assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002221505.1_ASM222150v1	NZ_CP011036	Pseudoalteromonas nigrifaciens strain KMM 661 chromosome I, complete sequence	1	439946-440161	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas5f,cas7f,cas6f	cas3,cas14j,c2c9_V-U4,cas5f,cas7f,cas6f,DEDDh,RT,WYL,csx1,DinG,csa3	Unclear	TTTTAAAGTGACCTGCCGAGTAGGCAGCTGAGAATG,GTGACCTGCCGAGTAGGCAGCTGAGAATG,GTGACCTGCCGAGTAGGCAGCTGAGAATG	36,29,29	0	0	NA	NA	NA:NA:NA	2,3,3	3	Unclear	cas3,cas14j,c2c9_V-U4,cas5f,cas7f,cas6f,DEDDh,RT,WYL,csx1,DinG,csa3	NA|80aa|up_9|NZ_CP011036.1_424867_425107_-,NA|183aa|up_5|NZ_CP011036.1_432733_433282_+,NA|327aa|down_2|NZ_CP011036.1_442488_443469_+,NA|371aa|down_3|NZ_CP011036.1_443461_444574_+	NA|80aa|up_9|NZ_CP011036.1_424867_425107_-	NA	NA|1923aa|up_8|NZ_CP011036.1_425119_430888_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|397aa|up_7|NZ_CP011036.1_430881_432072_-	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|103aa|up_6|NZ_CP011036.1_432228_432537_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|183aa|up_5|NZ_CP011036.1_432733_433282_+	NA	NA|460aa|up_4|NZ_CP011036.1_433275_434655_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|410aa|up_3|NZ_CP011036.1_434820_436050_+	pfam06527, TniQ, TniQ	cas5f|696aa|up_2|NZ_CP011036.1_436054_438142_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|351aa|up_1|NZ_CP011036.1_438156_439209_+	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3	cas6f|204aa|up_0|NZ_CP011036.1_439211_439823_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|150aa|down_0|NZ_CP011036.1_440405_440855_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|155aa|down_1|NZ_CP011036.1_441176_441641_+	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059)	NA|327aa|down_2|NZ_CP011036.1_442488_443469_+	NA	NA|371aa|down_3|NZ_CP011036.1_443461_444574_+	NA	NA|224aa|down_4|NZ_CP011036.1_444577_445249_+	TIGR02487, Anaerobic_Ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase	NA|247aa|down_5|NZ_CP011036.1_446035_446776_-	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase	NA|422aa|down_6|NZ_CP011036.1_446848_448114_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|381aa|down_7|NZ_CP011036.1_448182_449325_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|515aa|down_8|NZ_CP011036.1_449328_450873_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|144aa|down_9|NZ_CP011036.1_451501_451933_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
GCF_002221505.1_ASM222150v1	NZ_CP011036	Pseudoalteromonas nigrifaciens strain KMM 661 chromosome I, complete sequence	2	459818-459923	2	CRISPRCasFinder	no		cas3,cas14j,c2c9_V-U4,cas5f,cas7f,cas6f,DEDDh,RT,WYL,csx1,DinG,csa3	Orphan	TGCGCGAGGTAAACTCCCGCCTAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,c2c9_V-U4,cas5f,cas7f,cas6f,DEDDh,RT,WYL,csx1,DinG,csa3	NA,NA	NA|144aa|up_9|NZ_CP011036.1_451501_451933_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|86aa|up_8|NZ_CP011036.1_451964_452222_+	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	NA|163aa|up_7|NZ_CP011036.1_452262_452751_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|336aa|up_6|NZ_CP011036.1_452754_453762_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|155aa|up_5|NZ_CP011036.1_453943_454408_-	PRK10358, PRK10358, tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL	NA|289aa|up_4|NZ_CP011036.1_454568_455435_+	PRK09509, fieF, CDF family cation-efflux pump FieF	NA|311aa|up_3|NZ_CP011036.1_455785_456718_-	PRK10749, PRK10749, lysophospholipase L2; Provisional	NA|472aa|up_2|NZ_CP011036.1_456721_458137_-	