assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002180055.1_ASM218005v1	NZ_CP021532	Escherichia coli strain AR_0149, complete genome	1	926686-926835	1	CRISPRCasFinder	no	RT	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Unclear	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA|213aa|down_6|NZ_CP021532.1_935378_936017_+,NA|195aa|down_8|NZ_CP021532.1_936686_937271_+,NA|120aa|down_9|NZ_CP021532.1_937263_937623_+	NA|132aa|up_9|NZ_CP021532.1_915233_915629_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_CP021532.1_915759_916473_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_CP021532.1_916543_917137_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NZ_CP021532.1_917281_917734_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP021532.1_919656_920661_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP021532.1_920822_921239_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP021532.1_921284_921788_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP021532.1_921980_923168_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP021532.1_923219_926075_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP021532.1_926074_926518_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP021532.1_926871_928383_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP021532.1_928649_929750_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP021532.1_929749_930832_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP021532.1_930992_932495_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP021532.1_932622_933642_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|NZ_CP021532.1_934086_935349_+	PRK09692, PRK09692, integrase; Provisional	NA|213aa|down_6|NZ_CP021532.1_935378_936017_+	NA	NA|77aa|down_7|NZ_CP021532.1_936394_936625_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|195aa|down_8|NZ_CP021532.1_936686_937271_+	NA	NA|120aa|down_9|NZ_CP021532.1_937263_937623_+	NA
GCF_002180055.1_ASM218005v1	NZ_CP021532	Escherichia coli strain AR_0149, complete genome	2	1535094-1535238	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|28aa|up_2|NZ_CP021532.1_1532964_1533048_+,NA	NA|372aa|up_9|NZ_CP021532.1_1527808_1528924_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP021532.1_1528940_1529750_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|121aa|up_7|NZ_CP021532.1_1529877_1530240_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP021532.1_1530422_1530947_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP021532.1_1530996_1531188_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP021532.1_1531445_1532123_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP021532.1_1532194_1532479_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP021532.1_1532964_1533048_+	NA	NA|304aa|up_1|NZ_CP021532.1_1533125_1534037_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP021532.1_1534161_1535070_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP021532.1_1535314_1536499_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP021532.1_1536624_1539771_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP021532.1_1539767_1540970_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP021532.1_1541159_1541849_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP021532.1_1541906_1543202_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP021532.1_1543608_1544928_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP021532.1_1545003_1546377_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP021532.1_1546532_1548350_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP021532.1_1548354_1548936_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP021532.1_1549028_1550099_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_002180055.1_ASM218005v1	NZ_CP021532	Escherichia coli strain AR_0149, complete genome	3	1675280-1675376	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP021532.1_1663060_1664422_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP021532.1_1664478_1665780_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP021532.1_1665801_1666947_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP021532.1_1667174_1667960_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP021532.1_1667970_1669206_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP021532.1_1669227_1670277_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP021532.1_1670593_1672261_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP021532.1_1672270_1673530_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP021532.1_1673540_1674356_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP021532.1_1674352_1675246_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP021532.1_1675440_1676508_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP021532.1_1676504_1677014_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP021532.1_1677131_1677854_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP021532.1_1677856_1678351_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP021532.1_1678524_1679910_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP021532.1_1679945_1680467_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP021532.1_1680574_1680787_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP021532.1_1680788_1681655_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP021532.1_1682125_1682668_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP021532.1_1682887_1683580_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_002180055.1_ASM218005v1	NZ_CP021532	Escherichia coli strain AR_0149, complete genome	4	3491420-3491546	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|395aa|up_9|NZ_CP021532.1_3470327_3471512_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP021532.1_3471585_3472362_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP021532.1_3472366_3474016_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP021532.1_3474016_3478411_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP021532.1_3478554_3479178_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP021532.1_3479174_3480863_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP021532.1_3481011_3483639_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP021532.1_3483785_3484508_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP021532.1_3484635_3488388_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP021532.1_3489083_3491369_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP021532.1_3491602_3492733_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP021532.1_3492732_3492987_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP021532.1_3493040_3493691_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP021532.1_3494153_3495230_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP021532.1_3495234_3496593_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP021532.1_3496865_3498494_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP021532.1_3498483_3499743_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP021532.1_3499739_3500930_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP021532.1_3501122_3502022_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP021532.1_3502034_3502220_+	PRK09956, PRK09956, ISNCY family transposase
GCF_002180055.1_ASM218005v1	NZ_CP021532	Escherichia coli strain AR_0149, complete genome	5	3988638-3989339	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,8	11	TypeI-E	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP021532.1_3980449_3981211_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP021532.1_3981191_3982241_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP021532.1_3982237_3982717_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP021532.1_3982716_3983427_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP021532.1_3983445_3983757_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP021532.1_3983950_3984274_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP021532.1_3984323_3984929_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP021532.1_3984928_3986356_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP021532.1_3986357_3987266_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP021532.1_3987517_3988555_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP021532.1_3989444_3989729_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP021532.1_3989730_3990648_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP021532.1_3990663_3991263_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP021532.1_3991249_3991924_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP021532.1_3991926_3993018_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP021532.1_3993030_3993513_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|495aa|down_6|NZ_CP021532.1_3993505_3994990_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP021532.1_3995428_3998095_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP021532.1_3998453_3999188_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP021532.1_3999262_4000975_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_002180055.1_ASM218005v1	NZ_CP021532	Escherichia coli strain AR_0149, complete genome	6	4014888-4015222	6,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas3	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Unclear	TCGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	30,26,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	csa3,cas3,DEDDh,c2c9_V-U4,RT,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA|47aa|down_1|NZ_CP021532.1_4016371_4016512_+	NA|424aa|up_9|NZ_CP021532.1_4003532_4004804_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP021532.1_4004794_4005055_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP021532.1_4005071_4005647_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP021532.1_4005794_4006655_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP021532.1_4006651_4007431_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP021532.1_4007408_4008746_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP021532.1_4008839_4010294_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP021532.1_4010363_4011149_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP021532.1_4011467_4012745_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP021532.1_4012771_4014250_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP021532.1_4015561_4016233_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP021532.1_4016371_4016512_+	NA	NA|291aa|down_2|NZ_CP021532.1_4016525_4017398_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP021532.1_4017457_4018756_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP021532.1_4018843_4020481_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP021532.1_4020708_4021500_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP021532.1_4021570_4021906_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP021532.1_4021905_4022154_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP021532.1_4022231_4024466_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP021532.1_4024513_4025815_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
