The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015272	Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome	6175731	272945	342555	6175731	transposase,integrase	Rhodococcus_phage(20.0%)	55	329332:329391	350920:352439
WP_042910414.1|272945_274151_-|integrase	site-specific integrase	integrase	G9FGY1	Rhodococcus_phage	54.6	2.9e-113
WP_042910415.1|274188_274389_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_142383088.1|275301_275673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154074405.1|276099_276246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142383282.1|277230_277998_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_142383090.1|277994_278717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051445816.1|278713_284551_-	relaxase domain-containing protein	NA	NA	NA	NA	NA
WP_051445817.1|284828_285314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142383091.1|285585_285822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042910451.1|286481_286664_-	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_080691128.1|286767_287802_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1P8DJP1	Virus_Rctr41k	26.6	2.3e-05
WP_042910420.1|287948_288509_-	RES domain-containing protein	NA	NA	NA	NA	NA
WP_042910421.1|288505_288847_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_042910422.1|292294_292927_-	CAP domain-containing protein	NA	NA	NA	NA	NA
WP_087139799.1|293288_293747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051445819.1|293944_294622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054585687.1|294625_296080_-	MCE family protein	NA	NA	NA	NA	NA
WP_042910424.1|296081_297221_-	MCE family protein	NA	NA	NA	NA	NA
WP_042910425.1|297217_298549_-	MCE family protein	NA	NA	NA	NA	NA
WP_051445822.1|298545_299805_-	MCE family protein	NA	NA	NA	NA	NA
WP_042910426.1|299801_300830_-	MCE family protein	NA	NA	NA	NA	NA
WP_054585688.1|300887_302231_-	MCE family protein	NA	NA	NA	NA	NA
WP_054585689.1|302235_303093_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_051445820.1|303089_303875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_101930933.1|305459_306182_-	DNA replication protein	NA	U5N3V8	Enterobacteria_phage	43.3	2.4e-46
WP_042910430.1|308173_308746_-	protocatechuate 3,4-dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_042910456.1|309578_310358_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042910432.1|310956_311868_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_042910433.1|312131_313052_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_042910434.1|313112_314246_+	epoxide hydrolase	NA	NA	NA	NA	NA
WP_051445821.1|314910_316254_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_042910435.1|316250_316793_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_042910437.1|316898_317930_+	2,3-butanediol dehydrogenase	NA	NA	NA	NA	NA
WP_087139621.1|317984_319238_+	CoA transferase	NA	NA	NA	NA	NA
WP_042910439.1|319234_320401_+	transporter	NA	NA	NA	NA	NA
WP_042910440.1|320437_320881_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_042910459.1|320873_321929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042910177.1|322140_323550_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_042910179.1|323570_324107_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_042910181.1|324202_324643_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_042910183.1|324733_325621_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_054585743.1|325783_326317_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042910184.1|326452_327196_+	class II aldolase/adducin family protein	NA	NA	NA	NA	NA
WP_101930916.1|328340_329375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
329332:329391	attL	CAGTACAACTGATATGTAGGCATTCTTTGTCAAGAGGCAGGTGAAAGCCGCCCCGGTTGG	NA	NA	NA	NA
WP_080691087.1|329649_330753_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_080691110.1|330827_331031_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_080691111.1|331205_332048_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
WP_042910185.1|333191_334091_+	alpha/beta fold hydrolase	NA	A0A0A7RWQ4	Mycobacterium_phage	37.2	4.5e-10
