assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	1	170741-170861	1	CRISPRCasFinder	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	TTTTCATCGCCGGGCCGCCCCAAGATGAAAACGCCCCC	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|77aa|up_5|NZ_CP020917.1_164265_164496_-,NA	NA|450aa|up_9|NZ_CP020917.1_150143_151493_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|653aa|up_8|NZ_CP020917.1_151788_153747_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|488aa|up_7|NZ_CP020917.1_161756_163220_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|234aa|up_6|NZ_CP020917.1_163426_164128_+	pfam11254, DUF3053, Protein of unknown function (DUF3053)	NA|77aa|up_5|NZ_CP020917.1_164265_164496_-	NA	NA|602aa|up_4|NZ_CP020917.1_164618_166424_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|592aa|up_3|NZ_CP020917.1_166584_168360_-	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA	NA|324aa|up_2|NZ_CP020917.1_168463_169435_+	pfam01075, Glyco_transf_9, Glycosyltransferase family 9 (heptosyltransferase)	NA|255aa|up_1|NZ_CP020917.1_169447_170212_+	cd06259, YdcF-like, YdcF-like	NA|90aa|up_0|NZ_CP020917.1_170257_170527_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|197aa|down_0|NZ_CP020917.1_170953_171544_+	cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain	NA|387aa|down_1|NZ_CP020917.1_171540_172701_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|242aa|down_2|NZ_CP020917.1_172675_173401_-	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|370aa|down_3|NZ_CP020917.1_173503_174613_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|251aa|down_4|NZ_CP020917.1_174609_175362_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|283aa|down_5|NZ_CP020917.1_175358_176207_-	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins	NA|367aa|down_6|NZ_CP020917.1_176203_177304_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|1164aa|down_7|NZ_CP020917.1_177303_180795_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|300aa|down_8|NZ_CP020917.1_180910_181810_+	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO	NA|432aa|down_9|NZ_CP020917.1_181855_183151_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	2	961901-961972	2	CRISPRCasFinder	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	CCGGCGTTCTTGCCCTGCGCCAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|127aa|up_6|NZ_CP020917.1_952561_952942_-,NA	NA|234aa|up_9|NZ_CP020917.1_945860_946562_-	pfam18160, SLATT_5, SMODS and SLOG-associating 2TM effector domain family 5	NA|1558aa|up_8|NZ_CP020917.1_946775_951449_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|290aa|up_7|NZ_CP020917.1_951624_952494_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|127aa|up_6|NZ_CP020917.1_952561_952942_-	NA	NA|119aa|up_5|NZ_CP020917.1_953588_953945_-	pfam01381, HTH_3, Helix-turn-helix	NA|400aa|up_4|NZ_CP020917.1_954236_955436_-	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|330aa|up_3|NZ_CP020917.1_956289_957279_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|392aa|up_2|NZ_CP020917.1_957388_958564_-	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|466aa|up_1|NZ_CP020917.1_958560_959958_-	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|314aa|up_0|NZ_CP020917.1_960039_960981_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|752aa|down_0|NZ_CP020917.1_962611_964867_-	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type	NA|335aa|down_1|NZ_CP020917.1_965164_966169_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|283aa|down_2|NZ_CP020917.1_966165_967014_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|313aa|down_3|NZ_CP020917.1_967037_967976_-	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily	NA|282aa|down_4|NZ_CP020917.1_968205_969051_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|278aa|down_5|NZ_CP020917.1_969044_969878_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|156aa|down_6|NZ_CP020917.1_970005_970473_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|249aa|down_7|NZ_CP020917.1_970494_971241_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|326aa|down_8|NZ_CP020917.1_971361_972339_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|454aa|down_9|NZ_CP020917.1_972628_973990_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	