assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002210025.1_ASM221002v1	NZ_CP019649	Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm6 chromosome, complete genome	1	3066973-3068936	1,1,1,2,2	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29,29	2	2	3068891-3068922|3068876-3068907	NZ_CP019649.1_2244814-2244783|NZ_CP019649.1_2244814-2244783	I-E:I-E:I-E:I-E:I-E	30,31,31,31,30	31	TypeI-E	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP019649.1_3058839_3059601_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP019649.1_3059581_3060631_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP019649.1_3060627_3061107_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP019649.1_3061106_3061817_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP019649.1_3061835_3062147_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP019649.1_3062337_3062694_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP019649.1_3062711_3063317_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP019649.1_3063303_3064743_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP019649.1_3064752_3065661_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP019649.1_3065911_3066958_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP019649.1_3069032_3069326_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP019649.1_3069325_3070246_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP019649.1_3070242_3070893_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP019649.1_3070874_3071621_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP019649.1_3071631_3072690_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP019649.1_3072703_3073264_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|318aa|down_6|NZ_CP019649.1_3077935_3078889_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_7|NZ_CP019649.1_3078976_3079711_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_8|NZ_CP019649.1_3079786_3081499_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_9|NZ_CP019649.1_3081498_3083298_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_002210025.1_ASM221002v1	NZ_CP019649	Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm6 chromosome, complete genome	2	3085067-3086377	3,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,20	21	TypeI-E	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA,NA	cas6e|217aa|up_9|NZ_CP019649.1_3070242_3070893_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|up_8|NZ_CP019649.1_3070874_3071621_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|up_7|NZ_CP019649.1_3071631_3072690_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_6|NZ_CP019649.1_3072703_3073264_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|318aa|up_5|NZ_CP019649.1_3077935_3078889_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP019649.1_3078976_3079711_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP019649.1_3079786_3081499_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP019649.1_3081498_3083298_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP019649.1_3083721_3084084_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP019649.1_3084171_3084969_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP019649.1_3086673_3087345_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP019649.1_3087480_3088779_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP019649.1_3088861_3090499_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP019649.1_3090726_3091527_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP019649.1_3092294_3092591_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP019649.1_3092556_3092913_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP019649.1_3092996_3095231_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP019649.1_3095282_3096578_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP019649.1_3096635_3099392_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP019649.1_3099435_3100578_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
GCF_002210025.1_ASM221002v1	NZ_CP019647	Salmonella enterica subsp. enterica serovar Typhimurium strain TW-Stm6 plasmid pSTM6-275, complete sequence	1	239538-239657	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA|86aa|up_9|NZ_CP019647.1_231460_231718_-,NA|143aa|up_8|NZ_CP019647.1_231782_232211_-,NA|126aa|up_7|NZ_CP019647.1_232305_232683_-,NA|157aa|up_4|NZ_CP019647.1_234626_235097_-,NA|56aa|up_2|NZ_CP019647.1_237994_238162_-,NA|61aa|up_1|NZ_CP019647.1_238482_238665_+,NA|63aa|down_3|NZ_CP019647.1_242747_242936_-	NA|86aa|up_9|NZ_CP019647.1_231460_231718_-	NA	NA|143aa|up_8|NZ_CP019647.1_231782_232211_-	NA	NA|126aa|up_7|NZ_CP019647.1_232305_232683_-	NA	NA|394aa|up_6|NZ_CP019647.1_233090_234272_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|99aa|up_5|NZ_CP019647.1_234280_234577_-	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|157aa|up_4|NZ_CP019647.1_234626_235097_-	NA	NA|806aa|up_3|NZ_CP019647.1_235531_237949_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|56aa|up_2|NZ_CP019647.1_237994_238162_-	NA	NA|61aa|up_1|NZ_CP019647.1_238482_238665_+	NA	NA|235aa|up_0|NZ_CP019647.1_238698_239403_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|84aa|down_0|NZ_CP019647.1_240519_240771_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP019647.1_240760_241042_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|400aa|down_2|NZ_CP019647.1_241538_242738_-	pfam04986, Y2_Tnp, Putative transposase	NA|63aa|down_3|NZ_CP019647.1_242747_242936_-	NA	NA|265aa|down_4|NZ_CP019647.1_244514_245309_+	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|235aa|down_5|NZ_CP019647.1_245615_246320_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|129aa|down_6|NZ_CP019647.1_246513_246900_+	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|131aa|down_7|NZ_CP019647.1_247995_248388_-	COG5015, COG5015, Uncharacterized conserved protein [Function unknown]	NA|178aa|down_8|NZ_CP019647.1_249670_250204_-	cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins	NA|332aa|down_9|NZ_CP019647.1_250203_251199_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11
