The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021927	Pediococcus pentosaceus strain SRCM100194 chromosome, complete genome	1757573	133654	144502	1757573		Bacillus_phage(28.57%)	12	NA	NA
WP_023440818.1|133654_134506_+	ParB/RepB/Spo0J family partition protein	NA	S5VTK0	Leptospira_phage	34.9	2.1e-12
WP_002834122.1|134519_134705_+	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_002834120.1|134922_136029_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_002834119.1|136057_136762_+	DUF1129 domain-containing protein	NA	NA	NA	NA	NA
WP_088355903.1|136783_137926_+	guanosine monophosphate reductase	NA	A0A1V0SHK8	Klosneuvirus	34.0	2.4e-64
WP_055126485.1|138056_138554_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	G5CRV0	Megavirus	36.4	6.4e-14
WP_002834114.1|138636_139326_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.3	5.7e-37
WP_011673829.1|139337_140474_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	25.8	2.8e-25
WP_088355904.1|140654_141911_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	23.8	1.3e-07
WP_002834111.1|142043_142832_+	branched-chain amino acid ABC transporter	NA	NA	NA	NA	NA
WP_002834110.1|142852_143185_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_011673827.1|143326_144502_-	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	33.3	4.8e-44
>prophage 2
NZ_CP021927	Pediococcus pentosaceus strain SRCM100194 chromosome, complete genome	1757573	364124	372992	1757573		Streptococcus_phage(33.33%)	10	NA	NA
WP_055126392.1|364124_366290_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.1	3.0e-249
WP_011673696.1|366391_366622_-	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	48.1	8.0e-12
WP_011673695.1|366833_367439_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011673694.1|367431_367917_+	nucleoside deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	31.6	1.8e-05
WP_011673693.1|368129_369875_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	48.4	2.8e-56
WP_002833269.1|369890_370205_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_002833270.1|370231_370831_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_002833271.1|370995_371625_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.7	2.0e-52
WP_002833272.1|371640_371976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011673692.1|371975_372992_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	30.6	2.5e-33
>prophage 3
NZ_CP021927	Pediococcus pentosaceus strain SRCM100194 chromosome, complete genome	1757573	382351	390915	1757573		Synechococcus_phage(33.33%)	9	NA	NA
WP_011673684.1|382351_382834_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.9	2.6e-20
WP_055126388.1|382817_383957_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002833286.1|383956_384685_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SLB8	Cyanophage	43.4	1.6e-42
WP_002833288.1|384677_384932_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_055126387.1|384934_385609_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_088355936.1|385626_387834_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.5	2.8e-146
WP_088355937.1|387818_389288_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.3	6.2e-57
WP_055126386.1|389287_390337_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D8KLC2	Synechococcus_phage	40.2	4.0e-58
WP_055126385.1|390333_390915_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.7	3.9e-23
>prophage 4
NZ_CP021927	Pediococcus pentosaceus strain SRCM100194 chromosome, complete genome	1757573	751740	761358	1757573	tRNA	Staphylococcus_phage(37.5%)	9	NA	NA
WP_002833201.1|751740_752211_+	nucleoside deoxyribosyltransferase	NA	A0A1G5S9Z4	Enterococcus_phage	40.1	3.8e-16
WP_002833200.1|752265_753150_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	38.1	2.1e-52
WP_088355963.1|753403_754612_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	G3MAR3	Bacillus_virus	40.0	3.5e-34
WP_088355964.1|754614_756492_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.7	5.9e-52
WP_011673474.1|756504_757455_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	62.7	3.4e-117
WP_088356194.1|757492_757969_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	38.1	3.2e-23
WP_011673472.1|758090_759542_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002833194.1|759538_760276_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	2.4e-33
WP_029258025.1|760512_761358_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.2	1.4e-16
>prophage 5
NZ_CP021927	Pediococcus pentosaceus strain SRCM100194 chromosome, complete genome	1757573	792674	860193	1757573	portal,capsid,terminase,tail,protease,head,holin,integrase	Lactobacillus_phage(77.78%)	73	784357:784374	845200:845217
784357:784374	attL	TTTTAAAAATAAAAGTTC	NA	NA	NA	NA
WP_088355970.1|792674_793748_-|integrase	site-specific integrase	integrase	Q9ZXG6	Leuconostoc_phage	36.0	4.0e-45
WP_061812078.1|793948_794503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088355971.1|794707_794905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088355972.1|794934_795201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088355973.1|795262_795673_-	ImmA/IrrE family metallo-endopeptidase	NA	E9LUL3	Lactobacillus_phage	38.4	7.3e-16
WP_088355974.1|795676_796024_-	helix-turn-helix transcriptional regulator	NA	Q9T1J3	Lactobacillus_phage	40.5	7.3e-17
WP_023440437.1|796284_796494_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_088355975.1|796509_796701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002831837.1|796672_797110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088355976.1|797169_797976_+	phage antirepressor protein	NA	A0A1Q1PVU2	Staphylococcus_phage	57.1	3.4e-81
WP_060743634.1|798021_798222_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
WP_029258001.1|798246_798468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088355977.1|798794_799004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088355978.1|799101_799356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029257999.1|799342_799546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088355979.1|799796_800429_+	ERF superfamily protein	NA	NA	NA	NA	NA
WP_088355980.1|800444_800843_+	single-stranded DNA-binding protein	NA	D6PSU2	Lactobacillus_phage	57.6	5.1e-38
WP_088355981.1|800853_801531_+	hypothetical protein	NA	E9LUU3	Lactobacillus_phage	67.8	1.2e-84
WP_088355982.1|801532_802285_+	hypothetical protein	NA	A0A1W6JNI1	Staphylococcus_phage	51.5	7.8e-56
WP_088355983.1|802265_803081_+	ATP-binding protein	NA	O03914	Lactobacillus_phage	47.1	1.3e-59
WP_088355984.1|803254_803725_+	hypothetical protein	NA	A0A0A7DMU0	Lactobacillus_phage	44.5	7.8e-22
WP_088355985.1|803714_803933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088355986.1|804113_804485_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_088355987.1|804556_805021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088355988.1|805223_805517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157668533.1|805518_805683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088355989.1|805683_805965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157668534.1|805957_806122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088355990.1|806143_806506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088355991.1|806581_806998_+	RNA polymerase subunit sigma-70	NA	O03925	Lactobacillus_phage	30.2	6.1e-10
WP_061812672.1|807658_808171_+	HNH endonuclease	NA	E9LUP7	Lactobacillus_phage	87.2	8.4e-78
WP_061812671.1|808176_808509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061812670.1|808672_809131_+|terminase	phage terminase small subunit P27 family	terminase	E9LUP8	Lactobacillus_phage	93.4	5.8e-78
WP_011673412.1|811088_811283_+	DUF1056 family protein	NA	E9LUQ0	Lactobacillus_phage	96.9	4.8e-26
WP_088355992.1|811285_812449_+|portal	phage portal protein	portal	E9LUQ1	Lactobacillus_phage	93.5	2.7e-209
WP_088355993.1|812426_813167_+|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	93.9	3.3e-123
WP_088355994.1|813181_814411_+|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	94.4	3.5e-215
WP_088355995.1|814483_814816_+|head,tail	phage gp6-like head-tail connector protein	head,tail	E9LUQ4	Lactobacillus_phage	82.4	2.0e-43
WP_088355996.1|814805_815153_+|head	phage head closure protein	head	A0A2P0ZLF0	Lactobacillus_phage	73.7	1.2e-43
WP_088355997.1|815155_815563_+	hypothetical protein	NA	A0A2P0ZLE6	Lactobacillus_phage	93.9	4.5e-66
WP_029257975.1|815562_815943_+	DUF806 family protein	NA	A0A2P0ZLF4	Lactobacillus_phage	86.5	9.3e-58
WP_088355998.1|815958_816624_+|tail	phage tail protein	tail	A0A2P0ZLH1	Lactobacillus_phage	94.9	6.8e-112
WP_061812660.1|816697_817072_+	hypothetical protein	NA	A0A2P0ZLH4	Lactobacillus_phage	94.4	5.4e-58
WP_088355999.1|817116_817302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088356000.1|817333_821917_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2P0ZLG0	Lactobacillus_phage	61.2	0.0e+00
WP_088356001.1|821980_823750_+|tail	phage tail protein	tail	E9LUR2	Lactobacillus_phage	66.3	7.6e-235
WP_061812657.1|823816_826165_+	hypothetical protein	NA	E9LUR3	Lactobacillus_phage	78.7	0.0e+00
WP_088356002.1|826166_829460_+	hypothetical protein	NA	A0A1S5RCP2	Lactobacillus_phage	30.1	2.6e-02
WP_061812824.1|829452_829680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088356003.1|829672_829864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029257966.1|829905_830163_+	hypothetical protein	NA	A0A0P0I3K6	Lactobacillus_phage	47.4	6.2e-05