3	962288-962358	3	CRISPRCasFinder	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	CCGGCGTTCTTGCCCTGCGCCAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|127aa|up_6|NZ_CP020917.1_952561_952942_-,NA	NA|234aa|up_9|NZ_CP020917.1_945860_946562_-	pfam18160, SLATT_5, SMODS and SLOG-associating 2TM effector domain family 5	NA|1558aa|up_8|NZ_CP020917.1_946775_951449_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|290aa|up_7|NZ_CP020917.1_951624_952494_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|127aa|up_6|NZ_CP020917.1_952561_952942_-	NA	NA|119aa|up_5|NZ_CP020917.1_953588_953945_-	pfam01381, HTH_3, Helix-turn-helix	NA|400aa|up_4|NZ_CP020917.1_954236_955436_-	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]	NA|330aa|up_3|NZ_CP020917.1_956289_957279_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|392aa|up_2|NZ_CP020917.1_957388_958564_-	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|466aa|up_1|NZ_CP020917.1_958560_959958_-	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|314aa|up_0|NZ_CP020917.1_960039_960981_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|752aa|down_0|NZ_CP020917.1_962611_964867_-	TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific, Pseudomonas-type	NA|335aa|down_1|NZ_CP020917.1_965164_966169_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|283aa|down_2|NZ_CP020917.1_966165_967014_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|313aa|down_3|NZ_CP020917.1_967037_967976_-	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily	NA|282aa|down_4|NZ_CP020917.1_968205_969051_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|278aa|down_5|NZ_CP020917.1_969044_969878_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|156aa|down_6|NZ_CP020917.1_970005_970473_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|249aa|down_7|NZ_CP020917.1_970494_971241_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|326aa|down_8|NZ_CP020917.1_971361_972339_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|454aa|down_9|NZ_CP020917.1_972628_973990_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	4	1061481-1061569	4	CRISPRCasFinder	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	CCCGCGCCGGTGTACGTGGCGCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|50aa|up_1|NZ_CP020917.1_1060173_1060323_-,NA|53aa|down_0|NZ_CP020917.1_1061811_1061970_-,NA|83aa|down_1|NZ_CP020917.1_1061956_1062205_-	NA|551aa|up_9|NZ_CP020917.1_1050306_1051959_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|283aa|up_8|NZ_CP020917.1_1052131_1052980_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|529aa|up_7|NZ_CP020917.1_1053038_1054625_-	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|327aa|up_6|NZ_CP020917.1_1054795_1055776_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|302aa|up_5|NZ_CP020917.1_1055814_1056720_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|376aa|up_4|NZ_CP020917.1_1056736_1057864_-	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily	NA|293aa|up_3|NZ_CP020917.1_1058025_1058904_+	cd08427, PBP2_LTTR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|398aa|up_2|NZ_CP020917.1_1058916_1060110_-	PRK05985, PRK05985, cytosine deaminase; Provisional	NA|50aa|up_1|NZ_CP020917.1_1060173_1060323_-	NA	NA|168aa|up_0|NZ_CP020917.1_1060562_1061066_+	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb	NA|53aa|down_0|NZ_CP020917.1_1061811_1061970_-	NA	NA|83aa|down_1|NZ_CP020917.1_1061956_1062205_-	NA	NA|449aa|down_2|NZ_CP020917.1_1062435_1063782_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|447aa|down_3|NZ_CP020917.1_1063824_1065165_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|264aa|down_4|NZ_CP020917.1_1065242_1066034_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|423aa|down_5|NZ_CP020917.1_1066187_1067456_+	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase	NA|520aa|down_6|NZ_CP020917.1_1067606_1069166_+	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|314aa|down_7|NZ_CP020917.1_1069398_1070340_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_8|NZ_CP020917.1_1070472_1071342_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|336aa|down_9|NZ_CP020917.1_1071344_1072352_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	5	2489205-2491393	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCGCTGCCGCATAGGCAGCTAAGAAA,GTTCGCTGCCGCATAGGCAGCTAAGAAA,GTTCGCTGCCGCATAGGCAGCTAAGAAA	28,28,28	1	1	2491154-2491185	NZ_CP020917.1_1017587-1017556	I-F:I-F:I-F	36,36,36	36	TypeI-F	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|289aa|up_9|NZ_CP020917.1_2477031_2477898_-	PRK08905, PRK08905, lysophospholipid acyltransferase family protein	NA|388aa|up_8|NZ_CP020917.1_2478180_2479344_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	cas1|334aa|up_7|NZ_CP020917.1_2479615_2480617_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1170aa|up_6|NZ_CP020917.1_2480613_2484123_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|95aa|up_5|NZ_CP020917.1_2484172_2484457_-	pfam12441, CopG_antitoxin, CopG antitoxin of type II toxin-antitoxin system	NA|101aa|up_4|NZ_CP020917.1_2484446_2484749_-	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	cas8f|467aa|up_3|NZ_CP020917.1_2484935_2486336_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|362aa|up_2|NZ_CP020917.1_2486332_2487418_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|343aa|up_1|NZ_CP020917.1_2487473_2488502_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|up_0|NZ_CP020917.1_2488507_2489074_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|476aa|down_0|NZ_CP020917.1_2491485_2492913_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|439aa|down_1|NZ_CP020917.1_2492915_2494232_-	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|336aa|down_2|NZ_CP020917.1_2494313_2495321_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|308aa|down_3|NZ_CP020917.1_2495348_2496272_-	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|328aa|down_4|NZ_CP020917.1_2496398_2497382_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|474aa|down_5|NZ_CP020917.1_2497435_2498857_+	PRK12466, PRK12466, 3-isopropylmalate dehydratase large subunit	NA|217aa|down_6|NZ_CP020917.1_2498853_2499504_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|301aa|down_7|NZ_CP020917.1_2499571_2500474_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|79aa|down_8|NZ_CP020917.1_2500561_2500798_+	COG3313, COG3313, Predicted Fe-S protein [General function prediction only]	NA|364aa|down_9|NZ_CP020917.1_2500898_2501990_+	cd03814, GT4-like, glycosyltransferase family 4 proteins
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	6	2880338-2880555	6	CRISPRCasFinder	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	AAGCGCCCCCTCGGGGGGCAGCAAGCACGCAACGCGTGCGCGGCGTGGGGGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|281aa|up_9|NZ_CP020917.1_2870025_2870868_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|408aa|up_8|NZ_CP020917.1_2870969_2872193_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|285aa|up_7|NZ_CP020917.1_2872206_2873061_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|339aa|up_6|NZ_CP020917.1_2873274_2874291_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|120aa|up_5|NZ_CP020917.1_2874403_2874763_+	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|231aa|up_4|NZ_CP020917.1_2875687_2876380_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|251aa|up_3|NZ_CP020917.1_2876379_2877132_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|323aa|up_2|NZ_CP020917.1_2877124_2878093_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|305aa|up_1|NZ_CP020917.1_2878104_2879019_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|392aa|up_0|NZ_CP020917.1_2879079_2880255_-	cd06359, PBP1_Nba-like, type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway	NA|403aa|down_0|NZ_CP020917.1_2880559_2881768_-	