assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002220465.1_ASM222046v1	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1	591913-592012	1	PILER-CR	no		csa3,WYL	Orphan	CACGCAGAAACGGGTACGCTC	21	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|52aa|up_7|NZ_CP016915.1_582216_582372_+,NA|125aa|up_6|NZ_CP016915.1_582439_582814_-,NA|290aa|up_3|NZ_CP016915.1_585649_586519_-,NA|153aa|up_2|NZ_CP016915.1_586911_587370_-,NA|278aa|down_4|NZ_CP016915.1_599363_600197_+	NA|462aa|up_9|NZ_CP016915.1_579070_580456_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|387aa|up_8|NZ_CP016915.1_580983_582144_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|52aa|up_7|NZ_CP016915.1_582216_582372_+	NA	NA|125aa|up_6|NZ_CP016915.1_582439_582814_-	NA	NA|501aa|up_5|NZ_CP016915.1_583190_584693_+	PRK12469, PRK12469, RNA polymerase factor sigma-54; Provisional	NA|262aa|up_4|NZ_CP016915.1_584833_585619_+	COG3233, COG3233, Predicted deacetylase [General function prediction only]	NA|290aa|up_3|NZ_CP016915.1_585649_586519_-	NA	NA|153aa|up_2|NZ_CP016915.1_586911_587370_-	NA	NA|797aa|up_1|NZ_CP016915.1_587620_590011_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|423aa|up_0|NZ_CP016915.1_590525_591794_+	PRK00283, xerD, tyrosine recombinase	NA|435aa|down_0|NZ_CP016915.1_592074_593379_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|68aa|down_1|NZ_CP016915.1_596771_596975_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|223aa|down_2|NZ_CP016915.1_597379_598048_+	cd02042, ParAB_family, partition proteins ParAB family	NA|335aa|down_3|NZ_CP016915.1_598044_599049_+	COG1475, Spo0J, Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]	NA|278aa|down_4|NZ_CP016915.1_599363_600197_+	NA	NA|322aa|down_5|NZ_CP016915.1_600454_601420_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|448aa|down_6|NZ_CP016915.1_601682_603026_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|636aa|down_7|NZ_CP016915.1_603038_604946_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|455aa|down_8|NZ_CP016915.1_604938_606303_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|266aa|down_9|NZ_CP016915.1_606308_607106_-	COG4377, COG4377, Predicted membrane protein [Function unknown]
GCF_002220465.1_ASM222046v1	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	2	1058474-1058631	1	CRISPRCasFinder	no	csa3	csa3,WYL	Type I-A	GCCAAGGCCGGCAGCAAGTTCGATCCGTACACGGATGG	38	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|100aa|up_0|NZ_CP016915.1_1055195_1055495_+,NA|118aa|down_3|NZ_CP016915.1_1067971_1068325_-	NA|612aa|up_9|NZ_CP016915.1_1043655_1045491_+	PRK06007, fliF, flagellar basal body M-ring protein FliF	NA|331aa|up_8|NZ_CP016915.1_1045487_1046480_+	PRK05686, fliG, flagellar motor switch protein G; Validated	NA|249aa|up_7|NZ_CP016915.1_1046515_1047262_+	PRK05687, fliH, flagellar assembly protein FliH	NA|482aa|up_6|NZ_CP016915.1_1047251_1048697_+	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|156aa|up_5|NZ_CP016915.1_1048795_1049263_+	COG2882, FliJ, Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]	NA|519aa|up_4|NZ_CP016915.1_1049283_1050840_+	COG3144, FliK, Flagellar hook-length control protein [Cell motility and secretion]	NA|327aa|up_3|NZ_CP016915.1_1051184_1052165_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|184aa|up_2|NZ_CP016915.1_1052335_1052887_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|489aa|up_1|NZ_CP016915.1_1052934_1054401_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|100aa|up_0|NZ_CP016915.1_1055195_1055495_+	NA	NA|480aa|down_0|NZ_CP016915.1_1063962_1065402_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|down_1|NZ_CP016915.1_1065398_1066463_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|307aa|down_2|NZ_CP016915.1_1066654_1067575_+	PRK09986, PRK09986, LysR family transcriptional regulator	NA|118aa|down_3|NZ_CP016915.1_1067971_1068325_-	NA	NA|322aa|down_4|NZ_CP016915.1_1068395_1069361_-	cd00519, Lipase_3, Lipase (class 3)	NA|269aa|down_5|NZ_CP016915.1_1069502_1070308_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|126aa|down_6|NZ_CP016915.1_1070751_1071129_+	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|161aa|down_7|NZ_CP016915.1_1071451_1071934_-	cd08893, SRPBCC_CalC_Aha1-like_GntR-HTH, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain	csa3|112aa|down_8|NZ_CP016915.1_1071926_1072262_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|195aa|down_9|NZ_CP016915.1_1072511_1073096_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_002220465.1_ASM222046v1	