assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002214425.1_ASM221442v1	NZ_CP008813	Streptococcus agalactiae strain C001 chromosome, complete genome	1	936737-937959	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DinG,RT,cas9,cas1,cas2,csn2,csm6,DEDDh	Type II-B,Type II-A,Type II-C	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	17,18,11	18	TypeII-B,TypeII-A,TypeII-C	cas3,DinG,RT,cas9,cas1,cas2,csn2,csm6,DEDDh	NA,NA	NA|124aa|up_9|NZ_CP008813.1_926225_926597_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|127aa|up_8|NZ_CP008813.1_926621_927002_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|377aa|up_7|NZ_CP008813.1_927094_928225_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|246aa|up_6|NZ_CP008813.1_928228_928966_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|257aa|up_5|NZ_CP008813.1_928966_929737_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|219aa|up_4|NZ_CP008813.1_929726_930383_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1371aa|up_3|NZ_CP008813.1_930662_934775_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|290aa|up_2|NZ_CP008813.1_934776_935646_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|114aa|up_1|NZ_CP008813.1_935642_935984_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP008813.1_935970_936636_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|139aa|down_0|NZ_CP008813.1_938499_938916_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_1|NZ_CP008813.1_939051_940884_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|878aa|down_2|NZ_CP008813.1_941129_943763_+	NF033189, internalin_A, class 1 internalin InlA	NA|220aa|down_3|NZ_CP008813.1_943862_944522_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_4|NZ_CP008813.1_944530_944995_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|145aa|down_5|NZ_CP008813.1_944994_945429_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|931aa|down_6|NZ_CP008813.1_945581_948374_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|368aa|down_7|NZ_CP008813.1_948373_949477_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|213aa|down_8|NZ_CP008813.1_949595_950234_-	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|363aa|down_9|NZ_CP008813.1_950538_951627_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
GCF_002214425.1_ASM221442v1	NZ_CP008813	Streptococcus agalactiae strain C001 chromosome, complete genome	2	1515624-1516757	2	CRT	no		cas3,DinG,RT,cas9,cas1,cas2,csn2,csm6,DEDDh	Orphan	NGCGCTNGTNCTNGCTGA	18	0	0	NA	NA	NA	16	16	Orphan	cas3,DinG,RT,cas9,cas1,cas2,csn2,csm6,DEDDh	NA,NA|117aa|down_5|NZ_CP008813.1_1526900_1527251_+,NA|53aa|down_6|NZ_CP008813.1_1527343_1527502_-	NA|331aa|up_9|NZ_CP008813.1_1502908_1503901_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|520aa|up_8|NZ_CP008813.1_1503897_1505457_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|515aa|up_7|NZ_CP008813.1_1505463_1507008_-	pfam16993, Asp1, Accessory Sec system protein Asp1	NA|410aa|up_6|NZ_CP008813.1_1507007_1508237_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|399aa|up_5|NZ_CP008813.1_1508360_1509557_-	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|292aa|up_4|NZ_CP008813.1_1509617_1510493_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|395aa|up_3|NZ_CP008813.1_1510485_1511670_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|414aa|up_2|NZ_CP008813.1_1511659_1512901_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|402aa|up_1|NZ_CP008813.1_1512897_1514103_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|336aa|up_0|NZ_CP008813.1_1514111_1515119_-	PRK09814, PRK09814, sugar transferase	NA|498aa|down_0|NZ_CP008813.1_1519080_1520574_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|664aa|down_1|NZ_CP008813.1_1520671_1522663_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|266aa|down_2|NZ_CP008813.1_1522723_1523521_-	pfam02517, Abi, CAAX protease self-immunity	NA|728aa|down_3|NZ_CP008813.1_1523827_1526011_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|down_4|NZ_CP008813.1_1526010_1526751_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|117aa|down_5|NZ_CP008813.1_1526900_1527251_+	NA	NA|53aa|down_6|NZ_CP008813.1_1527343_1527502_-	NA	NA|438aa|down_7|NZ_CP008813.1_1527527_1528841_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|down_8|NZ_CP008813.1_1528901_1529030_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|414aa|down_9|NZ_CP008813.1_1529207_1530449_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_002214425.1_ASM221442v1	NZ_CP008813	Streptococcus agalactiae strain C001 chromosome, complete genome	3	2012106-2012627	3	CRT	no		cas3,DinG,RT,cas9,cas1,cas2,csn2,csm6,DEDDh	Orphan	CTGGNTTNNCNTCTGGTT	18	6	8	2012124-2012141|2012256-2012273|2012256-2012273|2012292-2012309|2012292-2012309|2012376-2012393|2012496-2012513|2012592-2012609	NZ_CP008813.1_2012919-2012936|NZ_CP008813.1_2012943-2012960|NZ_CP008813.1_2012931-2012948|NZ_CP008813.1_2012943-2012960|NZ_CP008813.1_2012931-2012948|NZ_CP008813.1_1695088-1695105|NZ_CP008813.1_2013258-2013275|NZ_CP008813.1_2012943-2012960	NA	12	12	Orphan	cas3,DinG,RT,cas9,cas1,cas2,csn2,csm6,DEDDh	NA|203aa|up_4|NZ_CP008813.1_2005326_2005935_+,NA	NA|746aa|up_9|NZ_CP008813.1_1994292_1996530_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|108aa|up_8|NZ_CP008813.1_1996899_1997223_-	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|1571aa|up_7|NZ_CP008813.1_1998217_2002930_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|229aa|up_6|NZ_CP008813.1_2003162_2003849_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|up_5|NZ_CP008813.1_2003845_2005234_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_4|NZ_CP008813.1_2005326_2005935_+	NA	NA|834aa|up_3|NZ_CP008813.1_2006024_2008526_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|416aa|up_2|NZ_CP008813.1_2008902_2010150_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|282aa|up_1|NZ_CP008813.1_2010192_2011038_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|180aa|up_0|NZ_CP008813.1_2011175_2011715_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|58aa|down_0|NZ_CP008813.1_2015082_2015256_-	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]	NA|51aa|down_1|NZ_CP008813.1_2015291_2015444_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|774aa|down_2|NZ_CP008813.1_2015492_2017814_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|295aa|down_3|NZ_CP008813.1_2017857_2018742_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|547aa|down_4|NZ_CP008813.1_2018766_2020407_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|404aa|down_5|NZ_CP008813.1_2020576_2021788_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|224aa|down_6|NZ_CP008813.1_2021854_2022526_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|401aa|down_7|NZ_CP008813.1_2022555_2023758_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_8|NZ_CP008813.1_2023778_2024558_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|246aa|down_9|NZ_CP008813.1_2024716_2025454_+	COG2188, PhnF, Transcriptional regulators [Transcription]
