assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002220215.1_ASM222021v1	NZ_CP022393	Escherichia coli strain E62 chromosome, complete genome	1	1942766-1942859	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGATGTAACAACGCGCACAGATCAGTCCCC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|310aa|up_9|NZ_CP022393.1_1935705_1936635_-,NA|326aa|down_5|NZ_CP022393.1_1947566_1948544_+	NA|310aa|up_9|NZ_CP022393.1_1935705_1936635_-	NA	NA|143aa|up_8|NZ_CP022393.1_1936761_1937190_-	pfam05130, FlgN, FlgN protein	NA|93aa|up_7|NZ_CP022393.1_1937202_1937481_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|246aa|up_6|NZ_CP022393.1_1937561_1938299_-	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|112aa|up_5|NZ_CP022393.1_1938380_1938716_+	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|144aa|up_4|NZ_CP022393.1_1938718_1939150_+	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|238aa|up_3|NZ_CP022393.1_1939149_1939863_+	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|401aa|up_2|NZ_CP022393.1_1939886_1941089_+	PRK06803, flgE, flagellar basal body protein FlaE	NA|246aa|up_1|NZ_CP022393.1_1941088_1941826_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|up_0|NZ_CP022393.1_1941904_1942690_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|222aa|down_0|NZ_CP022393.1_1942961_1943627_+	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|367aa|down_1|NZ_CP022393.1_1943641_1944742_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|100aa|down_2|NZ_CP022393.1_1944741_1945041_+	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|459aa|down_3|NZ_CP022393.1_1945229_1946606_+	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|310aa|down_4|NZ_CP022393.1_1946620_1947550_+	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|326aa|down_5|NZ_CP022393.1_1947566_1948544_+	NA	NA|281aa|down_6|NZ_CP022393.1_1948598_1949441_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|305aa|down_7|NZ_CP022393.1_1949926_1950841_+	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|439aa|down_8|NZ_CP022393.1_1951046_1952363_+	PRK08032, fliD, flagellar capping protein; Reviewed	NA|131aa|down_9|NZ_CP022393.1_1952385_1952778_+	pfam02561, FliS, Flagellar protein FliS
GCF_002220215.1_ASM222021v1	NZ_CP022393	Escherichia coli strain E62 chromosome, complete genome	2	2231252-2231348	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|454aa|up_9|NZ_CP022393.1_2219131_2220493_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP022393.1_2220549_2221851_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP022393.1_2221872_2223018_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP022393.1_2223146_2223932_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP022393.1_2223942_2225178_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP022393.1_2225199_2226249_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP022393.1_2226565_2228233_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP022393.1_2228242_2229502_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP022393.1_2229512_2230328_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP022393.1_2230324_2231218_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP022393.1_2231412_2232480_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP022393.1_2232476_2232986_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP022393.1_2233103_2233826_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP022393.1_2233828_2234323_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP022393.1_2234496_2235882_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP022393.1_2235917_2236439_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP022393.1_2236546_2236759_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP022393.1_2236760_2237627_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|231aa|down_8|NZ_CP022393.1_2238869_2239562_+	PRK15195, PRK15195, molecular chaperone FimC	NA|870aa|down_9|NZ_CP022393.1_2239592_2242202_+	PRK15198, PRK15198, outer membrane usher protein FimD
GCF_002220215.1_ASM222021v1	NZ_CP022393	Escherichia coli strain E62 chromosome, complete genome	3	4192796-4192884	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGTTGGACAACCGTTGGACAATC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|134aa|up_5|NZ_CP022393.1_4188602_4189004_-,NA|109aa|up_1|NZ_CP022393.1_4190560_4190887_-,NA|123aa|down_3|NZ_CP022393.1_4194885_4195254_+,NA|100aa|down_4|NZ_CP022393.1_4195621_4195921_+,NA|108aa|down_5|NZ_CP022393.1_4195929_4196253_+,NA|67aa|down_6|NZ_CP022393.1_4196424_4196625_+	NA|222aa|up_9|NZ_CP022393.1_4186983_4187649_-	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain	NA|69aa|up_8|NZ_CP022393.1_4187626_4187833_-	pfam06322, Phage_NinH, Phage NinH protein	NA|204aa|up_7|NZ_CP022393.1_4187829_4188441_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|70aa|up_6|NZ_CP022393.1_4188433_4188643_-	pfam05810, NinF, NinF protein	NA|134aa|up_5|NZ_CP022393.1_4188602_4189004_-	NA	NA|59aa|up_4|NZ_CP022393.1_4189006_4189183_-	pfam05322, NinE, NINE Protein	NA|197aa|up_3|NZ_CP022393.1_4189319_4189910_-	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]	NA|147aa|up_2|NZ_CP022393.1_4189906_4190347_-	pfam05772, NinB, NinB protein	NA|109aa|up_1|NZ_CP022393.1_4190560_4190887_-	NA	NA|479aa|up_0|NZ_CP022393.1_4190962_4192399_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|93aa|down_0|NZ_CP022393.1_4193461_4193740_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|65aa|down_1|NZ_CP022393.1_4193848_4194043_-	pfam09048, Cro, Cro	NA|239aa|down_2|NZ_CP022393.1_4194149_4194866_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|123aa|down_3|NZ_CP022393.1_4194885_4195254_+	NA	NA|100aa|down_4|NZ_CP022393.1_4195621_4195921_+	NA	NA|108aa|down_5|NZ_CP022393.1_4195929_4196253_+	NA	NA|67aa|down_6|NZ_CP022393.1_4196424_4196625_+	NA	NA|323aa|down_7|NZ_CP022393.1_4196759_4197728_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|44aa|down_8|NZ_CP022393.1_4197752_4197884_+	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|51aa|down_9|NZ_CP022393.1_4197868_4198021_+	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein
GCF_002220215.1_ASM222021v1	NZ_CP022393	Escherichia coli strain E62 chromosome, complete genome	4	4632724-4633608	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,12	14	TypeI-E	cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP022393.1_4624536_4625298_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP022393.1_4625278_4626328_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP022393.1_4626324_4626804_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP022393.1_4626803_4627514_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP022393.1_4627532_4627844_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP022393.1_4628037_4628361_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP022393.1_4628410_4629016_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP022393.1_4629015_4630443_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP022393.1_4630444_4631353_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP022393.1_4631604_4632642_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP022393.1_4633704_4633998_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP022393.1_4633997_4634918_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP022393.1_4634914_4635565_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP022393.1_4635546_4636293_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP022393.1_4636303_4637359_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP022393.1_4637370_4637907_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP022393.1_4637903_4639466_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP022393.1_4639563_4642263_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP022393.1_4642455_4642608_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP022393.1_4642872_4643607_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002220215.1_ASM222021v1	NZ_CP022393	Escherichia coli strain E62 chromosome, complete genome	5	4659307-4660128	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Unclear	cas3,csa3,DEDDh,c2c9_V-U4,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP022393.1_4661277_4661418_+	NA|424aa|up_9|NZ_CP022393.1_4647950_4649222_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP022393.1_4649212_4649473_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP022393.1_4649489_4650065_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP022393.1_4650212_4651073_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP022393.1_4651069_4651849_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP022393.1_4651826_4653164_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP022393.1_4653257_4654712_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP022393.1_4654781_4655567_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP022393.1_4655885_4657163_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP022393.1_4657189_4658668_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP022393.1_4660467_4661139_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP022393.1_4661277_4661418_+	NA	NA|433aa|down_2|NZ_CP022393.1_4662363_4663662_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP022393.1_4663749_4665387_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP022393.1_4665614_4666406_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP022393.1_4666476_4666812_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP022393.1_4666811_4667060_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP022393.1_4667137_4669372_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP022393.1_4669419_4670721_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP022393.1_4670777_4673534_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