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	3	1576912-1577084	2	PILER-CR	no		csa3,WYL	Orphan	GTGTTGGCAGCCAGTGCTTGCGCGCCCGC	29	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|140aa|up_6|NZ_CP016915.1_1568509_1568929_-,NA|83aa|up_3|NZ_CP016915.1_1573658_1573907_-,NA|146aa|down_6|NZ_CP016915.1_1585606_1586044_+,NA|62aa|down_8|NZ_CP016915.1_1587779_1587965_+	NA|1048aa|up_9|NZ_CP016915.1_1562455_1565599_-	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|514aa|up_8|NZ_CP016915.1_1565595_1567137_-	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion	NA|435aa|up_7|NZ_CP016915.1_1567133_1568438_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|140aa|up_6|NZ_CP016915.1_1568509_1568929_-	NA	NA|284aa|up_5|NZ_CP016915.1_1569349_1570201_-	cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods	NA|492aa|up_4|NZ_CP016915.1_1570939_1572415_+	pfam13565, HTH_32, Homeodomain-like domain	NA|83aa|up_3|NZ_CP016915.1_1573658_1573907_-	NA	NA|290aa|up_2|NZ_CP016915.1_1573906_1574776_-	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|221aa|up_1|NZ_CP016915.1_1574817_1575480_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|190aa|up_0|NZ_CP016915.1_1575533_1576103_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|369aa|down_0|NZ_CP016915.1_1578694_1579801_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|314aa|down_1|NZ_CP016915.1_1580098_1581040_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|310aa|down_2|NZ_CP016915.1_1582453_1583383_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|223aa|down_3|NZ_CP016915.1_1583485_1584154_+	COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|305aa|down_4|NZ_CP016915.1_1584230_1585145_+	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family	NA|128aa|down_5|NZ_CP016915.1_1585248_1585632_+	cd02237, cupin_DAD_ChrR, 2,4'-Dihydroxyacetophenone dioxygenase (DAD) and anti-sigma factor ChrR, and similar proteins; cupin domain	NA|146aa|down_6|NZ_CP016915.1_1585606_1586044_+	NA	NA|567aa|down_7|NZ_CP016915.1_1586080_1587781_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|62aa|down_8|NZ_CP016915.1_1587779_1587965_+	NA	NA|492aa|down_9|NZ_CP016915.1_1589068_1590544_+	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I
GCF_002220465.1_ASM222046v1	NZ_CP016914	Ralstonia solanacearum strain CQPS-1 chromosome, complete genome	1	3693731-3693841	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	GCGGACGGCTCGGGACGAATATAGGGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|106aa|up_0|NZ_CP016914.1_3691481_3691799_+,NA	NA|178aa|up_9|NZ_CP016914.1_3681870_3682404_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|244aa|up_8|NZ_CP016914.1_3682400_3683132_-	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|90aa|up_7|NZ_CP016914.1_3683284_3683554_+	COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism]	NA|488aa|up_6|NZ_CP016914.1_3683605_3685069_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|157aa|up_5|NZ_CP016914.1_3685165_3685636_-	cd08863, SRPBCC_DUF1857, DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily	NA|234aa|up_4|NZ_CP016914.1_3687406_3688108_-	TIGR01428, Haloacetate_dehalogenase, 2-haloalkanoic acid dehalogenase, type II	NA|310aa|up_3|NZ_CP016914.1_3688527_3689457_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|145aa|up_2|NZ_CP016914.1_3689533_3689968_+	pfam00582, Usp, Universal stress protein family	NA|435aa|up_1|NZ_CP016914.1_3690098_3691403_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|106aa|up_0|NZ_CP016914.1_3691481_3691799_+	NA	NA|622aa|down_0|NZ_CP016914.1_3694273_3696139_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|138aa|down_1|NZ_CP016914.1_3696316_3696730_-	COG2105, COG2105, Uncharacterized conserved protein [Function unknown]	NA|169aa|down_2|NZ_CP016914.1_3696722_3697229_-	PRK09372, PRK09372, ribonuclease E inhibitor RraA	NA|582aa|down_3|NZ_CP016914.1_3697256_3699002_-	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated	NA|271aa|down_4|NZ_CP016914.1_3699086_3699899_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|98aa|down_5|NZ_CP016914.1_3701147_3701441_-	pfam13239, 2TM, 2TM domain	NA|686aa|down_6|NZ_CP016914.1_3701638_3703696_-	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|328aa|down_7|NZ_CP016914.1_3703844_3704828_-	PRK12683, PRK12683, transcriptional regulator CysB-like protein; Reviewed	NA|373aa|down_8|NZ_CP016914.1_3704862_3705981_-	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter	NA|327aa|down_9|NZ_CP016914.1_3705977_3706958_-	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
