The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016316	Bacillus cereus strain M3, complete sequence	5218997	320651	329024	5218997		Synechococcus_phage(50.0%)	8	NA	NA
WP_000625677.1|320651_321959_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.5	4.9e-21
WP_001170542.1|322047_322767_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	44.3	5.2e-49
WP_000278826.1|322759_323014_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_061183753.1|323010_323694_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_073531305.1|323677_325897_+	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	41.0	4.8e-162
WP_073531304.1|325881_327297_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	4.3e-55
WP_001262449.1|327399_328440_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	45.9	1.6e-67
WP_000088580.1|328436_329024_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.1	4.5e-27
>prophage 2
NZ_CP016316	Bacillus cereus strain M3, complete sequence	5218997	1894249	1903595	5218997		Bacillus_phage(71.43%)	9	NA	NA
WP_016717230.1|1894249_1895548_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	30.5	1.0e-10
WP_001194311.1|1895645_1896410_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_073530003.1|1896649_1898410_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	96.1	2.0e-267
WP_142238278.1|1898498_1899176_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	94.2	4.5e-119
WP_016717233.1|1899172_1900246_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	90.2	6.3e-176
WP_142238279.1|1900226_1900853_-	DUF3139 domain-containing protein	NA	NA	NA	NA	NA
WP_000818985.1|1901049_1901769_+	3-ketoacyl-ACP reductase	NA	W8CYX9	Bacillus_phage	100.0	5.9e-61
WP_029141106.1|1901917_1902589_+	O-methyltransferase	NA	W8CYT3	Bacillus_phage	88.3	5.0e-62
WP_016717235.1|1902722_1903595_+	aminoglycoside 6-adenylyltransferase	NA	A0A1X9I6F2	Streptococcus_phage	44.0	1.8e-64
>prophage 3
NZ_CP016316	Bacillus cereus strain M3, complete sequence	5218997	4286704	4294390	5218997		Staphylococcus_phage(16.67%)	9	NA	NA
WP_016718626.1|4286704_4287628_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.5	1.5e-45
WP_014893492.1|4287754_4288690_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.2	4.1e-22
WP_000018053.1|4288691_4289384_-	response regulator transcription factor	NA	B5LWA6	Feldmannia_species_virus	28.8	1.4e-06
WP_001014318.1|4289727_4289922_+	YwbE family protein	NA	NA	NA	NA	NA
WP_001255958.1|4289961_4291161_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	41.2	6.1e-71
WP_000587815.1|4291459_4291783_+	heme oxygenase	NA	NA	NA	NA	NA
WP_001086113.1|4291849_4292614_-	class B sortase	NA	NA	NA	NA	NA
WP_088883330.1|4292646_4293417_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.7	6.4e-13
WP_001036817.1|4293406_4294390_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.5	1.1e-17
>prophage 1
NZ_CP016317	Bacillus cereus strain M3 plasmid pBCM301, complete sequence	229356	99153	217533	229356	transposase,protease,integrase	Bacillus_phage(24.0%)	104	103364:103379	223814:223830
WP_073536292.1|99153_99633_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000520284.1|100763_102473_+	hypothetical protein	NA	NA	NA	NA	NA
103364:103379	attL	AGGTTTGTCCTTTTTT	NA	NA	NA	NA
WP_088883365.1|103689_104655_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1P793	Bacillus_phage	32.3	9.4e-38
103364:103379	attL	AGGTTTGTCCTTTTTT	NA	NA	NA	NA
WP_033696043.1|104733_105045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000136244.1|105141_105462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088883380.1|105737_107510_-	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA	NA
WP_088883366.1|107634_108048_-	HEPN domain-containing protein	NA	NA	NA	NA	NA
WP_000282368.1|108034_108421_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001267125.1|108442_108814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000029264.1|108833_109682_-	thiazole biosynthesis protein ThiF	NA	E3T5K6	Cafeteria_roenbergensis_virus	33.1	4.0e-08
WP_000209415.1|109684_110095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088883367.1|110145_111111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076855997.1|111463_112108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076855996.1|112085_112907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061536281.1|112923_113736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088883368.1|113732_114290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000062335.1|114273_114603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000673198.1|114615_115728_-	DNA polymerase III subunit beta	NA	NA	NA	NA	NA
WP_002073837.1|115808_116201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000251816.1|116413_118315_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	28.7	9.6e-26
WP_046199364.1|119073_119430_-	hypothetical protein	NA	Q0ILF6	Lactococcus_phage	43.9	1.5e-20
WP_001055068.1|119452_119848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046199365.1|120179_120431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046199366.1|120498_120783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046199367.1|121043_121268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046199368.1|121285_121558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012477839.1|121997_122261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001259098.1|122508_123435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000796697.1|123444_124428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001125083.1|125042_125993_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_088883369.1|126212_129713_-	TraM recognition domain-containing protein	NA	NA	NA	NA	NA
WP_000365750.1|129730_130117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000837871.1|130308_131595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000918313.1|132031_133339_-	plasmid replication protein RepX	NA	NA	NA	NA	NA
