assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	1	307103-307302	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	31	2	2	307134-307158|307190-307214	NZ_CP017091.1_307303-307327|NZ_CP017091.1_2182423-2182447	NA	3	3	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA|131aa|down_5|NZ_CP017091.1_312478_312871_+	NA|574aa|up_9|NZ_CP017091.1_294549_296271_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NZ_CP017091.1_296414_297089_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_7|NZ_CP017091.1_297350_299090_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NZ_CP017091.1_299092_299833_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NZ_CP017091.1_299945_300389_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NZ_CP017091.1_300381_301083_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NZ_CP017091.1_301423_303715_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NZ_CP017091.1_303940_304645_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP017091.1_304793_305585_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP017091.1_305600_307037_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_CP017091.1_307612_308374_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|NZ_CP017091.1_308625_309540_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|NZ_CP017091.1_309567_309972_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|NZ_CP017091.1_309986_310868_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|NZ_CP017091.1_311099_312098_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|NZ_CP017091.1_312478_312871_+	NA	NA|459aa|down_6|NZ_CP017091.1_312999_314376_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NZ_CP017091.1_314609_315602_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|NZ_CP017091.1_315927_316878_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|NZ_CP017091.1_316929_317589_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	2	660382-660490	2	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	39	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA|169aa|down_4|NZ_CP017091.1_664223_664730_+,NA|239aa|down_5|NZ_CP017091.1_664891_665608_+	NA|209aa|up_9|NZ_CP017091.1_649886_650513_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|NZ_CP017091.1_650782_651721_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|NZ_CP017091.1_652166_652703_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|NZ_CP017091.1_652872_653349_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|NZ_CP017091.1_653388_654684_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|NZ_CP017091.1_654711_655233_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|NZ_CP017091.1_655731_656742_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_2|NZ_CP017091.1_657050_657434_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP017091.1_657430_659092_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP017091.1_659576_660212_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP017091.1_660601_661429_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP017091.1_661579_662530_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP017091.1_662584_663304_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP017091.1_663287_664088_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP017091.1_664223_664730_+	NA	NA|239aa|down_5|NZ_CP017091.1_664891_665608_+	NA	NA|263aa|down_6|NZ_CP017091.1_665776_666565_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP017091.1_666816_667191_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP017091.1_668138_669068_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP017091.1_669260_669485_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	3	822530-822612	3	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	CACCCCAACTCGCATTGCTTGTAGAA	26	1	26	822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586|822556-822586	NZ_CP017091.1_916900-916870|NZ_CP017091.1_955701-955731|NZ_CP017091.1_2037287-2037317|NZ_CP017091.1_2037397-2037427|NZ_CP017091.1_2096604-2096634|NZ_CP017091.1_289115-289145|NZ_CP017091.1_289173-289203|NZ_CP017091.1_289231-289261|NZ_CP017091.1_382915-382885|NZ_CP017091.1_651879-651849|NZ_CP017091.1_776243-776213|NZ_CP017091.1_867531-867561|NZ_CP017091.1_1055218-1055248|NZ_CP017091.1_1157045-1157015|NZ_CP017091.1_1157099-1157069|NZ_CP017091.1_1804920-1804890|NZ_CP017091.1_1895663-1895633|NZ_CP017091.1_2345845-2345875|NZ_CP017091.1_2390914-2390884|NZ_CP017091.1_831537-831567|NZ_CP017091.1_871669-871639|NZ_CP017091.1_1367065-1367095|NZ_CP017091.1_1413154-1413184|NZ_CP017091.1_1712447-1712477|NZ_CP017091.1_2356593-2356623|NZ_CP017091.1_2792037-2792067	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA	NA|280aa|up_9|NZ_CP017091.1_809779_810619_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP017091.1_810792_811443_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP017091.1_811439_811676_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP017091.1_811944_813930_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP017091.1_813937_816784_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP017091.1_817393_818326_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP017091.1_818331_819171_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP017091.1_819178_819664_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP017091.1_819671_821111_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_CP017091.1_821177_822113_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP017091.1_822880_823792_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP017091.1_823788_824784_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP017091.1_824892_825837_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP017091.1_826406_826994_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NZ_CP017091.1_827176_828811_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NZ_CP017091.1_829017_829920_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NZ_CP017091.1_830622_831252_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_CP017091.1_832026_833040_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP017091.1_833092_834103_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP017091.1_834241_835432_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	4	871938-872018	4	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	TCTTTATCATTTCTGTCCCACTCCC	25	1	1	871963-871993	NZ_CP017091.1_816983-816953	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|38aa|up_6|NZ_CP017091.1_866124_866238_+,NA|105aa|down_7|NZ_CP017091.1_879624_879939_-	NA|107aa|up_9|NZ_CP017091.1_864701_865022_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_8|NZ_CP017091.1_865165_865522_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_7|NZ_CP017091.1_865679_866060_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_6|NZ_CP017091.1_866124_866238_+	NA	NA|293aa|up_5|NZ_CP017091.1_866239_867118_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|up_4|NZ_CP017091.1_867875_868262_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|up_3|NZ_CP017091.1_868254_868551_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|up_2|NZ_CP017091.1_868800_869826_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|up_1|NZ_CP017091.1_869818_870514_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_0|NZ_CP017091.1_870531_871353_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_0|NZ_CP017091.1_872160_872355_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_1|NZ_CP017091.1_872588_873440_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_2|NZ_CP017091.1_873767_874529_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_3|NZ_CP017091.1_874627_875935_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_4|NZ_CP017091.1_876049_877291_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|155aa|down_5|NZ_CP017091.1_877280_877745_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|466aa|down_6|NZ_CP017091.1_877895_879293_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|105aa|down_7|NZ_CP017091.1_879624_879939_-	NA	NA|347aa|down_8|NZ_CP017091.1_880307_881348_+	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|356aa|down_9|NZ_CP017091.1_881361_882429_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	5	1712375-1712465	5	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	CATTGCCTGTAGAATTTCTTTACGAAATTCTCT	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA|49aa|down_3|NZ_CP017091.1_1716489_1716636_-,NA|43aa|down_8|NZ_CP017091.1_1719672_1719801_-	NA|208aa|up_9|NZ_CP017091.1_1701142_1701766_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP017091.1_1701765_1703034_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP017091.1_1703045_1703969_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP017091.1_1703971_1704610_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP017091.1_1704894_1705203_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP017091.1_1705217_1705646_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP017091.1_1705649_1705910_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP017091.1_1705972_1708603_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP017091.1_1708945_1711423_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP017091.1_1711424_1712093_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP017091.1_1712667_1713786_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP017091.1_1713786_1714929_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP017091.1_1715239_1716253_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP017091.1_1716489_1716636_-	NA	NA|61aa|down_4|NZ_CP017091.1_1716675_1716858_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP017091.1_1716957_1717380_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP017091.1_1717464_1718739_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP017091.1_1718899_1719673_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP017091.1_1719672_1719801_-	