assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002176855.1_ASM217685v1	NZ_CP021703	Lactobacillus johnsonii strain UMNLJ21, complete genome	1	41975-42081	1	CRISPRCasFinder	no	cas14k	cas14k,csa3,DEDDh,cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,c2c9_V-U4,DinG,cas14j	Unclear	AACAGCATTGCCGCTTGGGTCGCTGGAAGCGTAGT	35	0	0	NA	NA	NA	1	1	TypeV	cas14k,csa3,DEDDh,cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,c2c9_V-U4,DinG,cas14j	NA,NA|80aa|down_2|NZ_CP021703.1_47006_47246_+,NA|65aa|down_4|NZ_CP021703.1_50710_50905_-,NA|123aa|down_7|NZ_CP021703.1_52599_52968_-,NA|117aa|down_8|NZ_CP021703.1_53183_53534_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|1585aa|up_5|NZ_CP021703.1_79_4834_-	pfam07564, DUF1542, Domain of Unknown Function (DUF1542)	NA|293aa|up_4|NZ_CP021703.1_5220_6099_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|3247aa|up_3|NZ_CP021703.1_6208_15949_+	pfam04650, YSIRK_signal, YSIRK type signal peptide	NA|456aa|up_2|NZ_CP021703.1_16236_17604_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|77aa|up_1|NZ_CP021703.1_17518_17749_-	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain	NA|116aa|up_0|NZ_CP021703.1_17813_18161_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	cas14k|366aa|down_0|NZ_CP021703.1_44816_45914_-	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|208aa|down_1|NZ_CP021703.1_46128_46752_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|80aa|down_2|NZ_CP021703.1_47006_47246_+	NA	NA|400aa|down_3|NZ_CP021703.1_49443_50643_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|65aa|down_4|NZ_CP021703.1_50710_50905_-	NA	NA|348aa|down_5|NZ_CP021703.1_50951_51995_-	pfam01719, Rep_2, Plasmid replication protein	NA|121aa|down_6|NZ_CP021703.1_52011_52374_-	TIGR01251, Ribose-phosphate_pyrophosphokinase, ribose-phosphate pyrophosphokinase	NA|123aa|down_7|NZ_CP021703.1_52599_52968_-	NA	NA|117aa|down_8|NZ_CP021703.1_53183_53534_-	NA	NA|370aa|down_9|NZ_CP021703.1_53530_54640_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
GCF_002176855.1_ASM217685v1	NZ_CP021703	Lactobacillus johnsonii strain UMNLJ21, complete genome	2	873658-874156	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e	cas14k,csa3,DEDDh,cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,c2c9_V-U4,DinG,cas14j	Type II-C,Type II-B,Type II-A,Type I-E	GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC,GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC,GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC	36,36,36	0	0	NA	NA	NA:NA:NA	7,7,5	7	TypeII-C,TypeII-B,TypeII-A,TypeI-E	cas14k,csa3,DEDDh,cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,c2c9_V-U4,DinG,cas14j	NA|211aa|up_8|NZ_CP021703.1_861138_861771_+,NA|359aa|up_6|NZ_CP021703.1_863140_864217_+,NA|469aa|up_5|NZ_CP021703.1_864206_865613_+,NA|86aa|down_0|NZ_CP021703.1_874461_874719_+,NA|86aa|down_2|NZ_CP021703.1_876278_876536_-,NA|62aa|down_3|NZ_CP021703.1_876538_876724_-	NA|500aa|up_9|NZ_CP021703.1_859269_860769_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|211aa|up_8|NZ_CP021703.1_861138_861771_+	NA	NA|114aa|up_7|NZ_CP021703.1_862572_862914_+	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms]	NA|359aa|up_6|NZ_CP021703.1_863140_864217_+	NA	NA|469aa|up_5|NZ_CP021703.1_864206_865613_+	NA	cas9|1376aa|up_4|NZ_CP021703.1_866231_870359_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|303aa|up_3|NZ_CP021703.1_870565_871474_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_2|NZ_CP021703.1_871451_871757_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|350aa|up_1|NZ_CP021703.1_872001_873051_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	csn2|183aa|up_0|NZ_CP021703.1_873075_873624_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|86aa|down_0|NZ_CP021703.1_874461_874719_+	NA	NA|432aa|down_1|NZ_CP021703.1_874980_876276_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|86aa|down_2|NZ_CP021703.1_876278_876536_-	NA	NA|62aa|down_3|NZ_CP021703.1_876538_876724_-	NA	NA|142aa|down_4|NZ_CP021703.1_877152_877578_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|306aa|down_5|NZ_CP021703.1_877791_878709_+	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	cas3|917aa|down_6|NZ_CP021703.1_881401_884152_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|562aa|down_7|NZ_CP021703.1_884144_885830_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|196aa|down_8|NZ_CP021703.1_885858_886446_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|374aa|down_9|NZ_CP021703.1_886448_887570_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_002176855.1_ASM217685v1	NZ_CP021703	Lactobacillus johnsonii strain UMNLJ21, complete genome	3	878843-880715	2,3,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e	cas14k,csa3,DEDDh,cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,c2c9_V-U4,DinG,cas14j	