WP_000098927.1|133365_133701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000564666.1|134287_134893_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000160678.1|135210_136323_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQB7	Streptococcus_phage	45.0	3.3e-79
WP_000557422.1|137349_138486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001002940.1|139195_140149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000239320.1|140168_141668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001168864.1|141684_142134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001181745.1|142159_142555_+	DUF4320 family protein	NA	NA	NA	NA	NA
WP_088883370.1|142809_144279_+	cell surface protein	NA	NA	NA	NA	NA
WP_088883371.1|144396_146748_+	hypothetical protein	NA	NA	NA	NA	NA
144361:144376	attR	AGGTTTGTCCTTTTTT	NA	NA	NA	NA
WP_085963576.1|147294_148655_-|transposase	IS3-like element ISBce15 family transposase	transposase	A0A1B1P773	Bacillus_phage	60.4	2.5e-89
144361:144376	attR	AGGTTTGTCCTTTTTT	NA	NA	NA	NA
WP_088883372.1|148729_149971_+	glutathionylspermidine synthase	NA	B2ZXR7	Ralstonia_phage	25.8	1.1e-22
WP_001032086.1|150101_150356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000425108.1|150548_150941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000675654.1|150990_151698_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_088883373.1|151742_152258_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_088883374.1|152522_155486_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	41.0	2.5e-214
WP_088883375.1|155795_156923_-	collagen-like protein	NA	Q2Q460	Bacillus_phage	73.0	9.9e-55
WP_000583540.1|157271_157835_+	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	40.1	3.6e-29
WP_000045534.1|157972_158941_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1L4BKH1	Thermus_phage	25.6	2.0e-19
WP_000216166.1|159423_159630_+	DUF1657 domain-containing protein	NA	NA	NA	NA	NA
WP_001170598.1|159723_160209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095403.1|160238_160715_+	stage V sporulation protein AC	NA	NA	NA	NA	NA
WP_000938965.1|160715_161732_+	stage V sporulation protein AD	NA	NA	NA	NA	NA
WP_000575919.1|161728_162079_+	stage V sporulation protein AE	NA	NA	NA	NA	NA
WP_000215902.1|162088_162295_+	DUF1657 domain-containing protein	NA	NA	NA	NA	NA
WP_012552713.1|162315_163185_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_001049162.1|163427_164009_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.5	1.3e-55
WP_000576160.1|164031_164583_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	48.6	4.9e-39
WP_000702268.1|164958_166089_-	Ger(x)C family spore germination protein	NA	NA	NA	NA	NA
WP_088883376.1|166093_167188_-	GerAB/ArcD/ProY family transporter	NA	NA	NA	NA	NA
WP_002019995.1|167196_168732_-	spore germination protein	NA	NA	NA	NA	NA
WP_000234699.1|173866_174223_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000842153.1|174345_175461_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.0	1.2e-31
WP_000053341.1|175465_176299_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000264853.1|176465_176738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000425291.1|176812_179080_+	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA	NA	NA	NA	NA
WP_000508314.1|180912_181416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001186887.1|182070_183216_-	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_001045585.1|183255_183738_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002081503.1|184757_185315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001043933.1|186201_186474_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	67.8	1.4e-23
WP_000973308.1|186722_187844_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	S6AND0	Bacillus_phage	79.9	2.1e-169
WP_000894490.1|188480_188921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000021283.1|188945_189179_+	hypothetical protein	NA	A0A217ERD4	Bacillus_phage	55.4	1.2e-07
WP_033679280.1|189205_189397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000843054.1|189422_189701_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	A0A2I7SC16	Paenibacillus_phage	60.7	7.9e-14
WP_000588952.1|190096_190348_-	YolD-like family protein	NA	NA	NA	NA	NA
WP_001265876.1|190610_191729_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	31.9	7.9e-12
WP_000823956.1|191740_193846_+|integrase	tyrosine-type recombinase/integrase	integrase	L7TK95	Rhizobium_phage	26.0	3.5e-05
WP_000179341.1|193838_194219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000795224.1|194536_195412_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_000275816.1|195540_196152_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_000789405.1|196257_197640_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	23.6	7.4e-20
WP_016099827.1|197732_198377_-	YitT family protein	NA	NA	NA	NA	NA
WP_000658979.1|198491_198944_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000154467.1|198969_199488_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001174224.1|199665_200304_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_080120890.1|200940_201858_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_001166855.1|201875_202196_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_000423355.1|202434_203382_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000334699.1|203677_205576_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A1V0SGM7	Hokovirus	25.2	6.2e-41
WP_000762856.1|207065_207632_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000819001.1|207654_209247_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	51.0	6.8e-126
WP_000428096.1|209236_210469_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	25.7	1.4e-25
WP_000590816.1|210491_213650_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	22.6	2.2e-19
WP_157674596.1|213877_214045_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001091679.1|214152_214641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001043707.1|214676_216302_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000936733.1|216273_217533_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
223814:223830	attR	AATTTTCTTTTTATTAT	NA	NA	NA	NA