NA	NA|589aa|down_9|NZ_CP017091.1_1720133_1721900_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	6	1807353-1807435	6	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	GAAGCTGACGAAAAAGTCAGCTTAC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA,NA	NA|454aa|up_9|NZ_CP017091.1_1792186_1793548_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_8|NZ_CP017091.1_1793891_1795649_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_7|NZ_CP017091.1_1795670_1796639_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_6|NZ_CP017091.1_1796907_1797852_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_5|NZ_CP017091.1_1797851_1798709_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_4|NZ_CP017091.1_1798903_1800133_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_3|NZ_CP017091.1_1800581_1803779_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_2|NZ_CP017091.1_1803799_1804741_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|up_1|NZ_CP017091.1_1805110_1806409_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|NZ_CP017091.1_1806613_1807027_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|NZ_CP017091.1_1807532_1808222_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|NZ_CP017091.1_1808396_1809452_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|NZ_CP017091.1_1809767_1810886_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|NZ_CP017091.1_1811026_1811527_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|NZ_CP017091.1_1811773_1812976_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|NZ_CP017091.1_1813063_1814011_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|NZ_CP017091.1_1814133_1814628_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|NZ_CP017091.1_1814725_1815496_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|NZ_CP017091.1_1815539_1816763_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|NZ_CP017091.1_1816762_1817911_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	7	1895672-1895765	7	CRISPRCasFinder	no	csa3	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Type I-A	GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	34	1	1	1895706-1895731	NZ_CP017091.1_2037359-2037334	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|75aa|up_5|NZ_CP017091.1_1891765_1891990_-,NA|148aa|up_2|NZ_CP017091.1_1893201_1893645_-,NA|101aa|down_1|NZ_CP017091.1_1896899_1897202_+	NA|501aa|up_9|NZ_CP017091.1_1886797_1888300_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_8|NZ_CP017091.1_1888942_1889257_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_7|NZ_CP017091.1_1889256_1890549_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|285aa|up_6|NZ_CP017091.1_1890635_1891490_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|up_5|NZ_CP017091.1_1891765_1891990_-	NA	NA|157aa|up_4|NZ_CP017091.1_1892188_1892659_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|148aa|up_3|NZ_CP017091.1_1892771_1893215_+	pfam06338, ComK, ComK protein	NA|148aa|up_2|NZ_CP017091.1_1893201_1893645_-	NA	NA|212aa|up_1|NZ_CP017091.1_1893942_1894578_+	pfam02517, Abi, CAAX protease self-immunity	NA|207aa|up_0|NZ_CP017091.1_1894744_1895365_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_0|NZ_CP017091.1_1895927_1896641_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_1|NZ_CP017091.1_1896899_1897202_+	NA	NA|122aa|down_2|NZ_CP017091.1_1897456_1897822_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_3|NZ_CP017091.1_1897818_1898172_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_4|NZ_CP017091.1_1898421_1899255_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|303aa|down_5|NZ_CP017091.1_1899466_1900375_-	pfam08378, NERD, Nuclease-related domain	NA|398aa|down_6|NZ_CP017091.1_1900499_1901693_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|531aa|down_7|NZ_CP017091.1_1902064_1903657_+	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|249aa|down_8|NZ_CP017091.1_1903953_1904700_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|158aa|down_9|NZ_CP017091.1_1904704_1905178_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	8	2171349-2171561	8	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	47	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|46aa|up_4|NZ_CP017091.1_2168210_2168348_-,NA|107aa|down_0|NZ_CP017091.1_2171594_2171915_+	NA|232aa|up_9|NZ_CP017091.1_2160902_2161598_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|507aa|up_8|NZ_CP017091.1_2161950_2163471_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|452aa|up_7|NZ_CP017091.1_2163986_2165342_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|357aa|up_6|NZ_CP017091.1_2165356_2166427_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|401aa|up_5|NZ_CP017091.1_2166744_2167947_+	