The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021822	Sinorhizobium meliloti strain KH46 chromosome, complete genome	3699865	1982008	1991846	3699865	protease	Agrobacterium_phage(16.67%)	6	NA	NA
WP_003531805.1|1982008_1982635_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	61.4	8.4e-64
WP_003531807.1|1982928_1984206_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.7	4.2e-134
WP_003531808.1|1984679_1987100_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	50.6	6.8e-210
WP_003531811.1|1987321_1987594_+	DNA-binding protein HupB	NA	A0A172Q061	Acinetobacter_phage	34.1	1.0e-05
WP_088199243.1|1988098_1989460_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.2	1.5e-28
WP_014526680.1|1989656_1991846_+	esterase-like activity of phytase family protein	NA	E3SJA5	Synechococcus_phage	42.4	4.1e-81
>prophage 2
NZ_CP021822	Sinorhizobium meliloti strain KH46 chromosome, complete genome	3699865	2269063	2280312	3699865	tRNA	uncultured_Mediterranean_phage(80.0%)	12	NA	NA
WP_010969277.1|2269063_2270098_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.0e-22
WP_086017693.1|2270191_2271010_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.7	1.7e-32
WP_010969279.1|2271002_2271722_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.2	9.8e-40
WP_010969280.1|2271786_2272896_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.6	1.4e-29
WP_003534564.1|2272990_2273197_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	65.9	8.2e-08
WP_088199357.1|2273270_2273918_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003534569.1|2273914_2274757_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.2	1.7e-43
WP_003534571.1|2274893_2276177_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.0	8.0e-101
WP_010969283.1|2276204_2276975_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.9	1.5e-22
WP_088199358.1|2276971_2277625_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	33.7	4.4e-15
WP_010969285.1|2277796_2278450_+	biotin transport regulator	NA	NA	NA	NA	NA
WP_010969286.1|2278773_2280312_+	LysM peptidoglycan-binding domain-containing protein	NA	I3PV24	Clostridium_phage	32.8	1.0e-14
>prophage 3
NZ_CP021822	Sinorhizobium meliloti strain KH46 chromosome, complete genome	3699865	2912874	2941128	3699865	terminase,head,tail	Sinorhizobium_phage(54.17%)	35	NA	NA
WP_088199476.1|2912874_2913240_-	hypothetical protein	NA	A0A076GD39	Sinorhizobium_phage	71.7	3.4e-41
WP_088199477.1|2913294_2913537_-	hypothetical protein	NA	J7F8X5	Agrobacterium_phage	60.3	4.3e-16
WP_088199478.1|2913657_2914626_-	chitinase	NA	A0A076G6J8	Sinorhizobium_phage	88.9	1.3e-167
WP_088199605.1|2914817_2915009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088199479.1|2915118_2915379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041169377.1|2915800_2916061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015007726.1|2916228_2916558_-	hypothetical protein	NA	A0A291AUN7	Sinorhizobium_phage	71.9	3.7e-26
WP_015007727.1|2916544_2916895_-	hypothetical protein	NA	A0A2H4J9Z7	uncultured_Caudovirales_phage	51.4	2.0e-22
WP_088199481.1|2916894_2917995_-|tail	phage tail protein	tail	A0A291AUN5	Sinorhizobium_phage	55.2	4.4e-31
WP_088199482.1|2918006_2919515_-	hypothetical protein	NA	A0A2D2W219	Sinorhizobium_phage	92.0	1.9e-279
WP_088199483.1|2919514_2922262_-|tail	phage tail protein	tail	A0A291AUN1	Sinorhizobium_phage	62.1	2.2e-257
WP_088199484.1|2922268_2922673_-	hypothetical protein	NA	A0A291AUN0	Sinorhizobium_phage	73.9	1.1e-48
WP_088199485.1|2922771_2923362_-	DUF2163 domain-containing protein	NA	A0A291AUM8	Sinorhizobium_phage	69.5	1.4e-73
WP_088199486.1|2923358_2924012_-	hypothetical protein	NA	A0A291AUM9	Sinorhizobium_phage	53.7	3.5e-52
WP_014529559.1|2924075_2924471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088199487.1|2924467_2926558_-|tail	phage tail length tape measure family protein	tail	A0A076G7H2	Sinorhizobium_phage	63.2	2.3e-17
WP_088199488.1|2926618_2927014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088199489.1|2927113_2927788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088199490.1|2927784_2928018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088199491.1|2928113_2928515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088199492.1|2928529_2929015_-	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	31.2	1.9e-10
WP_015007742.1|2929016_2929442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088199493.1|2929648_2930092_-	hypothetical protein	NA	W6E8K5	Rhizobium_phage	45.5	2.5e-17
WP_088199494.1|2930091_2931129_-|head	head morphogenesis protein	head	A0A076G6I6	Sinorhizobium_phage	49.7	6.5e-77
WP_088199495.1|2931207_2931717_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	37.5	3.6e-20
WP_088199496.1|2932014_2932380_-	hypothetical protein	NA	A0A076G8G5	Sinorhizobium_phage	76.7	1.6e-46
WP_015007748.1|2932460_2932622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088199497.1|2933187_2933529_-	hypothetical protein	NA	A0A2H4J908	uncultured_Caudovirales_phage	47.5	3.0e-07