WP_061812417.1|830193_830553_+	hypothetical protein	NA	E9LUR7	Lactobacillus_phage	77.3	7.3e-44
WP_088356195.1|830597_831728_+	LysM peptidoglycan-binding domain-containing protein	NA	O03950	Lactobacillus_phage	63.3	7.6e-39
WP_011673392.1|831727_831991_+|holin	holin	holin	E9LUR9	Lactobacillus_phage	85.1	6.1e-32
WP_088356004.1|832000_832366_+|holin	holin	holin	A0A2K9VCG4	Lactobacillus_phage	75.0	2.3e-21
WP_088356005.1|832483_832726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011673388.1|834888_835542_+	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_088356006.1|835528_836587_+	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA	NA
WP_011673386.1|836588_836927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088356007.1|836913_838959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011673384.1|841624_841951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088356008.1|842369_844400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088356009.1|846830_847694_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
845200:845217	attR	GAACTTTTATTTTTAAAA	NA	NA	NA	NA
WP_088356010.1|847680_848448_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	43.2	8.6e-26
WP_055126265.1|848488_849349_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	32.4	3.3e-26
WP_011673378.1|849448_850402_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_011673377.1|850545_851889_+	SLC45 family MFS transporter	NA	NA	NA	NA	NA
WP_088356011.1|851914_854167_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA	NA
WP_055126263.1|854182_854842_+	beta-phosphoglucomutase	NA	NA	NA	NA	NA
WP_055126262.1|855153_857226_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	34.8	9.9e-93
WP_088356012.1|857298_858204_+	tyrosine recombinase XerC	NA	A0A1I9SC88	Mycobacterium_phage	29.7	1.1e-16
WP_002833088.1|858222_858777_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_029257957.1|858777_860193_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IEP8	Erwinia_phage	25.2	3.9e-32
>prophage 6
NZ_CP021927	Pediococcus pentosaceus strain SRCM100194 chromosome, complete genome	1757573	927035	933388	1757573		Lactobacillus_phage(16.67%)	8	NA	NA
WP_002833631.1|927035_927557_-	DUF4373 domain-containing protein	NA	A0A0P0HRQ2	Lactobacillus_phage	57.1	4.0e-43
WP_055126228.1|927680_928418_-	3-oxoacyl-ACP reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.5	3.1e-17
WP_011673330.1|928418_928640_-	DUF2829 domain-containing protein	NA	G3MBC9	Bacillus_virus	33.3	2.0e-07
WP_011673329.1|928656_929139_-	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	35.0	4.9e-11
WP_011673327.1|929375_929846_+	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
WP_002833626.1|929974_930202_+	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002833625.1|930307_931432_-	molecular chaperone DnaJ	NA	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	33.2	1.3e-22
WP_011673326.1|931528_933388_-	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	47.2	5.3e-138
>prophage 7
NZ_CP021927	Pediococcus pentosaceus strain SRCM100194 chromosome, complete genome	1757573	1267456	1276713	1757573		Streptococcus_phage(33.33%)	7	NA	NA
WP_002834073.1|1267456_1268050_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	54.3	1.6e-56
WP_002834074.1|1268094_1268367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088356100.1|1268451_1270767_-	N-acetylmuramidase	NA	A0A0N7IR99	Lactobacillus_phage	47.4	5.0e-37
WP_002834077.1|1270943_1271873_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	4.0e-54
WP_023440059.1|1271885_1272887_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	56.7	3.9e-95
WP_088356101.1|1272883_1273771_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	32.2	4.0e-11
WP_023440058.1|1273869_1276713_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.9	1.9e-304
>prophage 8
NZ_CP021927	Pediococcus pentosaceus strain SRCM100194 chromosome, complete genome	1757573	1287915	1295533	1757573		Bacillus_phage(33.33%)	8	NA	NA
WP_023440049.1|1287915_1288674_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.5	1.7e-18
WP_011673074.1|1288687_1289488_-	phosphate ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	42.0	3.4e-09
WP_002834456.1|1289505_1290393_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_055126025.1|1290393_1291302_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_055126024.1|1291301_1292183_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	H6WG65	Cyanophage	25.9	9.3e-08
WP_002834459.1|1292344_1293730_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	33.3	6.3e-27
WP_002834460.1|1293701_1294406_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.3	6.9e-38
WP_132981263.1|1294416_1295533_-	peptide chain release factor 2	NA	B5LLF2	Mycobacterium_phage	47.1	1.9e-05