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|451aa|down_1|NZ_CP020917.1_2881786_2883139_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|338aa|down_2|NZ_CP020917.1_2883175_2884189_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|128aa|down_3|NZ_CP020917.1_2884181_2884565_-	smart00830, CM_2, Chorismate mutase type II	NA|213aa|down_4|NZ_CP020917.1_2884561_2885200_-	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|322aa|down_5|NZ_CP020917.1_2885252_2886218_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|420aa|down_6|NZ_CP020917.1_2886306_2887566_-	PRK07538, PRK07538, hypothetical protein; Provisional	NA|233aa|down_7|NZ_CP020917.1_2887568_2888267_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|351aa|down_8|NZ_CP020917.1_2888346_2889399_-	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase	NA|312aa|down_9|NZ_CP020917.1_2889571_2890507_+	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	7	3710779-3710908	7	CRISPRCasFinder	no	WYL	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Unclear	GGGGGGCAGCAAGCGGGCGTAGCCTGCGCAGCGTGGGGGC	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|287aa|up_9|NZ_CP020917.1_3700565_3701426_-,NA	NA|287aa|up_9|NZ_CP020917.1_3700565_3701426_-	NA	NA|156aa|up_8|NZ_CP020917.1_3701568_3702036_-	COG5615, COG5615, Predicted integral membrane protein [Function unknown]	NA|170aa|up_7|NZ_CP020917.1_3702190_3702700_+	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional	NA|338aa|up_6|NZ_CP020917.1_3702678_3703692_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|873aa|up_5|NZ_CP020917.1_3703812_3706431_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|349aa|up_4|NZ_CP020917.1_3706494_3707541_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|278aa|up_3|NZ_CP020917.1_3707551_3708385_+	cd01149, HutB, Hemin binding protein HutB	NA|316aa|up_2|NZ_CP020917.1_3708428_3709376_+	pfam01032, FecCD, FecCD transport family	NA|262aa|up_1|NZ_CP020917.1_3709375_3710161_+	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional	NA|161aa|up_0|NZ_CP020917.1_3710230_3710713_+	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed	NA|302aa|down_0|NZ_CP020917.1_3710917_3711823_+	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|482aa|down_1|NZ_CP020917.1_3711836_3713282_-	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional	NA|183aa|down_2|NZ_CP020917.1_3713424_3713973_+	PRK10286, PRK10286, methylated-DNA--[protein]-cysteine S-methyltransferase	NA|362aa|down_3|NZ_CP020917.1_3714056_3715142_+	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase	NA|327aa|down_4|NZ_CP020917.1_3715231_3716212_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|202aa|down_5|NZ_CP020917.1_3716215_3716821_-	PRK11837, PRK11837, undecaprenyl pyrophosphate phosphatase; Provisional	NA|143aa|down_6|NZ_CP020917.1_3716912_3717341_-	PRK10026, PRK10026, arsenate reductase (glutaredoxin)	NA|512aa|down_7|NZ_CP020917.1_3717406_3718942_-	pfam03929, PepSY_TM, PepSY-associated TM region	NA|734aa|down_8|NZ_CP020917.1_3718965_3721167_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|138aa|down_9|NZ_CP020917.1_3721327_3721741_-	pfam11162, DUF2946, Protein of unknown function (DUF2946)
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	8	3818630-3818734	8	CRISPRCasFinder	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GCGCGCTTGCTGCCCCCCGAGGGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|291aa|up_7|NZ_CP020917.1_3808315_3809188_+,NA	NA|273aa|up_9|NZ_CP020917.1_3806226_3807045_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|387aa|up_8|NZ_CP020917.1_3807111_3808272_-	PRK07337, PRK07337, pyridoxal phosphate-dependent aminotransferase	NA|291aa|up_7|NZ_CP020917.1_3808315_3809188_+	NA	NA|763aa|up_6|NZ_CP020917.1_3809307_3811596_+	PRK12861, PRK12861, malic enzyme; Reviewed	NA|386aa|up_5|NZ_CP020917.1_3811645_3812803_+	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|156aa|up_4|NZ_CP020917.1_3812799_3813267_+	pfam01337, Barstar, Barstar (barnase inhibitor)	NA|244aa|up_3|NZ_CP020917.1_3813272_3814004_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|679aa|up_2|NZ_CP020917.1_3814242_3816279_+	