WP_088199498.1|2933543_2934521_-	DUF2184 domain-containing protein	NA	A0A2H4J526	uncultured_Caudovirales_phage	74.9	6.2e-138
WP_088199499.1|2934546_2935017_-	hypothetical protein	NA	A0A2H4J1G1	uncultured_Caudovirales_phage	61.5	7.8e-38
WP_088199500.1|2935029_2936175_-	DUF2213 domain-containing protein	NA	A0A2R3UA67	Siphoviridae_environmental_samples	47.4	5.9e-79
WP_088199501.1|2936235_2936991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088199502.1|2937022_2938381_-	DUF1073 domain-containing protein	NA	L7TRA1	Rhizobium_phage	51.8	7.3e-129
WP_088199504.1|2939292_2940624_-	DNA-packaging protein	NA	Q1WDG8	Streptomyces_phage	32.8	9.9e-38
WP_088199505.1|2940627_2941128_-|terminase	terminase small subunit	terminase	A0A076GD11	Sinorhizobium_phage	43.4	1.2e-28
>prophage 4
NZ_CP021822	Sinorhizobium meliloti strain KH46 chromosome, complete genome	3699865	3304112	3353668	3699865	tRNA,holin,protease,transposase	Klosneuvirus(14.29%)	45	NA	NA
WP_010969874.1|3304112_3304832_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_003534512.1|3304887_3305193_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
WP_010969876.1|3305423_3306527_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_003534506.1|3306999_3307455_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010969877.1|3307451_3307922_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003534501.1|3307967_3308510_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.5	2.5e-35
WP_010969878.1|3308684_3308870_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_088199554.1|3308888_3310148_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A1B0V011	Roseobacter_phage	42.1	4.3e-51
WP_010969880.1|3310144_3310777_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003534495.1|3310773_3311397_-	DUF1285 domain-containing protein	NA	NA	NA	NA	NA
WP_010969882.1|3311755_3312769_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_010969883.1|3312772_3313693_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_088199555.1|3313689_3316503_+	DUF4159 domain-containing protein	NA	NA	NA	NA	NA
WP_010969885.1|3316513_3318583_+	membrane protein	NA	NA	NA	NA	NA
WP_010969886.1|3318597_3319149_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010969887.1|3319406_3320399_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010969888.1|3320564_3320771_+	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_127750025.1|3320916_3321741_+	Fic family protein	NA	NA	NA	NA	NA
WP_088199556.1|3321865_3322357_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_003534453.1|3322439_3323342_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_010969891.1|3323535_3324051_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003534449.1|3324054_3324882_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_003534446.1|3325004_3325433_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_010969893.1|3325429_3325681_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA	NA
WP_010969894.1|3325818_3327528_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003534440.1|3327628_3327766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003534438.1|3327999_3328587_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	37.3	1.1e-28
WP_010969897.1|3330626_3331538_-	aminoglycoside phosphotransferase APH(3')	NA	Q75ZG1	Hepacivirus	30.2	8.6e-17
WP_010969898.1|3331569_3332034_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	47.1	1.1e-28
WP_010969899.1|3332030_3332951_-	cation transporter	NA	NA	NA	NA	NA
WP_010969900.1|3333119_3335309_-	anthranilate synthase	NA	NA	NA	NA	NA
WP_010969901.1|3335582_3337814_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_014529145.1|3337937_3338924_+	extensin family protein	NA	NA	NA	NA	NA
WP_010969903.1|3339084_3340764_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_010969904.1|3340854_3342078_-	DUF2333 family protein	NA	NA	NA	NA	NA
WP_088199557.1|3342081_3343371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003537933.1|3343554_3344718_+|transposase	IS4-like element ISRm16 family transposase	transposase	NA	NA	NA	NA
WP_010969906.1|3344895_3345300_-	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_010969907.1|3345410_3347327_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_088199558.1|3347330_3348479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003535848.1|3348540_3349629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010969910.1|3349789_3350377_-	thymidine kinase	NA	A0A0K2FHC3	Enterobacter_phage	54.7	4.1e-52
WP_010969911.1|3350663_3351620_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_013844756.1|3351776_3352622_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_010969913.1|3352618_3353668_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	33.7	1.9e-20
>prophage 1
NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1597380	988607	1046209	1597380	transposase,protease	Stx2-converting_phage(36.36%)	49	NA	NA
WP_014528531.1|988607_989063_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_014528547.1|989578_990778_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.9	4.4e-93
