The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	426539	467468	2497508	tRNA	Staphylococcus_phage(96.3%)	32	NA	NA
WP_002446739.1|426539_427964_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	64.7	2.2e-176
WP_002495705.1|427953_428955_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.2	1.7e-90
WP_002495706.1|428951_429203_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	80.7	9.6e-35
WP_079994857.1|429261_429738_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	58.7	1.1e-44
WP_002446735.1|429724_430510_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	70.0	5.6e-97
WP_002495707.1|430571_432164_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.6	7.2e-269
WP_002457863.1|432533_433733_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.4	1.3e-193
WP_002457862.1|433835_434744_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	81.0	6.0e-103
WP_002446731.1|434923_435760_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	72.2	2.5e-119
WP_002457861.1|436008_436362_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	2.9e-05
WP_002446729.1|436358_436724_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.9	2.4e-34
WP_002446728.1|436760_437069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070853467.1|437345_438059_+	transaldolase	NA	M4QQQ7	Cyanophage	37.7	7.0e-22
WP_002446726.1|438198_438642_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.5	1.3e-21
WP_002457860.1|438628_439072_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002446724.1|439077_439557_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.3	2.9e-24
WP_002446723.1|439763_439979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830727.1|440357_441209_+	autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_002446722.1|441548_443042_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_002495708.1|443480_444524_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.5	7.6e-134
WP_002457857.1|444530_445163_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	76.7	1.1e-87
WP_088922675.1|445175_446357_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	6.3e-177
WP_002446718.1|446369_446831_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	3.5e-59
WP_002490148.1|446877_447879_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	70.3	1.2e-131
WP_002446716.1|448121_448949_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002457854.1|449439_449841_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_088922676.1|450107_450671_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	65.4	1.5e-67
WP_001830802.1|450667_451621_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
WP_088922677.1|451727_452942_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.5	2.3e-182
WP_002500677.1|453233_455648_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.4	0.0e+00
WP_001830891.1|455673_455985_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	4.1e-35
WP_088922678.1|456389_467468_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	27.9	3.3e-41
>prophage 2
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	579428	588581	2497508	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002499834.1|579428_580433_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	5.8e-06
WP_080035765.1|580395_581460_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002446619.1|581480_582620_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	3.0e-83
WP_002446618.1|582635_582896_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.3	5.7e-06
WP_002490169.1|583243_585535_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	38.2	4.8e-32
WP_002499833.1|585770_588044_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.8	6.6e-66
WP_001832698.1|588062_588581_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	2.1e-28
>prophage 3
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	926252	962637	2497508	portal,terminase,integrase,capsid,head,plate,transposase,holin,tail	Staphylococcus_phage(55.0%)	48	943294:943311	963986:964003
WP_002446335.1|926252_926936_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	28.2	4.7e-07
WP_142293714.1|926939_927011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_104832450.1|927234_928413_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	5.7e-61
WP_002446333.1|929126_929771_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	26.2	4.5e-12
WP_002499642.1|930179_930386_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	66.2	1.8e-18
WP_002499644.1|930895_931351_-	DUF2335 domain-containing protein	NA	A0A0D4DCC1	Staphylococcus_phage	53.7	1.4e-31
WP_002499645.1|931340_931556_-	hypothetical protein	NA	A1BU79	Staphylococcus_virus	70.4	7.9e-22
WP_070853572.1|931664_932582_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JNM6	Staphylococcus_phage	62.9	5.9e-66