WP_087139801.1|334102_335410_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_042910186.1|335412_335928_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_042910187.1|335964_337197_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_054585634.1|337245_338190_+	extradiol ring-cleavage dioxygenase	NA	NA	NA	NA	NA
WP_042910189.1|338484_338880_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_042910040.1|339409_340474_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_080691086.1|341883_342555_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	33.1	1.6e-15
350920:352439	attR	CCAACCGGGGCGGCTTTCACCTGCCTCTTGACAAAGAATGCCTACATATCAGTTGTACTGCCCAGGCAGGTTGGTTGAACAGATGTGACGACACGCTGTAGCGGTCGTTGGTGGGTGAAGGTCTCCTGTCGTGGAGTGGAGCTGCTACCACTTCACCGCACGAACAGGAGACCTTCATGGTCCACGCTAATGCCGTATTGACTCCTCGTGGGCGCTTGTTGCTGGCGCGTCGAGTCGTTGACGAGGGCTGGCCGATCGTCCGCGCCGCCGAGCATTTCCACGTGTCTTGGCCAACTGCCAAACGCTGGGCGTCGCGCTATGCGGCGATGGGGGCGGCCGGGATGACCGATCGGTCCAGCCGACCCCACCACTGTCCGAAGCGCACACCACAACCGGTGGTGCGCAAGATCGTGCATTTGCGATGGCACCACCGGCTTTCTCCACTGGCCATTGCGTCTCGGTTATCGATGCCGGCCTCCACGGTGCACGCGGTGTTGGTGCGGTGTCGACTGAATCGGCTGTCGCACATTGACATCCGCACTGGTGAAGTCATCCGCCGCTATGAACATGACCACCCCGGTTCGCTGATCCACGTCGACGTCAAGAAACTGGGCAACATCCCCGACGGTGGGGGCTGGCGCTTCGTGGGGCGCGCTCAAGGTTGGAAGAACCGACGATCCATGCCCACCGCCAAACGCAGCCGGTACCGCAACGAGTTGATGGGCCATTCCTTCGTGCACACCGTGATCGACGACCACTCCCGAGTGGCTTATGCCGAGATCCACGACGACGAAACCGCGGCTACTGCCATCGCGGTGCTGCGCCGCGCTATCGCTTGGTTCGCTGCTCGGGGCGTGGCTGTCAAGCACGTGCTATCAGACAACGGCTCCTGCTACCGCGCCCATGCCTGGCGCGACGCCTGTGCTGAGCTGCACGTCACGCCCAAACGGACCCGCGCTTACCGGCCCCAGACCAACGGCAAGATCGAACGCTTCACCGCACCATGGCCGCCGAATGGGCCTTCGCCCGCCACTACTCCAACGAACGCACCCGCCGCTCCGCCCTACCGGCCTGGCTGCACACCTACAATCACTGTGAGTCTTCACTCCTCGATCGGGAAGGTCCCACCCATCACGCGGTTGACCAACCTGCCTGGGCAGTACAACTAGTCGATTCAGAGCCACGCTCCTAATGAGGCCGGGGGGCGTGAACTTCTGCATCGGGCGCTGGCCCGGCTCGGTAGTGTGCGAAGGTGAGCGCCAAATCCGCTCGCTGACTCTCCTTGAGCAGGTCAATGCTTCGCGTCTGCGATACCTACGCTGACTGCCCGGCGTGAACTAGGCGCAATGCGTACCCGGACCCACGGCCGAACGCGGCTGTCCTCGCGACCGTTGCGCCGCCAATTATCACGACGGAACATGTGGGCGACACTGTACGCGGGCTGTCGTCGGCTGCGACCCCACCAAAGGCACACTCTAGCGCGAATCGGAGTTTGCGTCGCGCCGCGCGGATAGACGTGC	NA	NA	NA	NA
>prophage 2
NZ_CP015272	Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome	6175731	908623	974066	6175731	integrase,transposase	Staphylococcus_phage(37.5%)	45	889019:889038	973862:973881
889019:889038	attL	GCGCGGGTTGCTGGTCGCCG	NA	NA	NA	NA
WP_101930856.1|908623_909256_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_007172184.1|909432_909903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172185.1|909899_912101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172186.1|912097_913822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930855.1|913821_915312_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_007172195.1|919070_919397_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007172196.1|920245_920866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040624304.1|920866_921901_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	31.5	7.0e-31
WP_087139632.1|922151_923299_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	32.4	9.2e-32
WP_033717415.1|924420_925020_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_101930920.1|925448_926060_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172201.1|926135_926582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042910691.1|926696_927593_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_008263955.1|927589_930535_-	RND family transporter	NA	NA	NA	NA	NA
WP_007172204.1|931480_932122_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172205.1|932370_932535_+	DUF5078 domain-containing protein	NA	NA	NA	NA	NA
WP_042909973.1|932574_935508_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_008263966.1|935504_935924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033721600.1|936531_937542_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_042909972.1|939456_940731_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	48.0	4.8e-98
WP_042909917.1|941576_942719_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_042909971.1|942795_943452_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_042909918.1|943448_944906_-	cytochrome P450	NA	NA	NA	NA	NA
WP_007172211.1|946416_946869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172212.1|946883_947396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172213.1|947392_947728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033721564.1|947714_949106_-	DUF1446 domain-containing protein	NA	NA	NA	NA	NA
WP_007172215.1|949102_949276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172216.1|949732_950887_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_033721567.1|950927_952115_+	thiolase family protein	NA	NA	NA	NA	NA
WP_033721568.1|952126_952516_+	Zn-ribbon domain-containing OB-fold protein	NA	NA	NA	NA	NA
WP_157682439.1|952567_953113_+	hypothetical protein	NA	A0A2P1JQX9	Mycobacterium_phage	61.8	1.1e-40
WP_007172220.1|953506_955054_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	29.6	9.4e-48
WP_007172221.1|955116_956316_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_136244867.1|956955_957738_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_046184313.1|957952_958753_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_007172224.1|959140_960694_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.2	1.4e-35
WP_007172225.1|960786_961845_+	BtrH N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_033721541.1|962189_963641_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_085981746.1|964049_964700_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172228.1|964756_966055_+	cytochrome P450	NA	NA	NA	NA	NA
WP_007172229.1|966066_966258_+	ferredoxin	NA	NA	NA	NA	NA
WP_007172230.1|966379_967438_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_046186391.1|970327_972115_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.1	1.8e-82
WP_007172236.1|972827_974066_-|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.6	1.9e-06
973862:973881	attR	CGGCGACCAGCAACCCGCGC	NA	NA	NA	NA
>prophage 3
NZ_CP015272	Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome	6175731	979032	1042257	6175731	integrase,transposase	Burkholderia_virus(20.0%)	45	978016:978048	1039250:1039282
978016:978048	attL	CGACACGGGGTCAGTTTTCAGACGACGCCGACA	NA	NA	NA	NA
WP_087588774.1|979032_980290_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	53.7	1.0e-68
WP_074021014.1|980966_981458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172252.1|981331_982111_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_007172254.1|982463_982913_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_007172255.1|983222_983930_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_087588780.1|987855_988689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085981747.1|988766_989480_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_033721558.1|989482_990352_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_007172259.1|990358_991576_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172260.1|991572_992616_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172261.1|992612_994178_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172262.1|994174_995689_+	virulence factor Mce family protein	NA	NA	NA	NA	NA
WP_033721559.1|995691_996819_+	virulence factor Mce family protein	NA	NA	NA	NA	NA
WP_007172264.1|996824_998369_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172267.1|1000038_1000962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033721575.1|1002717_1003734_+	diiron oxygenase	NA	NA	NA	NA	NA
WP_007172270.1|1003946_1004810_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_075362367.1|1005439_1006246_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_007172273.1|1006315_1007185_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_007172274.1|1007156_1008785_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007172275.1|1008781_1009735_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007172276.1|1010062_1010470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172277.1|1010749_1011037_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_007172278.1|1011063_1011516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050485493.1|1011503_1012625_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_042909844.1|1012841_1013645_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.5	9.3e-31
WP_042909843.1|1014606_1014894_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_046182709.1|1014890_1017356_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909842.1|1017352_1018576_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_033721569.1|1019736_1021245_-	carboxylesterase/lipase family protein	NA	A0A0M4JT58	Mollivirus	32.8	8.1e-28
WP_033721570.1|1021377_1022274_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_007172283.1|1022326_1022767_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_033721572.1|1022815_1023460_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172286.1|1023583_1025077_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_007172287.1|1025073_1026171_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_007172600.1|1026213_1027422_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_007172288.1|1027692_1028238_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_046187034.1|1031544_1034478_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_042909907.1|1034474_1034885_-	membrane protein	NA	NA	NA	NA	NA
WP_007172294.1|1034989_1036183_-	cytochrome P450	NA	NA	NA	NA	NA
WP_007172295.1|1036248_1036830_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033717424.1|1037475_1038099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087139652.1|1038083_1038695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930934.1|1039336_1040590_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	31.1	6.1e-29
1039250:1039282	attR	TGTCGGCGTCGTCTGAAAACTGACCCCGTGTCG	NA	NA	NA	NA
WP_075630243.1|1041021_1042257_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	45.2	1.7e-84
>prophage 4
NZ_CP015272	Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome	6175731	1066198	1139523	6175731	integrase,transposase	Staphylococcus_phage(50.0%)	47	1085728:1085744	1131330:1131346
WP_008256196.1|1066198_1067272_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_007168405.1|1071129_1072002_+	dehydrogenase	NA	NA	NA	NA	NA
WP_007168406.1|1072154_1072430_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_007168407.1|1072429_1072822_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_007168413.1|1077887_1078841_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007168414.1|1078837_1080415_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_042909913.1|1080436_1080982_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_080576328.1|1080968_1081343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074021308.1|1081373_1082195_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_007168420.1|1082577_1083321_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042909893.1|1083418_1084267_+	CoA transferase	NA	NA	NA	NA	NA
WP_019732177.1|1084263_1085439_+	thiolase family protein	NA	NA	NA	NA	NA
WP_007168424.1|1085448_1087125_+	long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA	NA
1085728:1085744	attL	CCCGGCATCGCCGCGGT	NA	NA	NA	NA
WP_007168425.1|1087121_1087898_+	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA	NA
WP_007168426.1|1087905_1089054_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_007168427.1|1089079_1089838_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_046184758.1|1090825_1092178_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.6	6.3e-32
WP_007168431.1|1092805_1093132_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042909891.1|1095714_1096950_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	45.2	1.0e-84
WP_101930903.1|1097801_1098392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930905.1|1098388_1099483_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_007168437.1|1100874_1102041_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2K9VF00	Mycobacterium_phage	29.1	1.6e-07
WP_007168443.1|1104895_1105327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101930902.1|1107979_1109596_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	25.3	6.6e-28
WP_007168450.1|1109648_1110590_+	R2-like ligand-binding oxidase	NA	NA	NA	NA	NA
WP_007168451.1|1110796_1111222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101930904.1|1111239_1112364_+	thiolase family protein	NA	NA	NA	NA	NA
WP_007168453.1|1112430_1113324_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_007168454.1|1113354_1114974_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	28.1	1.1e-30
