assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002197045.1_ASM219704v1	NZ_CP021808	Sinorhizobium meliloti strain Rm41 chromosome, complete genome	1	2594907-2595053	1	CRISPRCasFinder	no		csa3,cas3,RT,DEDDh,WYL	Orphan	TCTCCCCGCATGCGGGGAGAAGGG	24	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,RT,DEDDh,WYL	NA,NA	NA|243aa|up_9|NZ_CP021808.1_2583942_2584671_+	COG5461, COG5461, Type IV pili component [Cell motility and secretion]	NA|429aa|up_8|NZ_CP021808.1_2584693_2585980_+	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|467aa|up_7|NZ_CP021808.1_2586110_2587511_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|337aa|up_6|NZ_CP021808.1_2587569_2588580_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|328aa|up_5|NZ_CP021808.1_2588587_2589571_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|388aa|up_4|NZ_CP021808.1_2589799_2590963_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|270aa|up_3|NZ_CP021808.1_2591220_2592030_-	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	NA|464aa|up_2|NZ_CP021808.1_2592160_2593552_+	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]	NA|115aa|up_1|NZ_CP021808.1_2593639_2593984_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|285aa|up_0|NZ_CP021808.1_2593992_2594847_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|320aa|down_0|NZ_CP021808.1_2595083_2596043_-	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|543aa|down_1|NZ_CP021808.1_2596053_2597682_-	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|378aa|down_2|NZ_CP021808.1_2597690_2598824_-	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|361aa|down_3|NZ_CP021808.1_2598823_2599906_-	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|620aa|down_4|NZ_CP021808.1_2600086_2601946_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|356aa|down_5|NZ_CP021808.1_2602237_2603305_+	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane]	NA|127aa|down_6|NZ_CP021808.1_2603425_2603806_+	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism]	NA|340aa|down_7|NZ_CP021808.1_2603867_2604887_+	PRK00292, glk, glucokinase; Provisional	NA|602aa|down_8|NZ_CP021808.1_2604995_2606801_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|273aa|down_9|NZ_CP021808.1_2606818_2607637_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002197045.1_ASM219704v1	NZ_CP021808	Sinorhizobium meliloti strain Rm41 chromosome, complete genome	2	3545325-3545438	2	CRISPRCasFinder	no		csa3,cas3,RT,DEDDh,WYL	Orphan	CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DEDDh,WYL	NA|52aa|up_4|NZ_CP021808.1_3540654_3540810_-,NA|59aa|up_3|NZ_CP021808.1_3540847_3541024_-,NA	NA|987aa|up_9|NZ_CP021808.1_3529420_3532381_+	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA|773aa|up_8|NZ_CP021808.1_3532391_3534710_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|885aa|up_7|NZ_CP021808.1_3535072_3537727_-	PRK14015, pepN, aminopeptidase N; Provisional	NA|313aa|up_6|NZ_CP021808.1_3538152_3539091_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|430aa|up_5|NZ_CP021808.1_3539100_3540390_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|52aa|up_4|NZ_CP021808.1_3540654_3540810_-	NA	NA|59aa|up_3|NZ_CP021808.1_3540847_3541024_-	NA	NA|287aa|up_2|NZ_CP021808.1_3541162_3542023_-	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|430aa|up_1|NZ_CP021808.1_3542095_3543385_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|555aa|up_0|NZ_CP021808.1_3543654_3545319_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|333aa|down_0|NZ_CP021808.1_3545883_3546882_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold	NA|296aa|down_1|NZ_CP021808.1_3547102_3547990_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP021808.1_3548079_3549093_-	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein	NA|134aa|down_3|NZ_CP021808.1_3549193_3549595_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|309aa|down_4|NZ_CP021808.1_3549733_3550660_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|496aa|down_5|NZ_CP021808.1_3550675_3552163_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|340aa|down_6|NZ_CP021808.1_3552155_3553175_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|319aa|down_7|NZ_CP021808.1_3553270_3554227_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|501aa|down_8|NZ_CP021808.1_3554255_3555758_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|107aa|down_9|NZ_CP021808.1_3555837_3556158_-	COG1742, COG1742, Uncharacterized conserved protein [Function unknown]
GCF_002197045.1_ASM219704v1	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	1	7316-7425	1	CRISPRCasFinder	no		DEDDh	Orphan	GCCGCGCGGCGGGACCGCCGCGATGA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DEDDh,WYL	NA|64aa|up_1|NZ_CP021809.1_3287_3479_+,NA|116aa|down_0|NZ_CP021809.1_7807_8155_+,NA|239aa|down_3|NZ_CP021809.1_10061_10778_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|135aa|up_2|NZ_CP021809.1_1912_2317_-	pfam07886, BA14K, BA14K-like protein	NA|64aa|up_1|NZ_CP021809.1_3287_3479_+	NA	NA|587aa|up_0|NZ_CP021809.1_4681_6442_+	COG5616, COG5616, Predicted integral membrane protein [Function unknown]	NA|116aa|down_0|NZ_CP021809.1_7807_8155_+	NA	NA|50aa|down_1|NZ_CP021809.1_8195_8345_-	pfam11972, HTH_13, HTH DNA binding domain	NA|330aa|down_2|NZ_CP021809.1_8823_9813_-	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|239aa|down_3|NZ_CP021809.1_10061_10778_+	NA	NA|397aa|down_4|NZ_CP021809.1_10827_12018_+	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]	NA|114aa|down_5|NZ_CP021809.1_12295_12637_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|306aa|down_6|NZ_CP021809.1_12666_13584_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|275aa|down_7|NZ_CP021809.1_13704_14529_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|683aa|down_8|NZ_CP021809.1_15034_17083_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|212aa|down_9|NZ_CP021809.1_17087_17723_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]
