assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002192295.1_ASM219229v1	NZ_CP021736	Escherichia coli strain AR_0150, complete genome	1	222350-222476	1	CRISPRCasFinder	no		cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|395aa|up_9|NZ_CP021736.1_201257_202442_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP021736.1_202515_203292_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP021736.1_203296_204946_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP021736.1_204946_209341_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP021736.1_209484_210108_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP021736.1_210104_211793_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP021736.1_211941_214569_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP021736.1_214715_215438_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP021736.1_215565_219318_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP021736.1_220013_222299_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP021736.1_222532_223663_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP021736.1_223662_223917_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP021736.1_223970_224621_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP021736.1_225083_226160_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP021736.1_226164_227523_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP021736.1_227795_229424_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP021736.1_229413_230673_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP021736.1_230669_231860_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP021736.1_232052_232952_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP021736.1_232964_233150_+	PRK09956, PRK09956, ISNCY family transposase
GCF_002192295.1_ASM219229v1	NZ_CP021736	Escherichia coli strain AR_0150, complete genome	2	732176-732877	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,8	11	TypeI-E	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|254aa|up_9|NZ_CP021736.1_723987_724749_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP021736.1_724729_725779_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP021736.1_725775_726255_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP021736.1_726254_726965_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP021736.1_726983_727295_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP021736.1_727488_727812_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP021736.1_727861_728467_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP021736.1_728466_729894_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP021736.1_729895_730804_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP021736.1_731055_732093_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP021736.1_732982_733267_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP021736.1_733268_734186_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP021736.1_734201_734801_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP021736.1_734787_735462_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP021736.1_735464_736556_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP021736.1_736568_737051_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|495aa|down_6|NZ_CP021736.1_737043_738528_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP021736.1_738966_741633_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP021736.1_741991_742726_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP021736.1_742800_744513_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_002192295.1_ASM219229v1	NZ_CP021736	Escherichia coli strain AR_0150, complete genome	3	758426-758760	3,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas3	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	Unclear	TCGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	30,26,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	NA,NA|47aa|down_1|NZ_CP021736.1_759909_760050_+	NA|424aa|up_9|NZ_CP021736.1_747070_748342_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP021736.1_748332_748593_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP021736.1_748609_749185_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP021736.1_749332_750193_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP021736.1_750189_750969_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP021736.1_750946_752284_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP021736.1_752377_753832_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP021736.1_753901_754687_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP021736.1_755005_756283_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP021736.1_756309_757788_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP021736.1_759099_759771_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP021736.1_759909_760050_+	NA	NA|291aa|down_2|NZ_CP021736.1_760063_760936_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP021736.1_760995_762294_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP021736.1_762381_764019_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP021736.1_764246_765038_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP021736.1_765108_765444_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP021736.1_765443_765692_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP021736.1_765769_768004_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP021736.1_768051_769353_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_002192295.1_ASM219229v1	NZ_CP021736	Escherichia coli strain AR_0150, complete genome	4	2494219-2494368	4	CRISPRCasFinder	no	RT	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	Unclear	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	NA,NA|213aa|down_6|NZ_CP021736.1_2502911_2503550_+,NA|195aa|down_8|NZ_CP021736.1_2504219_2504804_+,NA|120aa|down_9|NZ_CP021736.1_2504796_2505156_+	NA|132aa|up_9|NZ_CP021736.1_2482766_2483162_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_CP021736.1_2483292_2484006_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_CP021736.1_2484076_2484670_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NZ_CP021736.1_2484814_2485267_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP021736.1_2487189_2488194_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP021736.1_2488355_2488772_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP021736.1_2488817_2489321_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP021736.1_2489513_2490701_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP021736.1_2490752_2493608_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP021736.1_2493607_2494051_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP021736.1_2494404_2495916_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP021736.1_2496182_2497283_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP021736.1_2497282_2498365_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP021736.1_2498525_2500028_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP021736.1_2500155_2501175_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|NZ_CP021736.1_2501619_2502882_+	PRK09692, PRK09692, integrase; Provisional	NA|213aa|down_6|NZ_CP021736.1_2502911_2503550_+	NA	NA|77aa|down_7|NZ_CP021736.1_2503927_2504158_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|195aa|down_8|NZ_CP021736.1_2504219_2504804_+	NA	NA|120aa|down_9|NZ_CP021736.1_2504796_2505156_+	NA
GCF_002192295.1_ASM219229v1	NZ_CP021736	Escherichia coli strain AR_0150, complete genome	5	3132712-3132856	5	CRISPRCasFinder	no		cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	NA|28aa|up_2|NZ_CP021736.1_3130582_3130666_+,NA	NA|372aa|up_9|NZ_CP021736.1_3125426_3126542_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP021736.1_3126558_3127368_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|121aa|up_7|NZ_CP021736.1_3127495_3127858_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP021736.1_3128040_3128565_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP021736.1_3128614_3128806_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP021736.1_3129063_3129741_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP021736.1_3129812_3130097_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP021736.1_3130582_3130666_+	NA	NA|304aa|up_1|NZ_CP021736.1_3130743_3131655_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP021736.1_3131779_3132688_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP021736.1_3132932_3134117_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP021736.1_3134242_3137389_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP021736.1_3137385_3138588_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP021736.1_3138777_3139467_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP021736.1_3139524_3140820_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP021736.1_3141226_3142546_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP021736.1_3142621_3143995_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP021736.1_3144150_3145968_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP021736.1_3145972_3146554_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP021736.1_3146646_3147717_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_002192295.1_ASM219229v1	NZ_CP021736	Escherichia coli strain AR_0150, complete genome	6	3272898-3272994	6	CRISPRCasFinder	no		cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|454aa|up_9|NZ_CP021736.1_3260678_3262040_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP021736.1_3262096_3263398_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP021736.1_3263419_3264565_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP021736.1_3264792_3265578_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP021736.1_3265588_3266824_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP021736.1_3266845_3267895_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP021736.1_3268211_3269879_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP021736.1_3269888_3271148_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP021736.1_3271158_3271974_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP021736.1_3271970_3272864_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP021736.1_3273058_3274126_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP021736.1_3274122_3274632_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP021736.1_3274749_3275472_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP021736.1_3275474_3275969_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP021736.1_3276142_3277528_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP021736.1_3277563_3278085_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP021736.1_3278192_3278405_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP021736.1_3278406_3279273_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP021736.1_3279743_3280286_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP021736.1_3280505_3281198_+	PRK15195, PRK15195, molecular chaperone FimC