Type II-C,Type II-B,Type II-A,Type I-E	AAGGATCTTTTTGTGATCTCCACGTATGTGGAGATGATCCT,GTGATCTCCACGTATGTGGAGATGATCC,GTGATCTCCACGTATGTGGAGATGATCC,TCTCCACGTATGTGGAGATGATCC	41,28,28,24	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B:I-B,III-A,III-B	27,30,29,27	30	TypeII-C,TypeII-B,TypeII-A,TypeI-E	cas14k,csa3,DEDDh,cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,c2c9_V-U4,DinG,cas14j	NA|86aa|up_5|NZ_CP021703.1_874461_874719_+,NA|86aa|up_3|NZ_CP021703.1_876278_876536_-,NA|62aa|up_2|NZ_CP021703.1_876538_876724_-,NA|257aa|down_8|NZ_CP021703.1_893739_894510_+	cas1|303aa|up_9|NZ_CP021703.1_870565_871474_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_8|NZ_CP021703.1_871451_871757_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|350aa|up_7|NZ_CP021703.1_872001_873051_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	csn2|183aa|up_6|NZ_CP021703.1_873075_873624_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|86aa|up_5|NZ_CP021703.1_874461_874719_+	NA	NA|432aa|up_4|NZ_CP021703.1_874980_876276_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|86aa|up_3|NZ_CP021703.1_876278_876536_-	NA	NA|62aa|up_2|NZ_CP021703.1_876538_876724_-	NA	NA|142aa|up_1|NZ_CP021703.1_877152_877578_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|306aa|up_0|NZ_CP021703.1_877791_878709_+	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	cas3|917aa|down_0|NZ_CP021703.1_881401_884152_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|562aa|down_1|NZ_CP021703.1_884144_885830_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|196aa|down_2|NZ_CP021703.1_885858_886446_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|374aa|down_3|NZ_CP021703.1_886448_887570_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|237aa|down_4|NZ_CP021703.1_887550_888261_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|down_5|NZ_CP021703.1_888272_888920_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|313aa|down_6|NZ_CP021703.1_888922_889861_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|293aa|down_7|NZ_CP021703.1_889866_890745_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|257aa|down_8|NZ_CP021703.1_893739_894510_+	NA	NA|282aa|down_9|NZ_CP021703.1_894574_895420_-	TIGR04211, hypothetical_protein, SH3 domain protein
GCF_002176855.1_ASM217685v1	NZ_CP021703	Lactobacillus johnsonii strain UMNLJ21, complete genome	4	890817-893046	4,4,3,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	cas14k,csa3,DEDDh,cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,c2c9_V-U4,DinG,cas14j	Type I-E	GTATTCTCCACGTATGTGGAGATGATCCT,GTATTCTCCACGTATGTGGAGATGATCC,GTATTCTCCACGTATGTGGAGATGATCCT,GTATTCTCCACGTATGTGGAGATGATCC	29,28,29,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	34,36,36,34	36	TypeI-E	cas14k,csa3,DEDDh,cas9,cas1,cas2,csn2,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,c2c9_V-U4,DinG,cas14j	NA,NA|257aa|down_0|NZ_CP021703.1_893739_894510_+,NA|220aa|down_3|NZ_CP021703.1_896041_896701_-,NA|134aa|down_4|NZ_CP021703.1_896905_897307_+	NA|142aa|up_9|NZ_CP021703.1_877152_877578_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|306aa|up_8|NZ_CP021703.1_877791_878709_+	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	cas3|917aa|up_7|NZ_CP021703.1_881401_884152_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|562aa|up_6|NZ_CP021703.1_884144_885830_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|196aa|up_5|NZ_CP021703.1_885858_886446_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|374aa|up_4|NZ_CP021703.1_886448_887570_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|237aa|up_3|NZ_CP021703.1_887550_888261_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|NZ_CP021703.1_888272_888920_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|313aa|up_1|NZ_CP021703.1_888922_889861_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|293aa|up_0|NZ_CP021703.1_889866_890745_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|257aa|down_0|NZ_CP021703.1_893739_894510_+	NA	NA|282aa|down_1|NZ_CP021703.1_894574_895420_-	TIGR04211, hypothetical_protein, SH3 domain protein	NA|147aa|down_2|NZ_CP021703.1_895571_896012_+	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|220aa|down_3|NZ_CP021703.1_896041_896701_-	NA	NA|134aa|down_4|NZ_CP021703.1_896905_897307_+	NA	NA|127aa|down_5|NZ_CP021703.1_897396_897777_+	pfam08861, DUF1828, Domain of unknown function DUF1828	NA|274aa|down_6|NZ_CP021703.1_897999_898821_+	pfam08428, Rib, Rib/alpha-like repeat	NA|214aa|down_7|NZ_CP021703.1_900390_901032_+	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	NA|266aa|down_8|NZ_CP021703.1_901060_901858_-	pfam02899, Phage_int_SAM_1, Phage integrase, N-terminal SAM-like domain	NA|204aa|down_9|NZ_CP021703.1_901964_902576_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