GCF_002197045.1_ASM219704v1	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1	1422894-1423011	1	CRISPRCasFinder	no		RT,csa3	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DEDDh,WYL	NA|181aa|up_4|NZ_CP021810.1_1415705_1416248_-,NA|309aa|up_2|NZ_CP021810.1_1417122_1418049_-,NA|131aa|down_0|NZ_CP021810.1_1427134_1427527_-,NA|133aa|down_3|NZ_CP021810.1_1429626_1430025_-	NA|297aa|up_9|NZ_CP021810.1_1408434_1409325_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NZ_CP021810.1_1409524_1410148_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NZ_CP021810.1_1410144_1411122_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NZ_CP021810.1_1411118_1413344_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NZ_CP021810.1_1413424_1415206_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NZ_CP021810.1_1415705_1416248_-	NA	NA|170aa|up_3|NZ_CP021810.1_1416450_1416960_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|309aa|up_2|NZ_CP021810.1_1417122_1418049_-	NA	NA|414aa|up_1|NZ_CP021810.1_1418073_1419315_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021810.1_1419394_1420312_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NZ_CP021810.1_1427134_1427527_-	NA	NA|384aa|down_1|NZ_CP021810.1_1427617_1428769_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NZ_CP021810.1_1428756_1429539_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NZ_CP021810.1_1429626_1430025_-	NA	NA|1113aa|down_4|NZ_CP021810.1_1430150_1433489_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NZ_CP021810.1_1433673_1435716_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NZ_CP021810.1_1435721_1436885_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NZ_CP021810.1_1436974_1437997_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NZ_CP021810.1_1438703_1440161_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021810.1_1440157_1441432_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
GCF_002197045.1_ASM219704v1	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	2	1423101-1423200	2	CRISPRCasFinder	no		RT,csa3	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DEDDh,WYL	NA|181aa|up_4|NZ_CP021810.1_1415705_1416248_-,NA|309aa|up_2|NZ_CP021810.1_1417122_1418049_-,NA|131aa|down_0|NZ_CP021810.1_1427134_1427527_-,NA|133aa|down_3|NZ_CP021810.1_1429626_1430025_-	NA|297aa|up_9|NZ_CP021810.1_1408434_1409325_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NZ_CP021810.1_1409524_1410148_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NZ_CP021810.1_1410144_1411122_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NZ_CP021810.1_1411118_1413344_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NZ_CP021810.1_1413424_1415206_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NZ_CP021810.1_1415705_1416248_-	NA	NA|170aa|up_3|NZ_CP021810.1_1416450_1416960_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|309aa|up_2|NZ_CP021810.1_1417122_1418049_-	NA	NA|414aa|up_1|NZ_CP021810.1_1418073_1419315_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021810.1_1419394_1420312_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NZ_CP021810.1_1427134_1427527_-	NA	NA|384aa|down_1|NZ_CP021810.1_1427617_1428769_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NZ_CP021810.1_1428756_1429539_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NZ_CP021810.1_1429626_1430025_-	NA	NA|1113aa|down_4|NZ_CP021810.1_1430150_1433489_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NZ_CP021810.1_1433673_1435716_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NZ_CP021810.1_1435721_1436885_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NZ_CP021810.1_1436974_1437997_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NZ_CP021810.1_1438703_1440161_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021810.1_1440157_1441432_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
GCF_002197045.1_ASM219704v1	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	3	1423275-1423394	3	CRISPRCasFinder	no		RT,csa3	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DEDDh,WYL	NA|181aa|up_4|NZ_CP021810.1_1415705_1416248_-,NA|309aa|up_2|NZ_CP021810.1_1417122_1418049_-,NA|131aa|down_0|NZ_CP021810.1_1427134_1427527_-,NA|133aa|down_3|NZ_CP021810.1_1429626_1430025_-	NA|297aa|up_9|NZ_CP021810.1_1408434_1409325_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NZ_CP021810.1_1409524_1410148_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NZ_CP021810.1_1410144_1411122_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NZ_CP021810.1_1411118_1413344_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NZ_CP021810.1_1413424_1415206_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NZ_CP021810.1_1415705_1416248_-	NA	NA|170aa|up_3|NZ_CP021810.1_1416450_1416960_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|309aa|up_2|NZ_CP021810.1_1417122_1418049_-	NA	NA|414aa|up_1|NZ_CP021810.1_1418073_1419315_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021810.1_1419394_1420312_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NZ_CP021810.1_1427134_1427527_-	NA	NA|384aa|down_1|NZ_CP021810.1_1427617_1428769_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NZ_CP021810.1_1428756_1429539_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NZ_CP021810.1_1429626_1430025_-	NA	NA|1113aa|down_4|NZ_CP021810.1_1430150_1433489_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NZ_CP021810.1_1433673_1435716_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NZ_CP021810.1_1435721_1436885_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NZ_CP021810.1_1436974_1437997_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NZ_CP021810.1_1438703_1440161_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021810.1_1440157_1441432_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
