The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	96980	140993	4884508	coat,holin,portal,integrase,lysis,terminase,protease	Enterobacteria_phage(66.67%)	67	88374:88390	150208:150224
88374:88390	attL	ACGCGAATTTCAATATC	NA	NA	NA	NA
WP_000915528.1|96980_97343_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
WP_000703639.1|97339_98272_+	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	100.0	5.5e-176
WP_000671496.1|98261_99719_+	glucosyltransferase domain-containing protein	NA	A8CG94	Salmonella_phage	100.0	1.3e-240
WP_000129933.1|99777_101781_-	endorhamnosidase	NA	Q76H47	Enterobacteria_phage	100.0	0.0e+00
WP_000532177.1|101916_102165_+	Arc family DNA-binding protein	NA	Q76H48	Enterobacteria_phage	100.0	1.8e-38
WP_071533035.1|102185_102479_-	hypothetical protein	NA	Q76H12	Enterobacteria_phage	100.0	3.2e-50
WP_001029860.1|102617_104594_-	hypothetical protein	NA	Q76H13	Enterobacteria_phage	100.0	0.0e+00
WP_000246977.1|104593_106030_-	phage DNA ejection protein	NA	Q76H14	Enterobacteria_phage	100.0	7.7e-246
WP_000964904.1|106040_106730_-	hypothetical protein	NA	A0A2H5BFK5	Salmonella_phage	100.0	2.9e-118
WP_023206220.1|106732_107188_-	DUF2824 family protein	NA	E7C9U3	Salmonella_phage	99.3	5.2e-87
WP_000774919.1|107187_107826_-	hypothetical protein	NA	A8CGD2	Salmonella_phage	100.0	6.3e-91
WP_006819470.1|107829_109248_-	packaged DNA stabilization protein gp10	NA	A0A220NQZ5	Salmonella_phage	100.0	4.9e-277
WP_058678159.1|109207_109708_-	packaged DNA stabilization gp4 family protein	NA	I6RSF6	Salmonella_phage	99.4	3.2e-90
WP_000538670.1|109691_110252_-	hypothetical protein	NA	C6ZR11	Salmonella_phage	100.0	9.8e-104
WP_001196937.1|110292_111585_-|coat	coat protein	coat	Q76H21	Enterobacteria_phage	100.0	1.1e-243
WP_006831698.1|111584_112496_-	scaffolding protein	NA	Q5C834	Enterobacteria_phage	100.0	1.7e-161
WP_000774652.1|112509_114687_-|portal	portal protein	portal	Q76H23	Enterobacteria_phage	100.0	0.0e+00
WP_006819463.1|114686_116186_-|terminase	terminase large subunit	terminase	Q5C836	Enterobacteria_phage	100.0	1.7e-307
WP_000729923.1|116163_116652_-	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
WP_001687044.1|116655_117060_-	hypothetical protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
WP_001140562.1|117059_117449_-	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
WP_000808099.1|117452_117695_-	DUF2560 family protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
WP_001541885.1|117990_118443_-|lysis	lysis protein	lysis	E7C9T0	Salmonella_phage	100.0	5.0e-74
WP_001194317.1|118439_118838_-	M15 family metallopeptidase	NA	E7C9S9	Salmonella_phage	100.0	1.1e-69
WP_001129219.1|118824_119142_-|holin	phage holin family protein	holin	E7C9S8	Salmonella_phage	100.0	1.1e-54
WP_000027541.1|119541_120060_-	DUF1133 family protein	NA	A0A192Y911	Salmonella_phage	100.0	9.0e-96
WP_058678158.1|120056_120236_-	hypothetical protein	NA	A0A192Y814	Salmonella_phage	98.3	1.2e-23
WP_000149882.1|120216_120420_-	phage NinH family protein	NA	I6RSQ6	Salmonella_phage	100.0	7.2e-33
WP_000036320.1|120416_120641_-	hypothetical protein	NA	Q76H69	Enterobacteria_phage	100.0	6.3e-38
WP_001108073.1|120637_121249_-	recombination protein NinG	NA	Q76H70	Enterobacteria_phage	100.0	7.9e-99
WP_000950963.1|121241_121418_-	protein ninF	NA	Q76H71	Enterobacteria_phage	100.0	6.7e-27
WP_001532927.1|121410_121752_-	DUF2591 family protein	NA	Q76H72	Enterobacteria_phage	100.0	2.1e-64
WP_000113770.1|121754_121931_-	NinE family protein	NA	Q76H73	Enterobacteria_phage	100.0	1.0e-27
WP_000679703.1|121897_122071_-	hypothetical protein	NA	Q76H74	Enterobacteria_phage	100.0	2.3e-32
WP_000736891.1|122067_122505_-	recombination protein NinB	NA	Q76H49	Enterobacteria_phage	100.0	4.5e-80
WP_001036030.1|122578_122848_-	hypothetical protein	NA	Q76H50	Enterobacteria_phage	100.0	4.9e-45
WP_001248410.1|122844_124221_-	AAA family ATPase	NA	Q76H51	Enterobacteria_phage	100.0	1.9e-254
WP_000539342.1|124217_125039_-	replication protein	NA	Q76H52	Enterobacteria_phage	100.0	5.2e-154
WP_000166961.1|125025_125187_-	hypothetical protein	NA	Q76H53	Enterobacteria_phage	100.0	1.3e-21
WP_001103492.1|125221_125503_-	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
WP_000182204.1|125613_125829_-	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	100.0	1.3e-32
WP_000712403.1|125939_126629_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	100.0	1.3e-126
WP_001532928.1|126793_127873_+	hypothetical protein	NA	A0A192Y6S0	Salmonella_phage	100.0	1.5e-193
WP_000834175.1|127911_128115_-	hypothetical protein	NA	A0A2H5BFH9	Salmonella_phage	100.0	2.0e-27
WP_000216178.1|128478_128781_+	hypothetical protein	NA	Q76H58	Enterobacteria_phage	100.0	9.7e-50
WP_001066179.1|128793_129381_-	super-infection exclusion protein B	NA	Q76H59	Enterobacteria_phage	100.0	1.4e-100
WP_000213982.1|129594_129789_+	Restriction inhibitor protein ral	NA	Q76H34	Enterobacteria_phage	100.0	1.9e-30
WP_192941093.1|129872_130592_+	pentapeptide repeat-containing protein	NA	Q76H35	Enterobacteria_phage	88.3	2.0e-45
WP_000713613.1|130625_130913_+	hypothetical protein	NA	Q76H36	Enterobacteria_phage	100.0	2.7e-49
WP_000776963.1|131188_131503_+	Superinfection exclusion protein	NA	Q76H37	Enterobacteria_phage	100.0	1.5e-56
WP_000141641.1|131587_131746_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.4e-23
WP_000156731.1|131726_131915_+	DUF5444 family protein	NA	I6S647	Salmonella_phage	100.0	3.7e-31
WP_000902092.1|131904_132048_+	hypothetical protein	NA	A0A2H5BFM6	Salmonella_phage	100.0	6.4e-20
WP_001046968.1|132044_132752_+	recombinase	NA	Q76H40	Enterobacteria_phage	100.0	3.1e-139
WP_001253476.1|132751_133036_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
WP_001111291.1|133082_133376_+	DUF2856 family protein	NA	Q76H42	Enterobacteria_phage	100.0	1.4e-48
WP_001214777.1|133386_133557_+	DUF2737 family protein	NA	Q76H43	Enterobacteria_phage	100.0	1.6e-25
WP_000812203.1|133553_134063_+	hypothetical protein	NA	Q76H44	Enterobacteria_phage	100.0	2.8e-89
WP_071533029.1|134059_134293_+	Lar family restriction alleviation protein	NA	NA	NA	NA	NA
WP_025617570.1|134279_134924_+	ead/Ea22-like family protein	NA	Q76H45	Enterobacteria_phage	99.5	1.4e-122
WP_000371199.1|134923_135208_+	DUF4752 family protein	NA	Q76H46	Enterobacteria_phage	100.0	1.6e-49
WP_000002104.1|135200_135485_+	ASCH domain-containing protein	NA	Q76H28	Enterobacteria_phage	100.0	1.4e-50
WP_155675089.1|135553_135694_+	hypothetical protein	NA	A0A0M4QWX3	Salmonella_phage	97.8	4.2e-16
WP_000051897.1|135923_137087_+|integrase	site-specific integrase	integrase	Q76H30	Enterobacteria_phage	100.0	3.7e-230
WP_000893231.1|137292_138543_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
WP_001285275.1|138554_139658_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
WP_001043675.1|139940_140993_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
150208:150224	attR	ACGCGAATTTCAATATC	NA	NA	NA	NA
>prophage 2
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	897211	944255	4884508	plate,holin,tRNA,tail	Burkholderia_phage(40.91%)	50	NA	NA
WP_001182237.1|897211_898210_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_001039339.1|898297_899608_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000416272.1|899854_900370_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|900468_900678_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010989093.1|900699_900813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128116.1|900809_902135_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|902313_902922_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002902.1|903030_903399_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017359.1|903569_905990_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|906088_906961_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000019219.1|906974_907472_-	chorismate lyase	NA	NA	NA	NA	NA
WP_000782504.1|907652_908570_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973645.1|908733_910092_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|910180_911290_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695417.1|911651_912842_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000382573.1|912973_914518_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_001252085.1|914532_915423_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982749.1|915588_915999_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_000750804.1|916141_918238_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000977979.1|918237_918975_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_014343934.1|918971_919640_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_001541297.1|919673_919916_-	outer membrane protein	NA	NA	NA	NA	NA
WP_000790037.1|920359_922009_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136400.1|922353_923703_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|923835_924183_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_001226442.1|924758_925046_+|holin	putative holin	holin	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_058678114.1|925048_925654_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	3.2e-60
WP_000777266.1|925666_925981_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_000449433.1|926140_926596_+	Gp37 family protein	NA	NA	NA	NA	NA
WP_000875314.1|926592_926790_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000729852.1|926779_928207_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000907494.1|928206_928731_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_001003642.1|928782_929100_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185654.1|929059_929188_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001262500.1|929284_931639_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	6.9e-66
WP_000271423.1|931638_932592_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_001269716.1|932591_932801_+|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000818154.1|932788_933832_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_000679398.1|933841_934564_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000593182.1|934891_935254_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000703632.1|935250_936180_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
WP_001095011.1|936179_937727_+	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_001093501.1|937890_938250_+	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_000951736.1|938240_939356_+|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_000359500.1|939348_939981_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_058678115.1|939983_941729_+|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	7.1e-52
WP_001526208.1|941733_942339_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000084331.1|942335_942791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989092.1|943039_943330_+	membrane protein	NA	NA	NA	NA	NA
WP_000587738.1|943526_944255_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
>prophage 3
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	2483105	2488906	4884508		Enterobacteria_phage(100.0%)	8	NA	NA
WP_000783717.1|2483105_2485439_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	84.7	0.0e+00
WP_000795388.1|2485453_2485774_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001216603.1|2485770_2485998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015701354.1|2485994_2486546_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.4	1.1e-30
WP_000556594.1|2486542_2486809_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	69.3	3.7e-29
WP_000149860.1|2487346_2488084_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	64.4	9.0e-81
WP_000984209.1|2488080_2488323_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	77.8	5.2e-30
WP_000210082.1|2488339_2488906_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	63.2	4.1e-57
>prophage 4
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	2529253	2537070	4884508	integrase	Salmonella_virus(45.45%)	12	2524280:2524294	2537240:2537254
2524280:2524294	attL	CCCGTCGTGAAGCCA	NA	NA	NA	NA
WP_000752587.1|2529253_2529478_-	TraR/DksA family transcriptional regulator	NA	Q6K1F5	Salmonella_virus	98.6	1.1e-34
WP_001246236.1|2529477_2529705_-	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	98.7	2.6e-31
WP_000963466.1|2529772_2530111_-	DUF5347 domain-containing protein	NA	A0A218M4I7	Erwinia_phage	92.9	2.3e-52
WP_000920166.1|2530074_2530275_-	DUF2724 domain-containing protein	NA	Q6K1F7	Salmonella_virus	92.4	9.6e-30
WP_000883911.1|2530282_2530792_-	phage regulatory CII family protein	NA	Q6K1F8	Salmonella_virus	98.8	3.6e-89
WP_001278192.1|2530842_2531196_-	hypothetical protein	NA	Q6K1F9	Salmonella_virus	100.0	2.3e-58
WP_001096998.1|2531309_2532155_+	phage repressor protein CI	NA	Q6K1G0	Salmonella_virus	73.7	4.9e-115
WP_000823622.1|2532163_2532502_+	DUF2511 domain-containing protein	NA	A0A0M3ULF8	Salmonella_phage	72.1	1.4e-41
WP_000218691.1|2532526_2533576_+|integrase	site-specific integrase	integrase	A0A0M4S6G4	Salmonella_phage	90.3	5.4e-188
WP_001030985.1|2533828_2535049_-	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
WP_001212379.1|2535041_2535560_-	YfiR family protein	NA	NA	NA	NA	NA
WP_001168062.1|2535999_2537070_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
2537240:2537254	attR	TGGCTTCACGACGGG	NA	NA	NA	NA
>prophage 5
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	2558801	2636845	4884508	capsid,transposase,holin,portal,integrase,lysis,terminase,protease,head,tail,tRNA	Salmonella_phage(36.21%)	91	2552258:2552274	2642692:2642708
2552258:2552274	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
WP_000183639.1|2558801_2559482_-|tRNA	tRNA-uridine aminocarboxypropyltransferase	tRNA	NA	NA	NA	NA
WP_001098732.1|2559554_2559974_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000997368.1|2560177_2561215_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_000179978.1|2561330_2562020_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000627811.1|2562338_2562722_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000188414.1|2562783_2563371_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_001526875.1|2563473_2564373_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000219174.1|2564390_2565725_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_000083343.1|2565855_2566593_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000989177.1|2566577_2568200_-	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_014344135.1|2568463_2568628_+	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_000003307.1|2568624_2569200_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_001168374.1|2569231_2569882_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000812017.1|2569881_2570838_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_000589087.1|2570834_2571314_+	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_001007939.1|2571811_2573041_+|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.4	2.9e-233
WP_001670787.1|2573018_2573303_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
WP_001237031.1|2573343_2573583_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_014344386.1|2573625_2574783_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
WP_020979242.1|2574745_2577673_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
WP_001539619.1|2577799_2578150_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
WP_000917562.1|2578171_2578330_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
WP_000950426.1|2578786_2579449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000356948.1|2579448_2579835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001111772.1|2579827_2580667_-	AAA family ATPase	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
WP_000660736.1|2580725_2581121_-	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
WP_000643689.1|2581220_2581463_+	helix-turn-helix domain-containing protein	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
WP_010835408.1|2581422_2581797_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
WP_001738749.1|2581888_2582725_+	replication protein	NA	K7PGT1	Enterobacteria_phage	48.5	4.6e-49
WP_000801764.1|2582721_2583417_+	hypothetical protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
WP_000664368.1|2583430_2584129_+	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
WP_000877757.1|2584236_2584869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217669.1|2585111_2585345_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_014343878.1|2585461_2585710_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_000929791.1|2585744_2586347_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_001096550.1|2586555_2587167_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
WP_000801757.1|2587163_2587304_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_001097241.1|2587300_2587978_+	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
WP_000211410.1|2588250_2588814_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
WP_000657897.1|2589320_2589509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001110783.1|2589723_2590410_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
WP_001574216.1|2590685_2591015_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_015701345.1|2590998_2591451_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.0e-79
WP_001533543.1|2591468_2591921_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000669690.1|2592156_2592558_-	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_001102153.1|2592844_2593390_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000623091.1|2593361_2595293_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
WP_000201415.1|2595276_2595480_+	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_001738454.1|2595568_2597056_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	63.3	5.8e-180
WP_001189503.1|2597045_2598542_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
WP_000011260.1|2598554_2598902_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_000522566.1|2598956_2599985_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000201486.1|2600042_2600402_+	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000083294.1|2600412_2600796_+|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
WP_000677089.1|2600823_2601402_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000817263.1|2601450_2602581_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
WP_000033885.1|2602689_2603091_+|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000971954.1|2603098_2603845_+	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000479607.1|2603895_2604291_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_010989052.1|2604287_2604626_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000372065.1|2604597_2607693_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	1.7e-274
WP_000447369.1|2607695_2608025_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_001152689.1|2608034_2608733_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_015701343.1|2608739_2609477_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	3.0e-129
WP_000246126.1|2609374_2610022_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000514917.1|2610083_2613446_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
WP_000178853.1|2613484_2613727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058678128.1|2613780_2616153_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	68.6	5.6e-92
WP_000593433.1|2616149_2616974_+	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
WP_000143154.1|2616963_2617542_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
WP_010989049.1|2617638_2617866_-	phage virulence factor PagK family protein	NA	NA	NA	NA	NA
WP_001738443.1|2617972_2618185_+	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
WP_001526383.1|2618937_2619057_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001542312.1|2619769_2619907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989047.1|2620367_2621861_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
WP_000790154.1|2622265_2624065_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_000002559.1|2624081_2625056_+	signal peptidase I	NA	NA	NA	NA	NA
WP_001068341.1|2625329_2626010_+	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000102232.1|2626006_2626912_+	GTPase Era	NA	NA	NA	NA	NA
WP_000399380.1|2626923_2627652_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000818972.1|2627663_2628395_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000986043.1|2628394_2628775_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_001196290.1|2628886_2629147_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_001022463.1|2629184_2630111_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
WP_001276370.1|2630226_2631423_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_000684022.1|2631444_2632362_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000995703.1|2632400_2633249_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001048530.1|2633364_2634258_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000361663.1|2634268_2635630_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_000253558.1|2635633_2636269_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_001134566.1|2636293_2636845_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
2642692:2642708	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 6
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	2990284	3019876	4884508	holin,tail,protease	Salmonella_phage(41.67%)	31	NA	NA
WP_000781589.1|2990284_2990779_-|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
WP_000228070.1|2991192_2991684_+	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
WP_001260058.1|2991673_2991937_+	chaperone NapD	NA	NA	NA	NA	NA
WP_000778097.1|2991933_2994420_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA	NA
WP_000091673.1|2994426_2995122_+	ferredoxin-type protein NapG	NA	NA	NA	NA	NA
WP_000013529.1|2995108_2995978_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA	NA
WP_000835182.1|2996093_2996543_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA	NA
WP_000431778.1|2996552_2997155_+	cytochrome c-type protein NapC	NA	NA	NA	NA	NA
WP_000990028.1|2997788_2998448_+	heme exporter protein CcmB	NA	NA	NA	NA	NA
WP_000266008.1|2998499_2999237_+	heme ABC transporter permease	NA	NA	NA	NA	NA
WP_000074110.1|2999233_2999446_+	heme exporter protein CcmD	NA	NA	NA	NA	NA
WP_001053618.1|2999442_2999922_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA	NA
WP_000982518.1|2999918_3001850_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA	NA
WP_000828296.1|3001846_3002404_+	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA	NA
WP_001238333.1|3002400_3003444_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA	NA
WP_001115498.1|3003487_3004135_-	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA	NA
WP_000281877.1|3004864_3005428_+	acyloxyacyl hydrolase	NA	NA	NA	NA	NA
WP_001653202.1|3005619_3005823_-	virulence protein MsgA	NA	NA	NA	NA	NA
WP_000624225.1|3006125_3006917_+|tail	tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
WP_001113462.1|3007213_3007417_+|tail	tail protein	tail	NA	NA	NA	NA
WP_001115840.1|3007585_3009952_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
WP_001202279.1|3010280_3011270_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
WP_010989045.1|3011284_3011653_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_000894640.1|3011681_3013013_-	AAA family ATPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
WP_001120499.1|3013309_3013639_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_000554739.1|3014231_3015473_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001215679.1|3015475_3016003_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000022213.1|3016380_3016824_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_000639473.1|3016877_3018707_-	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000884778.1|3019054_3019345_-	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000806401.1|3019372_3019876_+	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
>prophage 7
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	3091927	3101098	4884508	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|3091927_3092875_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
WP_000824855.1|3092858_3093590_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|3093570_3093678_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|3093737_3094469_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272845.1|3094691_3096377_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_000598637.1|3096373_3097093_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|3097139_3097607_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197952.1|3097663_3098194_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|3098365_3098824_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195332.1|3099064_3101098_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 8
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	3169406	3178572	4884508		Enterobacteria_phage(42.86%)	9	NA	NA
WP_001111841.1|3169406_3170810_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
WP_000981469.1|3170987_3171881_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697840.1|3172257_3173343_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_001023662.1|3173342_3174242_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000857529.1|3174289_3175168_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
WP_000973708.1|3175168_3175720_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
WP_000018226.1|3175725_3176718_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648784.1|3176714_3177488_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565905.1|3177492_3178572_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
>prophage 9
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	3265906	3316659	4884508	capsid,plate,holin,portal,integrase,lysis,terminase,head,protease,tail	Salmonella_phage(90.48%)	68	3260484:3260498	3276960:3276974
3260484:3260498	attL	AATCAGCGCCTGCTG	NA	NA	NA	NA
WP_001219015.1|3265906_3266380_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
WP_000598920.1|3267689_3268487_-	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_058678096.1|3268778_3269768_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	99.4	1.2e-194
WP_001527041.1|3269769_3269997_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	3.2e-37
WP_001061334.1|3270036_3270606_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
WP_000208068.1|3270609_3271443_-	hypothetical protein	NA	Q8HAA7	Salmonella_phage	100.0	4.7e-163
WP_000065095.1|3271439_3272057_-	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	100.0	2.6e-113
WP_000071070.1|3272053_3272569_-	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	7.4e-98
WP_000764235.1|3272565_3272796_-	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
WP_000008351.1|3272866_3273406_-	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000080415.1|3273542_3274370_-	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	100.0	7.5e-153
WP_000997190.1|3274427_3274799_-	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_001020636.1|3275613_3276309_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
WP_001191666.1|3276406_3276631_+	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_000509731.1|3276659_3277214_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
3276960:3276974	attR	AATCAGCGCCTGCTG	NA	NA	NA	NA
WP_001087402.1|3277210_3278368_+	Rha family transcriptional regulator	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
WP_000620702.1|3278364_3278589_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_000061500.1|3278585_3279404_+	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
WP_001684745.1|3279405_3279888_+	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
WP_000066908.1|3279887_3280781_+	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
WP_001241579.1|3280777_3281167_+	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
WP_001061457.1|3281183_3282044_+	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	100.0	2.9e-163
WP_001202277.1|3282051_3283041_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	4.9e-191
WP_000188927.1|3283051_3283675_+	hypothetical protein	NA	Q8HA89	Salmonella_phage	100.0	9.1e-119
WP_001527054.1|3283807_3284065_+	hypothetical protein	NA	Q8HA88	Salmonella_phage	100.0	5.2e-44
WP_014343859.1|3283994_3284429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001527046.1|3284590_3284935_+|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
WP_001005901.1|3284937_3285552_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	100.0	9.3e-116
WP_001050825.1|3285548_3286034_+|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	100.0	5.9e-81
WP_000877027.1|3286246_3286666_+	KilA-N domain-containing protein	NA	Q8HA84	Salmonella_phage	100.0	4.8e-71
WP_001292890.1|3286885_3287188_+	hypothetical protein	NA	Q8HA83	Salmonella_phage	100.0	3.6e-52
WP_001135225.1|3287248_3287599_+	HNH endonuclease	NA	Q8HA82	Salmonella_phage	100.0	2.5e-65
WP_000929191.1|3287724_3288219_+|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	4.6e-89
WP_000088182.1|3288215_3289949_+|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	100.0	0.0e+00
WP_000605609.1|3289960_3290143_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
WP_000466254.1|3290142_3291384_+|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.8	2.0e-242
WP_001193639.1|3291361_3292012_+|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
WP_000257528.1|3292026_3293232_+|capsid	phage major capsid protein	capsid	Q8HAD2	Salmonella_phage	100.0	1.6e-223
WP_000601353.1|3293282_3293483_+	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
WP_000927378.1|3293485_3293809_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
WP_000702408.1|3293805_3294210_+|head	phage head closure protein	head	Q8HAC9	Salmonella_phage	100.0	1.4e-72
WP_001135697.1|3294181_3294694_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
WP_000779218.1|3294690_3295251_+	hypothetical protein	NA	Q8HAC7	Salmonella_phage	100.0	3.0e-105
WP_000497739.1|3295254_3295419_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
WP_001007991.1|3295408_3296905_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	Q8HAC5	Salmonella_phage	100.0	2.7e-278
WP_000515952.1|3296904_3297261_+|tail	phage tail tube protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_000588852.1|3297257_3297584_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
WP_000785385.1|3297668_3299597_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.8	0.0e+00
WP_000863818.1|3299630_3300971_+	DNA circularization N-terminal domain-containing protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
WP_001066636.1|3300967_3302026_+	hypothetical protein	NA	Q8HAC0	Salmonella_phage	100.0	1.3e-202
WP_001273649.1|3302025_3302559_+|plate	phage baseplate assembly protein	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
WP_000605050.1|3302563_3302977_+	phage GP46 family protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
WP_058678095.1|3302948_3303497_+|plate	baseplate J/gp47 family protein	plate	Q8HAB7	Salmonella_phage	99.5	2.3e-97
WP_001738350.1|3303531_3304053_+|plate	baseplate J/gp47 family protein	plate	Q8HAB6	Salmonella_phage	99.4	1.5e-93
WP_001207832.1|3304055_3304643_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
WP_000554736.1|3304629_3306192_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	99.8	7.5e-287
WP_015701331.1|3306161_3306761_+|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	5.9e-107
WP_000492926.1|3307045_3308053_-	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
WP_001526483.1|3308265_3308487_+	helix-turn-helix domain-containing protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
WP_000500831.1|3309117_3309279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394196.1|3309405_3309825_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000457662.1|3309827_3311096_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_000208509.1|3311550_3311763_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131109.1|3311773_3311962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080680.1|3312222_3313419_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
WP_000107430.1|3314068_3314368_+	membrane protein	NA	NA	NA	NA	NA
WP_000377041.1|3314459_3315155_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_001157322.1|3315228_3316659_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 10
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	4216016	4300752	4884508	holin,portal,lysis,terminase,tail,protease,tRNA	Salmonella_phage(44.44%)	92	NA	NA
WP_000938191.1|4216016_4216697_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
WP_000374050.1|4217317_4217977_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000904446.1|4218063_4218393_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|4218389_4218671_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000548082.1|4218719_4219499_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000859419.1|4219524_4220073_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000140480.1|4220287_4221499_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|4221556_4221874_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|4221918_4222332_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|4222505_4223168_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|4223262_4223721_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000420505.1|4223756_4225811_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_001261222.1|4225934_4226381_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950880.1|4226399_4228553_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202375.1|4228539_4229145_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|4229361_4229871_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001674965.1|4230227_4231280_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877172.1|4231351_4231804_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156453.1|4231989_4233750_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|4233818_4234337_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001537784.1|4234436_4234604_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|4234859_4235423_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_058678108.1|4235419_4237060_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333152.1|4237064_4238318_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053044.1|4238332_4240240_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_001086485.1|4240252_4242361_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000224069.1|4242459_4243569_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|4243565_4244108_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291723.1|4244273_4245284_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000193784.1|4245491_4248104_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_000497441.1|4248530_4248722_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_001525490.1|4248992_4249679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989011.1|4249663_4249963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000334547.1|4250031_4250658_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_001533476.1|4251305_4252274_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.7	7.9e-194
WP_000143167.1|4252749_4253331_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_001144679.1|4253330_4255769_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
WP_000178849.1|4255822_4256065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000033415.1|4256103_4259454_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
WP_000246065.1|4259525_4260230_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
WP_000606351.1|4260127_4260865_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
WP_001152415.1|4260874_4261570_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
WP_000877926.1|4261659_4262193_+	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_000725267.1|4262309_4262807_-	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000978296.1|4262905_4263238_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
WP_010989010.1|4263234_4266222_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
WP_010989009.1|4266301_4266631_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_000478859.1|4266627_4267026_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_000132756.1|4267071_4267821_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000196702.1|4267832_4268234_-|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
WP_000453194.1|4268230_4268797_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
WP_000774239.1|4268777_4269077_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_001107908.1|4269069_4269393_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_010989008.1|4269483_4271565_-|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
WP_001009207.1|4271488_4273036_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.3	2.8e-177
WP_000196190.1|4273032_4273239_-	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_000989241.1|4273235_4275374_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
WP_000371784.1|4275330_4275864_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_001541990.1|4276071_4276551_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_079812846.1|4276568_4277021_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	96.6	1.5e-78
WP_001574216.1|4277004_4277334_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001141973.1|4277609_4278296_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
WP_000798705.1|4278656_4279106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001534733.1|4279241_4279367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989004.1|4279540_4279858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047631.1|4279924_4280722_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
WP_001617856.1|4280711_4280858_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001096552.1|4280854_4281466_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
WP_000929805.1|4281674_4282277_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
WP_000807548.1|4282359_4282581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217665.1|4282692_4282926_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_014343823.1|4283217_4283508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000065108.1|4283585_4283897_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
WP_000113629.1|4283893_4284241_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
WP_000800010.1|4284251_4285001_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000062941.1|4285003_4285987_-	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_001574095.1|4286071_4286446_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000370145.1|4286411_4286651_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
WP_001038966.1|4286770_4287181_+	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_014344008.1|4287230_4287491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000917564.1|4287483_4287642_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
WP_001668146.1|4287663_4287963_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
WP_000017133.1|4288089_4290975_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	97.3	0.0e+00
WP_001539618.1|4290937_4292095_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_001237031.1|4292137_4292377_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_000065276.1|4292417_4292666_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262306.1|4292710_4294003_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
WP_000191399.1|4294197_4295400_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000893207.1|4295477_4296914_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000544849.1|4297158_4298373_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000762342.1|4298689_4299151_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000117870.1|4299351_4300752_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
>prophage 11
NZ_CP022070	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 chromosome, complete genome	4884508	4364918	4373650	4884508	transposase,protease	Enterobacteria_phage(14.29%)	7	NA	NA
WP_085983316.1|4364918_4366173_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
WP_000502119.1|4366636_4367095_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_000934063.1|4367286_4369563_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000520789.1|4369593_4369914_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|4370237_4370459_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125877.1|4370588_4372535_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_001201751.1|4372531_4373650_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 1
NZ_CP022071	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 plasmid unnamed1, complete sequence	93862	25514	34810	93862	transposase	Escherichia_phage(28.57%)	11	NA	NA
WP_000088645.1|25514_26195_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.6e-28
WP_000369839.1|26576_26933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000490265.1|26925_27396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000925627.1|27906_28329_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
WP_000457541.1|28328_29603_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	3.0e-156
WP_000064272.1|29684_30659_-	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	3.9e-84
WP_000427676.1|30658_31864_-	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000728917.1|32278_33220_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
WP_001541562.1|33251_33818_-	DUF2913 family protein	NA	NA	NA	NA	NA
WP_001527010.1|33874_34210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001541564.1|34393_34810_-	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
>prophage 1
NZ_CP022072	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 plasmid unnamed2, complete sequence	42327	0	15072	42327	transposase	Escherichia_phage(33.33%)	13	NA	NA
WP_000844627.1|1684_1927_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000164043.1|1958_2609_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA	NA
WP_000804064.1|2714_3914_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
WP_000058717.1|3945_4830_-	EamA family transporter	NA	NA	NA	NA	NA
WP_001214976.1|4967_5375_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_000190049.1|8564_9074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000438384.1|9157_9508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001334906.1|9658_9988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001556714.1|11031_11805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000238252.1|11949_12399_+	hypothetical protein	NA	A0A222YWI5	Escherichia_phage	67.1	5.0e-42
WP_000565612.1|13146_13230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000203396.1|13384_14029_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	28.3	3.4e-07
WP_000516402.1|14409_15072_+	peptidyl-arginine deiminase	NA	E5FFJ3	Burkholderia_phage	25.2	2.6e-07
>prophage 2
NZ_CP022072	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 plasmid unnamed2, complete sequence	42327	19825	20576	42327		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_000220560.1|19825_20107_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	62.4	3.8e-24
WP_001181903.1|20252_20576_+	hypothetical protein	NA	A0A0K1LL53	Rhodobacter_phage	46.1	9.2e-14
>prophage 3
NZ_CP022072	Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_321 plasmid unnamed2, complete sequence	42327	29254	40984	42327	integrase,transposase	Escherichia_phage(37.5%)	12	30029:30041	41317:41329
WP_001067855.1|29254_29959_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
30029:30041	attL	CCTGCAACTGGCC	NA	NA	NA	NA
WP_000240536.1|30714_31566_+	replication protein	NA	NA	NA	NA	NA
WP_001043260.1|31873_32689_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
WP_001082319.1|32749_33553_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
WP_000480972.1|33552_34389_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001067855.1|34449_35154_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000027057.1|35738_36599_+	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
WP_001067855.1|37196_37901_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001317507.1|38052_38526_-	trimethoprim-resistant dihydrofolate reductase DfrA5	NA	G3MBI7	Bacillus_virus	27.7	1.0e-13
WP_000845048.1|38681_39695_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_000454193.1|39897_40248_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_001161490.1|40423_40984_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	100.0	1.1e-59
41317:41329	attR	CCTGCAACTGGCC	NA	NA	NA	NA