WP_014528529.1|992253_993141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014528528.1|993799_995491_+	type IV secretion system ATPase VirD4	NA	NA	NA	NA	NA
WP_014528527.1|995858_996584_-	winged helix-turn-helix domain-containing protein	NA	W8CYM9	Bacillus_phage	30.7	1.1e-17
WP_011971014.1|997602_997908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088200107.1|997907_999473_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.4	2.1e-111
WP_011971016.1|999544_999892_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	54.9	1.0e-26
WP_011971017.1|999888_1000272_-	IS66 family insertion sequence hypothetical protein	NA	A0A1B0YZU7	Pseudomonas_phage	40.8	1.5e-07
WP_014528525.1|1000615_1001656_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA	NA
WP_014528524.1|1001695_1002814_-	type IV secretion system protein VirB10	NA	NA	NA	NA	NA
WP_014528523.1|1002810_1003692_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA	NA
WP_014528522.1|1003688_1004402_-	type IV secretion system protein VirB8	NA	NA	NA	NA	NA
WP_011970875.1|1004388_1004556_-	type IV secretion system lipoprotein VirB7	NA	NA	NA	NA	NA
WP_088200108.1|1004588_1005476_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_014528520.1|1005556_1006240_-	pilin minor subunit VirB5	NA	NA	NA	NA	NA
WP_014528519.1|1006253_1008623_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_003537077.1|1008622_1008949_-	type IV secretion system protein VirB3	NA	NA	NA	NA	NA
WP_014528518.1|1008945_1009308_-	pilin major subunit VirB2	NA	NA	NA	NA	NA
WP_014528517.1|1009321_1010029_-	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA	NA
WP_088200109.1|1010110_1010392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157717016.1|1010761_1011289_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_017268174.1|1012596_1012779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014528515.1|1013109_1014567_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_014528514.1|1014642_1015266_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_014528513.1|1015310_1015994_+	B3/4 domain-containing protein	NA	NA	NA	NA	NA
WP_014528512.1|1016855_1017548_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_088200225.1|1017845_1018907_-	stachydrine N-demethylase reductase subunit Stc4	NA	NA	NA	NA	NA
WP_088200110.1|1018911_1020150_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_014528508.1|1020297_1021176_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	26.6	1.6e-20
WP_012881237.1|1021622_1021916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014528507.1|1024117_1025560_+	glucoamylase	NA	NA	NA	NA	NA
WP_014528506.1|1025654_1027526_+	GMC family oxidoreductase	NA	NA	NA	NA	NA
WP_014528505.1|1027619_1028732_+	ferritin-like protein	NA	NA	NA	NA	NA
WP_014528504.1|1028728_1029208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014528503.1|1029246_1030185_+	myo-inosose-2 dehydratase	NA	NA	NA	NA	NA
WP_014528502.1|1030567_1031587_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_014528501.1|1031766_1032591_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_014528499.1|1032624_1034280_+	alpha-keto acid decarboxylase family protein	NA	M4QSI1	Ostreococcus_lucimarinus_virus	21.9	1.1e-14
WP_088200111.1|1034505_1034700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011971014.1|1035318_1035624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088200107.1|1035623_1037189_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.4	2.1e-111
WP_011971016.1|1037260_1037608_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	54.9	1.0e-26
WP_011971017.1|1037604_1037988_-	IS66 family insertion sequence hypothetical protein	NA	A0A1B0YZU7	Pseudomonas_phage	40.8	1.5e-07
WP_088200112.1|1038985_1039711_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014528496.1|1040560_1041010_-	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	47.5	3.3e-17
WP_127529204.1|1041633_1041924_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_014528493.1|1042538_1043957_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_010970069.1|1044874_1046209_-|transposase	ISNCY-like element ISRm17 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1597380	1049555	1054918	1597380		Sinorhizobium_phage(50.0%)	9	NA	NA
WP_017267611.1|1049555_1049765_-	hypothetical protein	NA	A0A291AUN9	Sinorhizobium_phage	86.2	3.3e-25
WP_127529153.1|1049884_1050244_-	hypothetical protein	NA	A0A291AUV7	Sinorhizobium_phage	68.3	1.7e-13
WP_086018973.1|1050243_1050504_-	chitinase	NA	A0A291AUV5	Sinorhizobium_phage	78.8	8.7e-31
WP_017267555.1|1051234_1051456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094179301.1|1051893_1052055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003535613.1|1052344_1052788_+	helix-turn-helix transcriptional regulator	NA	A0A1V0EEW3	Caulobacter_phage	51.7	2.7e-08
WP_015241594.1|1053929_1054376_-	DUF2280 domain-containing protein	NA	A0A125RNL6	Pseudomonas_phage	54.2	1.0e-31
WP_082325504.1|1054345_1054636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017267549.1|1054660_1054918_-	hypothetical protein	NA	F1C5D5	Cronobacter_phage	42.2	3.9e-15