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|46aa|up_4|NZ_CP017091.1_2168210_2168348_-	NA	NA|70aa|up_3|NZ_CP017091.1_2168475_2168685_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|98aa|up_2|NZ_CP017091.1_2168696_2168990_-	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|495aa|up_1|NZ_CP017091.1_2169155_2170640_+	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|216aa|up_0|NZ_CP017091.1_2170667_2171315_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|107aa|down_0|NZ_CP017091.1_2171594_2171915_+	NA	NA|291aa|down_1|NZ_CP017091.1_2173556_2174429_-	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|214aa|down_2|NZ_CP017091.1_2174514_2175156_-	PRK00043, thiE, thiamine phosphate synthase	NA|264aa|down_3|NZ_CP017091.1_2175157_2175949_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|277aa|down_4|NZ_CP017091.1_2175932_2176763_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|230aa|down_5|NZ_CP017091.1_2176755_2177445_-	TIGR04306, salvage_TenA, thiaminase II	NA|232aa|down_6|NZ_CP017091.1_2177831_2178527_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|132aa|down_7|NZ_CP017091.1_2178915_2179311_-	pfam00436, SSB, Single-strand binding protein family	NA|168aa|down_8|NZ_CP017091.1_2179441_2179945_+	pfam14183, YwpF, YwpF-like protein	NA|147aa|down_9|NZ_CP017091.1_2180001_2180442_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	9	2226980-2227130	9	CRISPRCasFinder	no	csa3,TnsE_C	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|77aa|up_5|NZ_CP017091.1_2221852_2222083_-,NA|364aa|up_0|NZ_CP017091.1_2225870_2226962_+,NA|35aa|down_0|NZ_CP017091.1_2227459_2227564_-,NA|53aa|down_1|NZ_CP017091.1_2228243_2228402_+,NA|31aa|down_2|NZ_CP017091.1_2228837_2228930_+,NA|107aa|down_9|NZ_CP017091.1_2235345_2235666_-	NA|237aa|up_9|NZ_CP017091.1_2217462_2218173_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP017091.1_2218293_2218737_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP017091.1_2218936_2219350_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP017091.1_2219807_2221181_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP017091.1_2221852_2222083_-	NA	NA|313aa|up_4|NZ_CP017091.1_2222113_2223052_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP017091.1_2223485_2224151_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP017091.1_2224302_2224623_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP017091.1_2224624_2225605_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP017091.1_2225870_2226962_+	NA	NA|35aa|down_0|NZ_CP017091.1_2227459_2227564_-	NA	NA|53aa|down_1|NZ_CP017091.1_2228243_2228402_+	NA	NA|31aa|down_2|NZ_CP017091.1_2228837_2228930_+	NA	NA|286aa|down_3|NZ_CP017091.1_2229059_2229917_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP017091.1_2229984_2230767_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|203aa|down_5|NZ_CP017091.1_2231056_2231665_-	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|345aa|down_6|NZ_CP017091.1_2231692_2232727_-	pfam13676, TIR_2, TIR domain	NA|97aa|down_7|NZ_CP017091.1_2234348_2234639_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	TnsE_C|135aa|down_8|NZ_CP017091.1_2234763_2235168_-	pfam18623, TnsE_C, TnsE C-terminal domain	NA|107aa|down_9|NZ_CP017091.1_2235345_2235666_-	NA
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	10	2390966-2391051	10	CRISPRCasFinder	no	WYL	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	6	2390996-2391021|2390996-2391021|2390996-2391021|2390996-2391021|2390996-2391021|2390996-2391021	NZ_CP017091.1_867620-867595|NZ_CP017091.1_871740-871765|NZ_CP017091.1_916675-916700|NZ_CP017091.1_1362736-1362761|NZ_CP017091.1_2182461-2182486|NZ_CP017091.1_2522912-2522887	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|65aa|up_6|NZ_CP017091.1_2383710_2383905_-,NA|78aa|down_1|NZ_CP017091.1_2392001_2392235_-,NA|110aa|down_8|NZ_CP017091.1_2400323_2400653_+	NA|248aa|up_9|NZ_CP017091.1_2379498_2380242_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|652aa|up_8|NZ_CP017091.1_2380267_2382223_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|270aa|up_7|NZ_CP017091.1_2382832_2383642_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|65aa|up_6|NZ_CP017091.1_2383710_2383905_-	NA	NA|467aa|up_5|NZ_CP017091.1_2384078_2385479_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|361aa|up_4|NZ_CP017091.1_2385573_2386656_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|141aa|up_3|NZ_CP017091.1_2386903_2387326_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|up_2|NZ_CP017091.1_2387562_2388063_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|318aa|up_1|NZ_CP017091.1_2388425_2389379_+	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|375aa|up_0|NZ_CP017091.1_2389470_2390595_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|213aa|down_0|NZ_CP017091.1_2391203_2391842_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|78aa|down_1|NZ_CP017091.1_2392001_2392235_-	NA	