PRK12753, PRK12753, transketolase; Reviewed	NA|337aa|up_1|NZ_CP020917.1_3816293_3817304_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|398aa|up_0|NZ_CP020917.1_3817399_3818593_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|328aa|down_0|NZ_CP020917.1_3818761_3819745_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|539aa|down_1|NZ_CP020917.1_3820096_3821713_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|258aa|down_2|NZ_CP020917.1_3821728_3822502_-	PRK07533, PRK07533, enoyl-[acyl-carrier-protein] reductase FabI	NA|395aa|down_3|NZ_CP020917.1_3822498_3823683_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|315aa|down_4|NZ_CP020917.1_3823738_3824683_-	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated	NA|829aa|down_5|NZ_CP020917.1_3824682_3827169_-	pfam11339, DUF3141, Protein of unknown function (DUF3141)	NA|135aa|down_6|NZ_CP020917.1_3827343_3827748_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|212aa|down_7|NZ_CP020917.1_3827775_3828411_-	PRK15113, PRK15113, glutathione transferase	NA|110aa|down_8|NZ_CP020917.1_3828475_3828805_-	cd06990, cupin_DUF861, domain of unknown function DUF 861, cupin domain	NA|162aa|down_9|NZ_CP020917.1_3828865_3829351_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	9	4463202-4463307	9	CRISPRCasFinder	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	TTTTTGTCTTGGGGCGGCCCTGCGA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|256aa|up_9|NZ_CP020917.1_4451730_4452498_-	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|262aa|up_8|NZ_CP020917.1_4452629_4453415_+	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|333aa|up_7|NZ_CP020917.1_4453580_4454579_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|168aa|up_6|NZ_CP020917.1_4454622_4455126_-	COG4314, NosL, Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]	NA|277aa|up_5|NZ_CP020917.1_4455122_4455953_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|300aa|up_4|NZ_CP020917.1_4455949_4456849_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|433aa|up_3|NZ_CP020917.1_4456845_4458144_-	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD	NA|639aa|up_2|NZ_CP020917.1_4458149_4460066_-	PRK02888, PRK02888, nitrous-oxide reductase; Validated	NA|749aa|up_1|NZ_CP020917.1_4460182_4462429_-	COG3901, NosR, Regulator of nitric oxide reductase transcription [Transcription]	NA|150aa|up_0|NZ_CP020917.1_4462712_4463162_+	cd13922, Azurin, Azurin is a redox partner for enzymes such as nitrite reductase or arsenite oxidase	NA|528aa|down_0|NZ_CP020917.1_4463445_4465029_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|288aa|down_1|NZ_CP020917.1_4465047_4465911_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|256aa|down_2|NZ_CP020917.1_4466717_4467485_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|down_3|NZ_CP020917.1_4467477_4467987_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|228aa|down_4|NZ_CP020917.1_4468121_4468805_-	sd00006, TPR, Tetratricopeptide repeat	NA|485aa|down_5|NZ_CP020917.1_4469082_4470537_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|214aa|down_6|NZ_CP020917.1_4470557_4471199_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|322aa|down_7|NZ_CP020917.1_4471235_4472201_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|355aa|down_8|NZ_CP020917.1_4472262_4473327_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|422aa|down_9|NZ_CP020917.1_4473503_4474769_+	PRK06635, PRK06635, aspartate kinase; Reviewed