WP_002499647.1|932633_934460_-	CHAP domain-containing protein	NA	A0A1J0MFB0	Staphylococcus_phage	52.7	3.6e-187
WP_002499648.1|934474_934870_-|holin	phage holin family protein	holin	A0A249Y1Z6	Staphylococcus_phage	40.8	4.4e-18
WP_002499649.1|934889_936167_-|plate	BppU family phage baseplate upper protein	plate	Q4ZE15	Staphylococcus_virus	51.8	4.2e-118
WP_002499650.1|936181_937183_-	SGNH/GDSL hydrolase family protein	NA	Q4ZE16	Staphylococcus_virus	59.4	1.4e-105
WP_002499651.1|937196_937793_-	hypothetical protein	NA	A0A1J0MFH9	Staphylococcus_phage	50.0	4.7e-56
WP_002499652.1|937776_939192_-	hypothetical protein	NA	Q4ZE19	Staphylococcus_virus	55.2	6.2e-139
WP_002499653.1|939200_940136_-|tail	phage tail family protein	tail	Q4ZE20	Staphylococcus_virus	58.2	9.9e-101
WP_070853570.1|940148_943568_-	hypothetical protein	NA	M9NRJ5	Staphylococcus_phage	38.7	4.1e-96
943294:943311	attL	TTTTCTAATTGACTTACT	NA	NA	NA	NA
WP_088922715.1|943580_943934_-	hypothetical protein	NA	Q4ZE25	Staphylococcus_virus	67.5	1.9e-36
WP_002499656.1|943984_944329_-	hypothetical protein	NA	A0A1J0MFH0	Staphylococcus_phage	59.8	2.5e-33
WP_002499657.1|944393_945008_-|tail	phage major tail protein, TP901-1 family	tail	Q4ZDM3	Staphylococcus_virus	54.2	2.7e-46
WP_002499658.1|945019_945415_-	hypothetical protein	NA	H9A0N7	Staphylococcus_phage	40.8	3.3e-21
WP_002499659.1|945424_945775_-	hypothetical protein	NA	H9A0N6	Staphylococcus_phage	59.5	9.3e-36
WP_002499660.1|945777_946080_-	hypothetical protein	NA	A0A1J0MF86	Staphylococcus_phage	48.0	9.5e-21
WP_002499661.1|946079_946406_-|head,tail	phage head-tail connector protein	head,tail	Q4ZE31	Staphylococcus_virus	54.5	2.4e-25
WP_002499662.1|946402_946906_-	Ig-like domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	37.0	9.3e-21
WP_088922716.1|946983_947880_-|capsid	capsid protein	capsid	Q4ZE33	Staphylococcus_virus	59.9	4.1e-96
WP_070593231.1|947891_948473_-	DUF4355 domain-containing protein	NA	A0A1J0MFG0	Staphylococcus_phage	36.4	1.7e-05
WP_002499666.1|948633_948828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002499667.1|948837_950190_-	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	58.8	4.0e-143
WP_002499668.1|950179_951628_-|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	68.1	3.7e-195
WP_002499669.1|951642_952917_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	73.1	6.3e-191
WP_002499670.1|952903_953332_-	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	50.4	2.4e-25
WP_157727271.1|953503_953662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002499672.1|953850_954345_-	hypothetical protein	NA	A0A0K2CNQ1	Brevibacillus_phage	29.5	1.3e-11
WP_002499674.1|954675_955212_-	hypothetical protein	NA	A0A2K9VBU6	Staphylococcus_phage	73.6	6.1e-71
WP_002499675.1|955204_955750_-	hypothetical protein	NA	Q4ZC86	Staphylococcus_virus	43.1	1.8e-17
WP_002499676.1|955746_955926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002499677.1|956200_956485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070853568.1|956488_957445_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.3	3.4e-48
WP_002499679.1|957472_957988_-	hypothetical protein	NA	A9CR64	Staphylococcus_phage	66.9	1.0e-59
WP_002499680.1|958014_958782_-	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	81.5	1.5e-115
WP_002499681.1|958782_959322_-	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	70.8	3.9e-65
WP_002494406.1|959326_959593_-	hypothetical protein	NA	A0A2H4JAK6	uncultured_Caudovirales_phage	57.5	2.3e-18
WP_002493719.1|959648_959843_-	DUF1270 family protein	NA	NA	NA	NA	NA
WP_002493721.1|959859_960138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070593209.1|960164_960383_-	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	63.9	2.2e-19
WP_002499683.1|960548_960926_+	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	54.4	3.1e-29
WP_002499684.1|961098_961470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002499685.1|961512_962637_+|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	29.1	3.3e-34
963986:964003	attR	TTTTCTAATTGACTTACT	NA	NA	NA	NA
>prophage 4
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	1202953	1211423	2497508		Synechococcus_phage(33.33%)	9	NA	NA
WP_002446154.1|1202953_1203520_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.9	3.0e-28
WP_002446153.1|1203519_1204551_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	9.6e-65
WP_002446152.1|1204543_1206028_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.2e-44
WP_002446151.1|1206006_1208196_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.3	1.6e-138
WP_002475236.1|1208188_1208860_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002446149.1|1208861_1209122_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_088922740.1|1209121_1209826_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	3.6e-47
WP_002446147.1|1209826_1210954_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002446146.1|1210940_1211423_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.0	7.5e-20
>prophage 5
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	1416104	1431720	2497508	terminase,integrase	Staphylococcus_phage(46.15%)	19	1408764:1408778	1432623:1432637
1408764:1408778	attL	TAAATCATATGTTAA	NA	NA	NA	NA
WP_080392076.1|1416104_1416359_-	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	69.2	3.3e-27
WP_088922757.1|1416535_1417576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060554433.1|1417568_1418279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060554431.1|1418280_1418754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060554429.1|1418902_1419388_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	65.0	4.2e-55
WP_088922758.1|1420153_1420687_-	hypothetical protein	NA	A0A2H4JD56	uncultured_Caudovirales_phage	31.9	2.2e-12
WP_060554423.1|1420699_1421038_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	72.5	9.6e-38
WP_060554421.1|1421376_1422018_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	76.1	6.4e-91
WP_060554420.1|1422018_1422375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060554419.1|1422367_1422721_-	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	67.3	7.9e-43
WP_060554418.1|1422969_1424340_-	DNA primase	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	93.6	2.8e-253
WP_060554417.1|1424351_1425221_-	mobile element-associated protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	82.7	3.6e-145
WP_060554416.1|1425305_1425647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060554415.1|1425651_1425861_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	68.3	1.2e-17
WP_032603302.1|1426036_1426255_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_032603303.1|1426408_1427146_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	28.8	1.1e-06
WP_060554440.1|1427160_1428267_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.6	1.2e-76
WP_001829588.1|1428846_1429317_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	88.5	1.4e-71
WP_002445969.1|1429341_1431720_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.6	1.1e-90
1432623:1432637	attR	TTAACATATGATTTA	NA	NA	NA	NA
>prophage 6
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	1444586	1450834	2497508	transposase	Streptococcus_phage(33.33%)	6	NA	NA
WP_088922760.1|1444586_1445727_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	96.4	3.4e-71
WP_001829659.1|1445835_1446420_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	54.7	3.1e-52
WP_002445957.1|1446747_1447692_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	2.4e-54
WP_002499912.1|1447822_1448818_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	39.8	7.7e-51
WP_002457583.1|1448817_1449726_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	33.6	4.7e-07
WP_002457584.1|1449901_1450834_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	48.2	1.6e-82
>prophage 7
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	1482989	1493425	2497508		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_001829596.1|1482989_1483769_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
WP_088922766.1|1483765_1484725_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	92.0	5.0e-15
WP_038812497.1|1484708_1485683_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	98.5	6.6e-164
WP_002445924.1|1485746_1485968_-	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	85.0	4.6e-09
WP_002445923.1|1485942_1486911_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	99.7	8.7e-185
WP_002495827.1|1487029_1489135_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	99.3	0.0e+00
WP_001829589.1|1489097_1489496_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_002445920.1|1490248_1491124_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002445919.1|1491137_1491638_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_002445918.1|1491919_1493425_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
>prophage 8
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	1830572	1843671	2497508	terminase	Staphylococcus_phage(86.67%)	21	NA	NA
WP_002447711.1|1830572_1830920_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	1.1e-12
WP_002447710.1|1830938_1831556_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_002447709.1|1831696_1831885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100214632.1|1832017_1832332_-|terminase	terminase	terminase	Q4ZE85	Staphylococcus_phage	58.7	6.8e-30
WP_088922785.1|1832880_1833411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088922787.1|1833680_1834235_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	63.6	1.8e-57
WP_002485647.1|1834239_1834581_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	33.9	4.1e-12
WP_088922788.1|1834583_1835042_-	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	58.3	2.5e-33
WP_088922789.1|1835103_1835814_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	32.7	1.1e-32
WP_088922881.1|1835839_1836181_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	69.0	6.7e-39
WP_088922790.1|1836527_1837169_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	74.2	1.7e-88
WP_002476181.1|1837168_1837453_-	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	75.6	2.4e-34
WP_088922791.1|1837454_1837817_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	80.0	5.1e-53
WP_088922792.1|1838093_1839575_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	85.1	3.7e-251
WP_032605633.1|1839587_1840460_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	50.7	3.3e-74
WP_002497054.1|1840553_1840844_-	DUF1474 family protein	NA	A0A1W6JPG5	Staphylococcus_phage	84.9	7.7e-36
WP_002497056.1|1840960_1841377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088922793.1|1841531_1841804_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	81.1	9.4e-36
WP_088922794.1|1841843_1842047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075778678.1|1842182_1842980_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002501464.1|1843269_1843671_+	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	47.9	8.1e-28
>prophage 9
NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2497508	2413662	2433599	2497508	protease,transposase,holin	Bacillus_phage(20.0%)	17	NA	NA
WP_079994910.1|2413662_2414481_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_079994911.1|2415012_2415279_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002447155.1|2415565_2416237_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	35.4	5.8e-18
WP_002458165.1|2416229_2417006_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_088922864.1|2417144_2418323_+	MFS transporter	NA	NA	NA	NA	NA
WP_088922865.1|2418405_2419773_-	carboxylesterase/lipase family protein	NA	NA	NA	NA	NA
WP_002490662.1|2420076_2421756_-	APC family permease	NA	NA	NA	NA	NA
WP_002487914.1|2422845_2423616_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_109043806.1|2423901_2425080_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	4.3e-61
WP_157727273.1|2425461_2427138_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	78.1	7.9e-242
WP_088922866.1|2427161_2428214_-	2,3-butanediol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	21.4	2.6e-09
WP_002447162.1|2428703_2429960_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	53.8	2.7e-21
WP_001831629.1|2429962_2430598_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_088922890.1|2430665_2431559_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002447165.1|2431558_2432254_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001831408.1|2432435_2433137_-|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_002438251.1|2433140_2433599_-|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
>prophage 1
NZ_CP022250	Staphylococcus epidermidis strain ATCC 12228 plasmid pAMT2, complete sequence	23530	0	18849	23530	transposase	uncultured_virus(25.0%)	17	NA	NA
WP_002500633.1|872_1586_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001807343.1|1710_1833_-	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_001077893.1|1908_2469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000622776.1|2673_4218_-	quaternary ammonium compound efflux MFS transporter QacA	NA	A0A0M3UL24	Mycobacterium_phage	26.8	4.2e-32
WP_001832666.1|4395_4962_+	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA	NA
WP_000583537.1|5166_5775_-	recombinase family protein	NA	I1ZBD6	Salisaeta_icosahedral_phage	30.6	8.3e-16
WP_001829991.1|5905_6484_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	50.6	9.3e-41
WP_001284653.1|6747_7128_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096392.1|7117_8875_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733268.1|8981_9827_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.7	1.3e-30
WP_002487914.1|11441_12212_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_012818154.1|12497_14207_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	78.1	8.1e-242
WP_001831389.1|14496_15438_+	cation transporter	NA	A0A1V0SED0	Indivirus	27.0	6.6e-20
WP_001831374.1|15478_15754_-	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_001831396.1|15928_16204_+	metal-sensing transcriptional repressor	NA	NA	NA	NA	NA
WP_088922913.1|16218_18606_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	39.3	9.5e-124
WP_001831373.1|18639_18849_+	copper chaperone CopZ	NA	A0A218MNH0	uncultured_virus	38.2	4.5e-06