NA|158aa|down_2|NZ_CP017091.1_2392529_2393003_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|985aa|down_3|NZ_CP017091.1_2393002_2395957_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|308aa|down_4|NZ_CP017091.1_2396558_2397482_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|266aa|down_5|NZ_CP017091.1_2397638_2398436_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	WYL|231aa|down_6|NZ_CP017091.1_2398820_2399513_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|246aa|down_7|NZ_CP017091.1_2399537_2400275_-	pfam02517, Abi, CAAX protease self-immunity	NA|110aa|down_8|NZ_CP017091.1_2400323_2400653_+	NA	NA|291aa|down_9|NZ_CP017091.1_2401097_2401970_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	11	2567175-2567269	11	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	AGGCTCTTATGCAGTTGGTGCGAAGCAA	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|249aa|up_9|NZ_CP017091.1_2556760_2557507_+,NA|121aa|down_0|NZ_CP017091.1_2567937_2568300_-,NA|105aa|down_8|NZ_CP017091.1_2575112_2575427_+	NA|249aa|up_9|NZ_CP017091.1_2556760_2557507_+	NA	NA|398aa|up_8|NZ_CP017091.1_2557730_2558924_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|up_7|NZ_CP017091.1_2558935_2559685_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_6|NZ_CP017091.1_2559677_2560493_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|up_5|NZ_CP017091.1_2560489_2561359_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_4|NZ_CP017091.1_2561355_2562291_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|up_3|NZ_CP017091.1_2562303_2563902_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|up_2|NZ_CP017091.1_2564044_2565346_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_1|NZ_CP017091.1_2565338_2566157_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|up_0|NZ_CP017091.1_2566167_2566989_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|121aa|down_0|NZ_CP017091.1_2567937_2568300_-	NA	NA|273aa|down_1|NZ_CP017091.1_2568562_2569381_-	PRK08589, PRK08589, SDR family oxidoreductase	NA|513aa|down_2|NZ_CP017091.1_2569614_2571153_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|141aa|down_3|NZ_CP017091.1_2571264_2571687_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|133aa|down_4|NZ_CP017091.1_2572158_2572557_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|down_5|NZ_CP017091.1_2572583_2572994_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|128aa|down_6|NZ_CP017091.1_2573448_2573832_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|403aa|down_7|NZ_CP017091.1_2573898_2575107_+	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|105aa|down_8|NZ_CP017091.1_2575112_2575427_+	NA	NA|140aa|down_9|NZ_CP017091.1_2577303_2577723_-	pfam07252, DUF1433, Protein of unknown function (DUF1433)
GCF_002204575.1_ASM220457v1	NZ_CP017091	Staphylococcus aureus subsp. aureus strain ISU926, complete genome	12	2595120-2595230	12	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG,TnsE_C	Orphan	GGTACTTCTGGTGTCGGTGGCGTTGGT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG,TnsE_C	NA|89aa|up_3|NZ_CP017091.1_2589423_2589690_+,NA|103aa|up_2|NZ_CP017091.1_2589833_2590142_+,NA|98aa|down_0|NZ_CP017091.1_2598036_2598330_-	NA|262aa|up_9|NZ_CP017091.1_2582169_2582955_-	pfam04507, DUF576, Csa1 family	NA|255aa|up_8|NZ_CP017091.1_2583202_2583967_-	pfam04507, DUF576, Csa1 family	NA|258aa|up_7|NZ_CP017091.1_2584078_2584852_-	pfam04507, DUF576, Csa1 family	NA|310aa|up_6|NZ_CP017091.1_2585094_2586024_-	pfam09019, EcoRII-C, EcoRII C terminal	NA|398aa|up_5|NZ_CP017091.1_2586119_2587313_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|584aa|up_4|NZ_CP017091.1_2587388_2589140_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|89aa|up_3|NZ_CP017091.1_2589423_2589690_+	NA	NA|103aa|up_2|NZ_CP017091.1_2589833_2590142_+	NA	NA|289aa|up_1|NZ_CP017091.1_2590267_2591134_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|952aa|up_0|NZ_CP017091.1_2591313_2594169_-	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|98aa|down_0|NZ_CP017091.1_2598036_2598330_-	NA	NA|453aa|down_1|NZ_CP017091.1_2598370_2599729_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|518aa|down_2|NZ_CP017091.1_2599845_2601399_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|226aa|down_3|NZ_CP017091.1_2601423_2602101_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|255aa|down_4|NZ_CP017091.1_2602257_2603022_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|231aa|down_5|NZ_CP017091.1_2603186_2603879_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|139aa|down_6|NZ_CP017091.1_2604109_2604526_-	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|608aa|down_7|NZ_CP017091.1_2604664_2606488_-	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|426aa|down_8|NZ_CP017091.1_2607399_2608677_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|204aa|down_9|NZ_CP017091.1_2609223_2609835_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