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	10	4981055-4981256	2	PILER-CR	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	CGCCTCCTACGGCTCCGAGCGCCGCGAAGGCCGCCCGGGCCAGCGCCCCTCC	52	1	1	4981199-4981236	NZ_CP020917.1_4981437-4981474	NA	2	2	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|132aa|down_1|NZ_CP020917.1_4983112_4983508_-	NA|235aa|up_9|NZ_CP020917.1_4969651_4970356_+	PRK05282, PRK05282, dipeptidase PepE	NA|310aa|up_8|NZ_CP020917.1_4970352_4971282_+	pfam06675, DUF1177, Protein of unknown function (DUF1177)	NA|236aa|up_7|NZ_CP020917.1_4971278_4971986_+	pfam07302, AroM, AroM protein	NA|328aa|up_6|NZ_CP020917.1_4972102_4973086_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|399aa|up_5|NZ_CP020917.1_4973739_4974936_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|174aa|up_4|NZ_CP020917.1_4975102_4975624_-	PRK00376, lspA, lipoprotein signal peptidase	NA|954aa|up_3|NZ_CP020917.1_4975626_4978488_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|116aa|up_2|NZ_CP020917.1_4978750_4979098_-	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|322aa|up_1|NZ_CP020917.1_4979087_4980053_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|217aa|up_0|NZ_CP020917.1_4980178_4980829_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|449aa|down_0|NZ_CP020917.1_4981748_4983095_+	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|132aa|down_1|NZ_CP020917.1_4983112_4983508_-	NA	NA|403aa|down_2|NZ_CP020917.1_4983862_4985071_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|765aa|down_3|NZ_CP020917.1_4985067_4987362_+	PRK11773, uvrD, DNA-dependent helicase II; Provisional	NA|102aa|down_4|NZ_CP020917.1_4987367_4987673_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|645aa|down_5|NZ_CP020917.1_4987728_4989663_-	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional	NA|299aa|down_6|NZ_CP020917.1_4989659_4990556_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|387aa|down_7|NZ_CP020917.1_4990639_4991800_-	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed	NA|274aa|down_8|NZ_CP020917.1_4991799_4992621_-	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|405aa|down_9|NZ_CP020917.1_4992645_4993860_-	PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional
GCF_002205315.1_ASM220531v1	NZ_CP020917	Achromobacter denitrificans strain PR1 chromosome, complete genome	11	6207153-6207290	10	CRISPRCasFinder	no		DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GTGGGCCCCCACGCTGCGCACGCTTGCGCGTGCTTGCTGCCCCC	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,PD-DExK,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|165aa|up_6|NZ_CP020917.1_6199812_6200307_+,NA	NA|428aa|up_9|NZ_CP020917.1_6196392_6197676_-	cd06330, PBP1_As_SBP-like, periplasmic substrate-binding domain of active transport proteins	NA|246aa|up_8|NZ_CP020917.1_6198039_6198777_+	COG1378, COG1378, Predicted transcriptional regulators [Transcription]	NA|300aa|up_7|NZ_CP020917.1_6198827_6199727_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|165aa|up_6|NZ_CP020917.1_6199812_6200307_+	NA	NA|184aa|up_5|NZ_CP020917.1_6200400_6200952_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|397aa|up_4|NZ_CP020917.1_6201142_6202333_+	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6	NA|71aa|up_3|NZ_CP020917.1_6202423_6202636_-	pfam04328, Sel_put, Selenoprotein, putative	NA|696aa|up_2|NZ_CP020917.1_6202652_6204740_-	PRK15015, PRK15015, carbon starvation protein CstA	NA|473aa|up_1|NZ_CP020917.1_6205054_6206473_+	COG4564, COG4564, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|219aa|up_0|NZ_CP020917.1_6206469_6207126_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|182aa|down_0|NZ_CP020917.1_6207649_6208195_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|331aa|down_1|NZ_CP020917.1_6208969_6209962_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|343aa|down_2|NZ_CP020917.1_6210231_6211260_+	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|280aa|down_3|NZ_CP020917.1_6211343_6212183_+	COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]	NA|276aa|down_4|NZ_CP020917.1_6212175_6213003_+	PRK10160, PRK10160, taurine ABC transporter permease TauC	NA|532aa|down_5|NZ_CP020917.1_6213142_6214738_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|472aa|down_6|NZ_CP020917.1_6214717_6216133_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|131aa|down_7|NZ_CP020917.1_6216167_6216560_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|326aa|down_8|NZ_CP020917.1_6216743_6217721_-	cd03112, CobW-like, cobalamin synthesis protein CobW	NA|550aa|down_9|NZ_CP020917.1_6217722_6219372_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases
