assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002215535.1_ASM221553v1	NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	1	389270-389412	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas9,cas1,cas2	Orphan	AGAACACATTCCTTCCCGGAATGAGATATAGGTGCAAATCCTATCTTCCGCTCCA	55	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas9,cas1,cas2	NA,NA|61aa|down_7|NZ_CP022247.1_397208_397391_+,NA|135aa|down_8|NZ_CP022247.1_397542_397947_+	NA|272aa|up_9|NZ_CP022247.1_370719_371535_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|325aa|up_8|NZ_CP022247.1_371731_372706_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|348aa|up_7|NZ_CP022247.1_372885_373929_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|181aa|up_6|NZ_CP022247.1_374035_374578_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|579aa|up_5|NZ_CP022247.1_374819_376556_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|365aa|up_4|NZ_CP022247.1_376706_377801_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|430aa|up_3|NZ_CP022247.1_378107_379397_-	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|153aa|up_2|NZ_CP022247.1_379477_379936_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|317aa|up_1|NZ_CP022247.1_379938_380889_+	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|151aa|up_0|NZ_CP022247.1_380984_381437_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|283aa|down_0|NZ_CP022247.1_389937_390786_+	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|353aa|down_1|NZ_CP022247.1_391012_392071_+	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|486aa|down_2|NZ_CP022247.1_392310_393768_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|243aa|down_3|NZ_CP022247.1_393754_394483_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|381aa|down_4|NZ_CP022247.1_394818_395961_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|157aa|down_5|NZ_CP022247.1_395957_396428_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|200aa|down_6|NZ_CP022247.1_396585_397185_+	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|61aa|down_7|NZ_CP022247.1_397208_397391_+	NA	NA|135aa|down_8|NZ_CP022247.1_397542_397947_+	NA	NA|462aa|down_9|NZ_CP022247.1_398138_399524_+	PRK00485, fumC, fumarate hydratase; Reviewed
GCF_002215535.1_ASM221553v1	NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	2	1645975-1646063	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas9,cas1,cas2	Orphan	TCCACTCTATACTTTGATCTCTGAT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas9,cas1,cas2	NA,NA	NA|169aa|up_9|NZ_CP022247.1_1634281_1634788_-	pfam08741, YwhD, YwhD family	NA|433aa|up_8|NZ_CP022247.1_1634844_1636143_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|up_7|NZ_CP022247.1_1636234_1636711_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|225aa|up_6|NZ_CP022247.1_1637159_1637834_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|190aa|up_5|NZ_CP022247.1_1638044_1638614_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|315aa|up_4|NZ_CP022247.1_1638963_1639908_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|894aa|up_3|NZ_CP022247.1_1639931_1642613_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|313aa|up_2|NZ_CP022247.1_1643073_1644012_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP022247.1_1644168_1644591_+	pfam02082, Rrf2, Transcriptional regulator	NA|456aa|up_0|NZ_CP022247.1_1644559_1645927_+	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|114aa|down_0|NZ_CP022247.1_1646315_1646657_-	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|359aa|down_1|NZ_CP022247.1_1646867_1647944_-	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|328aa|down_2|NZ_CP022247.1_1647956_1648940_-	TIGR01240, Diphosphomevalonate_decarboxylase, diphosphomevalonate decarboxylase	NA|307aa|down_3|NZ_CP022247.1_1648944_1649865_-	TIGR00549, Mevalonate_kinase, mevalonate kinase	NA|280aa|down_4|NZ_CP022247.1_1650557_1651397_-	cd16443, LplA, lipoate-protein ligase	NA|330aa|down_5|NZ_CP022247.1_1651396_1652386_-	PRK09653, eutD, phosphotransacetylase	NA|250aa|down_6|NZ_CP022247.1_1652556_1653306_+	PRK12276, PRK12276, putative heme peroxidase; Provisional	NA|255aa|down_7|NZ_CP022247.1_1653809_1654574_+	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|151aa|down_8|NZ_CP022247.1_1654586_1655039_+	COG3610, COG3610, Uncharacterized conserved protein [Function unknown]	NA|497aa|down_9|NZ_CP022247.1_1655199_1656690_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
GCF_002215535.1_ASM221553v1	NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	3	1953993-1954160	1	PILER-CR	no	cas9,cas1,cas2	WYL,csa3,DEDDh,cas3,DinG,cas9,cas1,cas2	 or Type II-C?,Type II-C,Type II-B, Type II-B,Type II-A	ATGGTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT	39	0	0	NA	NA	NA	2	2	orTypeII-C?,TypeII-C,TypeII-B,TypeII-B,TypeII-A	WYL,csa3,DEDDh,cas3,DinG,cas9,cas1,cas2	NA|330aa|up_0|NZ_CP022247.1_1952973_1953963_+,NA|67aa|down_0|NZ_CP022247.1_1954856_1955057_+,NA|210aa|down_1|NZ_CP022247.1_1955219_1955849_+,NA|455aa|down_3|NZ_CP022247.1_1956963_1958328_+,NA|109aa|down_4|NZ_CP022247.1_1958327_1958654_+,NA|96aa|down_5|NZ_CP022247.1_1958657_1958945_+	NA|234aa|up_9|NZ_CP022247.1_1940322_1941024_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|611aa|up_8|NZ_CP022247.1_1941036_1942869_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|449aa|up_7|NZ_CP022247.1_1942852_1944199_+	pfam07435, YycH, YycH protein	NA|264aa|up_6|NZ_CP022247.1_1944199_1944991_+	COG4853, COG4853, Uncharacterized protein conserved in bacteria [Function unknown]	NA|267aa|up_5|NZ_CP022247.1_1945614_1946415_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|160aa|up_4|NZ_CP022247.1_1947465_1947945_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	cas9|1054aa|up_3|NZ_CP022247.1_1948568_1951730_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|302aa|up_2|NZ_CP022247.1_1951737_1952643_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|103aa|up_1|NZ_CP022247.1_1952654_1952963_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|330aa|up_0|NZ_CP022247.1_1952973_1953963_+	NA	NA|67aa|down_0|NZ_CP022247.1_1954856_1955057_+	NA	NA|210aa|down_1|NZ_CP022247.1_1955219_1955849_+	NA	NA|260aa|down_2|NZ_CP022247.1_1956181_1956961_+	pfam04507, DUF576, Csa1 family	NA|455aa|down_3|NZ_CP022247.1_1956963_1958328_+	NA	NA|109aa|down_4|NZ_CP022247.1_1958327_1958654_+	NA	NA|96aa|down_5|NZ_CP022247.1_1958657_1958945_+	NA	NA|577aa|down_6|NZ_CP022247.1_1959508_1961239_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|114aa|down_7|NZ_CP022247.1_1961231_1961573_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|260aa|down_8|NZ_CP022247.1_1962440_1963220_+	pfam04507, DUF576, Csa1 family	NA|146aa|down_9|NZ_CP022247.1_1963344_1963782_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)
GCF_002215535.1_ASM221553v1	NZ_CP022247	Staphylococcus epidermidis strain ATCC 12228 chromosome, complete genome	4	2336584-2336667	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas9,cas1,cas2	Orphan	CCCAACAGAGAGAATTTCCGAAGAAAT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas9,cas1,cas2	NA,NA|106aa|down_5|NZ_CP022247.1_2341429_2341747_-,NA|59aa|down_9|NZ_CP022247.1_2344880_2345057_+	NA|173aa|up_9|NZ_CP022247.1_2325513_2326032_+	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|389aa|up_8|NZ_CP022247.1_2326285_2327452_-	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|426aa|up_7|NZ_CP022247.1_2327696_2328974_+	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|145aa|up_6|NZ_CP022247.1_2329050_2329485_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|72aa|up_5|NZ_CP022247.1_2329742_2329958_-	pfam06855, YozE_SAM_like, YozE SAM-like fold	NA|295aa|up_4|NZ_CP022247.1_2330145_2331030_+	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|131aa|up_3|NZ_CP022247.1_2331343_2331736_+	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|230aa|up_2|NZ_CP022247.1_2331732_2332422_+	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|580aa|up_1|NZ_CP022247.1_2332471_2334211_+	PRK08611, PRK08611, pyruvate oxidase; Provisional	NA|676aa|up_0|NZ_CP022247.1_2334453_2336481_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|256aa|down_0|NZ_CP022247.1_2336828_2337596_+	pfam02517, Abi, CAAX protease self-immunity	NA|351aa|down_1|NZ_CP022247.1_2337660_2338713_-	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like	NA|109aa|down_2|NZ_CP022247.1_2338936_2339263_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|288aa|down_3|NZ_CP022247.1_2339431_2340295_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|327aa|down_4|NZ_CP022247.1_2340377_2341358_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|106aa|down_5|NZ_CP022247.1_2341429_2341747_-	NA	NA|386aa|down_6|NZ_CP022247.1_2342197_2343355_+	TIGR04012, poly_gGlu_PgsB, poly-gamma-glutamate synthase PgsB/CapB	NA|151aa|down_7|NZ_CP022247.1_2343356_2343809_+	TIGR04011, poly_gGlu_PgsC, poly-gamma-glutamate biosynthesis protein PgsC/CapC	NA|358aa|down_8|NZ_CP022247.1_2343832_2344906_+	smart00854, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|59aa|down_9|NZ_CP022247.1_2344880_2345057_+	NA