WP_007168455.1|1115206_1116343_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_007168458.1|1118017_1119235_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_074021181.1|1119761_1120259_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_007168461.1|1120366_1121773_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_007168467.1|1124095_1124422_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_007168468.1|1124770_1125049_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_154074411.1|1125045_1125201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007168470.1|1125276_1125726_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_040622630.1|1126986_1128069_+	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_136244823.1|1130494_1130776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157137495.1|1131692_1132139_-	hypothetical protein	NA	A0A220NQR7	Corynebacterium_phage	40.8	2.9e-10
1131330:1131346	attR	ACCGCGGCGATGCCGGG	NA	NA	NA	NA
WP_075362207.1|1132764_1133076_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_101930934.1|1133091_1134345_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	31.1	6.1e-29
WP_155250266.1|1134789_1134933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007168486.1|1136746_1137088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007168487.1|1137108_1137516_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_033711258.1|1137519_1137792_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_042909886.1|1138287_1139523_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	45.0	2.2e-84
>prophage 5
NZ_CP015272	Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome	6175731	2152287	2206811	6175731	integrase,transposase	Tupanvirus(57.14%)	28	2153008:2153067	2213227:2214580
WP_080691159.1|2152287_2152953_+|transposase	TnsA-like heteromeric transposase endonuclease subunit	transposase	NA	NA	NA	NA
2153008:2153067	attL	TGAACCGCCCCGGGTTTGATGCACACCTTCTTTCGAGGGAAGGTTGTTCGCATCATGCCG	NA	NA	NA	NA
WP_087139680.1|2153061_2154331_+|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	41.7	3.7e-50
WP_042911237.1|2154360_2156475_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_080691160.1|2156480_2157650_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_074021449.1|2157725_2160266_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069953761.1|2163702_2164515_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.1	3.8e-32
WP_042909843.1|2165479_2165767_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_046182709.1|2165763_2168229_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909842.1|2168225_2169449_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_157679854.1|2170560_2172360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042911243.1|2172537_2172798_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042911244.1|2173218_2173806_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_142383138.1|2174124_2174556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142383139.1|2174586_2174964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087139682.1|2174926_2175865_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_042911246.1|2176263_2179263_-	nocobactin polyketide synthase NbtC	NA	NA	NA	NA	NA
WP_042911247.1|2179259_2180561_-	polyketide synthase	NA	NA	NA	NA	NA
WP_042911248.1|2180557_2181292_-	thioesterase	NA	NA	NA	NA	NA
WP_087139839.1|2181288_2181762_-	acetyltransferase	NA	NA	NA	NA	NA
WP_089148155.1|2181947_2185841_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.7	1.2e-94
WP_089148156.1|2185530_2189352_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	23.6	2.7e-35
WP_042911252.1|2189375_2192828_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	23.6	4.6e-34
WP_080691156.1|2192828_2194217_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA	NA
WP_080691157.1|2196299_2200340_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	24.6	1.5e-41
WP_080691115.1|2200385_2201552_-	PLP-dependent cysteine synthase family protein	NA	A0A1W6JHY1	Lactococcus_phage	33.0	2.6e-34
WP_051445860.1|2202695_2203439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072501249.1|2204352_2204733_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
WP_042909842.1|2205587_2206811_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
2213227:2214580	attR	CGGCATGATGCGAACAACCTTCCCTCGAAAGAAGGTGTGCATCAAACCCGGGGCGGTTCATCCCGCGCTGTGCGGTGTGTACGCAGCTGCTGTCCACGGTGCTTCCTTTGACGGCCGCGAAACCGGGCCGCCCGTAACAACTACTATCTATGTACAGAGATAGTAGTTGCTGCGGAGGCGCCCCACAATCACGAACTGAAGCGCATCGGCACACCTGCGGTGCGATCGGCCAGCCGTGTGCTCATCGCTTTGGGAGAGGCCCGGCGCCCGGGCGCGACGAGACGCCGGCAAGGTTGCGGCGAGTCGTTGTCCAATCGACGCACCCGGTCCACGTTTGCATTACTATCTACGTACGGAGAAAGTATCGCGATTCGGAGACCGGTGCGGCCCTGCCAGCGCGACAGACACCCGACACTGGTACCCGGGAGAGGTCCATAGTGCGGATACGAGGATTCGGAGAACTTGAGGCGGTCATCATGGACCGCATTTGGAACCGCGACCCGGCCGACGCGACCACAGTGCGCGAGGTCTTCGACGACCTTGCGGCCGAACGCACCATCGCGTACACGACGGTGATGTCCACGATGGACAACCTGCATACCAAGGGCTGGCTGCGGCGAGAACGCGATGGCAAGGCCTACCGGTATCGGCCCACCATGTCGCGCGAGCAGCACAGCGCCCGGCTCATGCGGGAGGCATTCGCCGGCGGCGGTCATCCCGATCTGGTGCTTCATCATTTCGTCGAACAGATCGGCCCTGAGGAATCCGCACGCCTGCGTGCTGCGCTGCGACGGCGGCGGTCGAAATGAGAGCCGACCAGCGGTGAACATCGCTATTTGCCTGCTGTTGTACAGCCTGGCGATGCTGGTCGCCGGACCGCCGCTGTTGCGTGAGCTGACTTGGCATGGACATGCCCCCCGATTTGGGGTTGCCGCCTGGTTGACCGCTATCGCCACGGTGCTACTGACCTGGCTGCTAGCAGCGGGAATGACCCTTCTCGCGGTAGCCAGTCACTGGATCTACCCGCGAGCGCTGGTGGAATCCTGTCTGGTCCGGTTGCGCGGCGTGGTGGCCCCCAGCATCACGCTGGGAGTAATCGGCGCAATGGTCGCGCTGCTGGCCGCGGTCAGCAGCGTGCGCCTGGCTAGCACCGTTTCGCGGATGCGTGCCCGCGCGCGTGCGCACGCCGAGGCGGTGTGCATGGTCGGTCATCGCAACGGCGATGGATATGTGCTTGTGGATGCCGCCGAGCCCGCCGCGTACTGTGTCGCAGGCCGGCCCCCCGCGATCGTCGTGACCAGCGCTGCCCTTGCTGCACTCGATGAGAAGGAGTTGGCTGCGGTCCTCGCCCACG	NA	NA	NA	NA
>prophage 6
NZ_CP015272	Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome	6175731	3948959	3958049	6175731		Shahe_endorna-like_virus(50.0%)	8	NA	NA
WP_042912268.1|3948959_3950216_+	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	34.4	4.3e-06
WP_042912270.1|3950223_3951003_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_009953302.1|3951098_3951902_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_020822883.1|3952017_3952824_-	methyltransferase MtfC	NA	A0A2R8FDY2	Brazilian_cedratvirus	53.1	7.6e-57
WP_072501358.1|3952919_3954206_-	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	44.4	1.2e-08
WP_042912274.1|3954619_3955888_-	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	38.7	4.3e-06
WP_041298244.1|3955979_3956786_-	macrocin O-methyltransferase	NA	A0A2R8FDY2	Brazilian_cedratvirus	53.1	6.4e-56
WP_042912275.1|3956939_3958049_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9L0I7	Tupanvirus	24.3	8.9e-16
>prophage 7
NZ_CP015272	Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome	6175731	4672075	4678651	6175731		Bacillus_phage(33.33%)	7	NA	NA
WP_042912786.1|4672075_4674241_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	3.3e-208
WP_008259183.1|4674210_4674663_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	40.2	5.8e-14
WP_008259184.1|4674694_4674934_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	63.2	1.3e-20
WP_008259185.1|4675462_4676017_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	34.4	1.2e-05
WP_008259186.1|4676108_4676723_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008259187.1|4676731_4677775_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	29.1	3.9e-21
WP_008259188.1|4677709_4678651_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	28.8	1.2e-05
>prophage 8
NZ_CP015272	Mycobacterium chimaera strain ZUERICH-1 chromosome, complete genome	6175731	5236399	5245045	6175731		Burkholderia_phage(50.0%)	8	NA	NA
WP_014385777.1|5236399_5237926_+	cyclic nucleotide-binding domain-containing protein	NA	W8CYF6	Bacillus_phage	37.4	1.3e-12
WP_042913325.1|5237965_5238805_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_042913327.1|5238801_5239668_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_008260499.1|5239695_5240691_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.5	5.8e-75
WP_042913511.1|5240692_5241310_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	38.8	1.3e-27
WP_042913329.1|5241509_5242631_+	acyltransferase	NA	A9YX16	Burkholderia_phage	27.7	2.9e-14
WP_042913331.1|5242760_5243897_+	acyltransferase	NA	A9YX16	Burkholderia_phage	28.0	2.6e-18
WP_042913512.1|5243956_5245045_+	acyltransferase	NA	A9YX16	Burkholderia_phage	29.4	1.3e-16
