9_V-U4,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas9	NA|134aa|up_4|NZ_CP021704.1_1582828_1583230_-,NA|220aa|up_3|NZ_CP021704.1_1583434_1584094_+,NA|257aa|up_0|NZ_CP021704.1_1585625_1586396_-,NA	NA|204aa|up_9|NZ_CP021704.1_1577559_1578171_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|266aa|up_8|NZ_CP021704.1_1578277_1579075_+	pfam02899, Phage_int_SAM_1, Phage integrase, N-terminal SAM-like domain	NA|214aa|up_7|NZ_CP021704.1_1579103_1579745_-	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	NA|274aa|up_6|NZ_CP021704.1_1581314_1582136_-	pfam08428, Rib, Rib/alpha-like repeat	NA|127aa|up_5|NZ_CP021704.1_1582358_1582739_-	pfam08861, DUF1828, Domain of unknown function DUF1828	NA|134aa|up_4|NZ_CP021704.1_1582828_1583230_-	NA	NA|220aa|up_3|NZ_CP021704.1_1583434_1584094_+	NA	NA|147aa|up_2|NZ_CP021704.1_1584123_1584564_-	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|282aa|up_1|NZ_CP021704.1_1584715_1585561_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|257aa|up_0|NZ_CP021704.1_1585625_1586396_-	NA	cas2|293aa|down_0|NZ_CP021704.1_1589390_1590269_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|313aa|down_1|NZ_CP021704.1_1590274_1591213_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|216aa|down_2|NZ_CP021704.1_1591215_1591863_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|237aa|down_3|NZ_CP021704.1_1591874_1592585_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|374aa|down_4|NZ_CP021704.1_1592565_1593687_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|down_5|NZ_CP021704.1_1593689_1594277_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|562aa|down_6|NZ_CP021704.1_1594305_1595991_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|917aa|down_7|NZ_CP021704.1_1595983_1598734_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|306aa|down_8|NZ_CP021704.1_1601426_1602344_-	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|142aa|down_9|NZ_CP021704.1_1602557_1602983_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p
GCF_002176835.1_ASM217683v1	NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	3	1599421-1601279	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9	DEDDh,csa3,cas14k,cas2,cas3,cas14j,c2c9_V-U4,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas9	Type I-E,Type II-B,Type II-A,Type II-C	GGATCATCTCCACATACGTGGAGATCAC,GGATCATCTCCACATACGTGGAGATCAC,GGATCATCTCCACATACGTGGAGA	28,28,24	0	0	NA	NA	I-E,II-B:I-E,II-B:I-B,III-A,III-B	30,30,28	30	TypeI-E,TypeII-B,TypeII-A,TypeII-C	DEDDh,csa3,cas14k,cas2,cas3,cas14j,c2c9_V-U4,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas9	NA|257aa|up_8|NZ_CP021704.1_1585625_1586396_-,NA|62aa|down_2|NZ_CP021704.1_1603411_1603597_+,NA|86aa|down_3|NZ_CP021704.1_1603599_1603857_+,NA|86aa|down_5|NZ_CP021704.1_1605416_1605674_-	NA|282aa|up_9|NZ_CP021704.1_1584715_1585561_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|257aa|up_8|NZ_CP021704.1_1585625_1586396_-	NA	cas2|293aa|up_7|NZ_CP021704.1_1589390_1590269_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|313aa|up_6|NZ_CP021704.1_1590274_1591213_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|216aa|up_5|NZ_CP021704.1_1591215_1591863_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|237aa|up_4|NZ_CP021704.1_1591874_1592585_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|374aa|up_3|NZ_CP021704.1_1592565_1593687_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|up_2|NZ_CP021704.1_1593689_1594277_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|562aa|up_1|NZ_CP021704.1_1594305_1595991_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|917aa|up_0|NZ_CP021704.1_1595983_1598734_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|306aa|down_0|NZ_CP021704.1_1601426_1602344_-	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|142aa|down_1|NZ_CP021704.1_1602557_1602983_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|62aa|down_2|NZ_CP021704.1_1603411_1603597_+	NA	NA|86aa|down_3|NZ_CP021704.1_1603599_1603857_+	NA	NA|432aa|down_4|NZ_CP021704.1_1603859_1605155_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|86aa|down_5|NZ_CP021704.1_1605416_1605674_-	NA	csn2|183aa|down_6|NZ_CP021704.1_1606511_1607060_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|350aa|down_7|NZ_CP021704.1_1607084_1608134_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas2|102aa|down_8|NZ_CP021704.1_1608378_1608684_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|down_9|NZ_CP021704.1_1608661_1609570_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1
GCF_002176835.1_ASM217683v1	NZ_CP021704	Lactobacillus johnsonii strain UMNLJ22, complete genome	4	1605925-1606478	3,4,3	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9	DEDDh,csa3,cas14k,cas2,cas3,cas14j,c2c9_V-U4,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas9	Type I-E,Type II-B,Type II-A,Type II-C	GATCTAAACCTTATTGATCTAACAACCATCTAAAAC,GATCTAAACCTTATTGATCTAACAACCATCTAAAAC,GATCTAAACCTTATTGATCTAACAACCATCTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	8,7,6	8	TypeI-E,TypeII-B,TypeII-A,TypeII-C	DEDDh,csa3,cas14k,cas2,cas3,cas14j,c2c9_V-U4,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas9	NA|62aa|up_3|NZ_CP021704.1_1603411_1603597_+,NA|86aa|up_2|NZ_CP021704.1_1603599_1603857_+,NA|86aa|up_0|NZ_CP021704.1_1605416_1605674_-,NA|469aa|down_5|NZ_CP021704.1_1614522_1615929_-,NA|359aa|down_6|NZ_CP021704.1_1615918_1616995_-,NA|211aa|down_8|NZ_CP021704.1_1618364_1618997_-	cas7|374aa|up_9|NZ_CP021704.1_1592565_1593687_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|up_8|NZ_CP021704.1_1593689_1594277_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|562aa|up_7|NZ_CP021704.1_1594305_1595991_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|917aa|up_6|NZ_CP021704.1_1595983_1598734_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|306aa|up_5|NZ_CP021704.1_1601426_1602344_-	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|142aa|up_4|NZ_CP021704.1_1602557_1602983_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|62aa|up_3|NZ_CP021704.1_1603411_1603597_+	NA	NA|86aa|up_2|NZ_CP021704.1_1603599_1603857_+	NA	NA|432aa|up_1|NZ_CP021704.1_1603859_1605155_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|86aa|up_0|NZ_CP021704.1_1605416_1605674_-	NA	csn2|183aa|down_0|NZ_CP021704.1_1606511_1607060_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|350aa|down_1|NZ_CP021704.1_1607084_1608134_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	cas2|102aa|down_2|NZ_CP021704.1_1608378_1608684_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|303aa|down_3|NZ_CP021704.1_1608661_1609570_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1376aa|down_4|NZ_CP021704.1_1609776_1613904_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|469aa|down_5|NZ_CP021704.1_1614522_1615929_-	NA	NA|359aa|down_6|NZ_CP021704.1_1615918_1616995_-	NA	NA|114aa|down_7|NZ_CP021704.1_1617221_1617563_-	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms]	NA|211aa|down_8|NZ_CP021704.1_1618364_1618997_-	NA	NA|500aa|down_9|NZ_CP021704.1_1619366_1620866_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter
