assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002209265.1_ASM220926v2	NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	1	1843244-1843341	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL	Orphan	TTGCATAAGAATCACTAAGGAAATT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,Cas14u_CAS-V	NA,NA|69aa|down_5|NZ_CP022093.1_1849759_1849966_+	NA|107aa|up_9|NZ_CP022093.1_1833614_1833935_+	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|109aa|up_8|NZ_CP022093.1_1833945_1834272_+	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|265aa|up_7|NZ_CP022093.1_1834505_1835300_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|up_6|NZ_CP022093.1_1835283_1836003_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_5|NZ_CP022093.1_1835999_1836731_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|306aa|up_4|NZ_CP022093.1_1837684_1838602_-	PRK12921, PRK12921, oxidoreductase	NA|252aa|up_3|NZ_CP022093.1_1838815_1839571_+	pfam02517, Abi, CAAX protease self-immunity	NA|273aa|up_2|NZ_CP022093.1_1839912_1840731_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|311aa|up_1|NZ_CP022093.1_1840774_1841707_+	cd05290, LDH_3, A subgroup of L-lactate dehydrogenases	NA|357aa|up_0|NZ_CP022093.1_1841872_1842943_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|430aa|down_0|NZ_CP022093.1_1843348_1844638_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|302aa|down_1|NZ_CP022093.1_1844855_1845761_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|382aa|down_2|NZ_CP022093.1_1845757_1846903_+	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|185aa|down_3|NZ_CP022093.1_1848383_1848938_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|157aa|down_4|NZ_CP022093.1_1849111_1849582_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|69aa|down_5|NZ_CP022093.1_1849759_1849966_+	NA	NA|281aa|down_6|NZ_CP022093.1_1850052_1850895_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|205aa|down_7|NZ_CP022093.1_1850895_1851510_-	cd05540, UreG, urease accessory protein UreG	NA|230aa|down_8|NZ_CP022093.1_1851523_1852213_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|151aa|down_9|NZ_CP022093.1_1852205_1852658_-	PRK13261, ureE, urease accessory protein UreE; Provisional
GCF_002209265.1_ASM220926v2	NZ_CP022091	Staphylococcus saprophyticus strain FDAARGOS_355 plasmid unnamed1, complete sequence	1	6484-6632	1	CRISPRCasFinder	no	Cas14u_CAS-V,csa3	Cas14u_CAS-V,csa3	Type I-A	GAGATTATGTATAAGTTGAAAGAAACAAAGTTTTGCAGTAACATGTTACATGT	53	1	2	6537-6579|6537-6579	NZ_CP022091.1_6060-6102|NZ_CP022091.1_6346-6388	NA	1	1	TypeI-A	cas3,DinG,DEDDh,csa3,WYL,Cas14u_CAS-V	NA|93aa|up_2|NZ_CP022091.1_3565_3844_-,NA|45aa|down_2|NZ_CP022091.1_7833_7968_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|333aa|up_6|NZ_CP022091.1_142_1141_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|83aa|up_5|NZ_CP022091.1_1448_1697_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|90aa|up_4|NZ_CP022091.1_1697_1967_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|225aa|up_3|NZ_CP022091.1_2189_2864_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|93aa|up_2|NZ_CP022091.1_3565_3844_-	NA	Cas14u_CAS-V|226aa|up_1|NZ_CP022091.1_3861_4539_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|422aa|up_0|NZ_CP022091.1_4504_5770_-	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|265aa|down_0|NZ_CP022091.1_6697_7492_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|67aa|down_1|NZ_CP022091.1_7497_7698_+	COG3905, COG3905, Predicted transcriptional regulator [Transcription]	NA|45aa|down_2|NZ_CP022091.1_7833_7968_-	NA	NA|295aa|down_3|NZ_CP022091.1_7981_8866_-	COG0701, COG0701, Predicted permeases [General function prediction only]	csa3|107aa|down_4|NZ_CP022091.1_8956_9277_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|65aa|down_5|NZ_CP022091.1_9326_9521_-	PRK00955, PRK00955, YgiQ family radical SAM protein	NA|116aa|down_6|NZ_CP022091.1_9805_10153_+	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD	NA|577aa|down_7|NZ_CP022091.1_10133_11864_+	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase	NA|555aa|down_8|NZ_CP022091.1_11860_13525_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	csa3|105aa|down_9|NZ_CP022091.1_13521_13836_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors