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|230aa|up_1|NZ_CP011036.1_458114_458804_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|162aa|up_0|NZ_CP011036.1_458968_459454_+	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins	NA|77aa|down_0|NZ_CP011036.1_459995_460226_-	PRK00418, PRK00418, DNA gyrase inhibitor YacG	NA|558aa|down_1|NZ_CP011036.1_460898_462572_-	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|211aa|down_2|NZ_CP011036.1_462692_463325_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|307aa|down_3|NZ_CP011036.1_463326_464247_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|128aa|down_4|NZ_CP011036.1_464704_465088_-	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily	NA|406aa|down_5|NZ_CP011036.1_465748_466966_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|147aa|down_6|NZ_CP011036.1_466976_467417_-	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|139aa|down_7|NZ_CP011036.1_467437_467854_-	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|282aa|down_8|NZ_CP011036.1_468327_469173_-	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|516aa|down_9|NZ_CP011036.1_469399_470946_-	pfam00665, rve, Integrase core domain
GCF_002221505.1_ASM222150v1	NZ_CP011036	Pseudoalteromonas nigrifaciens strain KMM 661 chromosome I, complete sequence	3	573909-574161	2	PILER-CR	no	DEDDh,cas3	cas3,cas14j,c2c9_V-U4,cas5f,cas7f,cas6f,DEDDh,RT,WYL,csx1,DinG,csa3	Unclear	AATTACTGACTACTTTATAATGCGGTACTAGCTCAGTTGGTAGAGCGCGACCTTGCCAAGG	61	0	0	NA	NA	NA	2	2	Unclear	cas3,cas14j,c2c9_V-U4,cas5f,cas7f,cas6f,DEDDh,RT,WYL,csx1,DinG,csa3	NA,NA	NA|126aa|up_9|NZ_CP011036.1_563581_563959_+	pfam03724, META, META domain	NA|651aa|up_8|NZ_CP011036.1_564406_566359_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|334aa|up_7|NZ_CP011036.1_566447_567449_+	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|65aa|up_6|NZ_CP011036.1_567456_567651_+	COG2104, ThiS, Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|264aa|up_5|NZ_CP011036.1_567656_568448_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|509aa|up_4|NZ_CP011036.1_568459_569986_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|249aa|up_3|NZ_CP011036.1_570008_570755_+	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	NA|276aa|up_2|NZ_CP011036.1_570943_571771_-	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|353aa|up_1|NZ_CP011036.1_571825_572884_-	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	DEDDh|182aa|up_0|NZ_CP011036.1_573005_573551_+	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|143aa|down_0|NZ_CP011036.1_574486_574915_-	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|156aa|down_1|NZ_CP011036.1_574911_575379_-	cd17906, CheX, chemotaxis phosphatase CheX	NA|146aa|down_2|NZ_CP011036.1_575442_575880_-	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur	NA|323aa|down_3|NZ_CP011036.1_582648_583617_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|227aa|down_4|NZ_CP011036.1_583870_584551_+	TIGR02977, phage_shock_protein_A, phage shock protein A	NA|69aa|down_5|NZ_CP011036.1_584561_584768_+	TIGR02978, Phage_shock_protein_C	NA|170aa|down_6|NZ_CP011036.1_585207_585717_+	pfam04314, PCuAC, Copper chaperone PCu(A)C	NA|329aa|down_7|NZ_CP011036.1_585725_586712_+	pfam10095, DUF2333, Uncharacterized protein conserved in bacteria (DUF2333)	NA|259aa|down_8|NZ_CP011036.1_586715_587492_+	TIGR04219, hypothetical_protein, outer membrane protein	NA|290aa|down_9|NZ_CP011036.1_587528_588398_-	TIGR03899, hypothetical_protein, TIGR03899 family protein
GCF_002221505.1_ASM222150v1	NZ_CP011038	Pseudoalteromonas nigrifaciens strain KMM 661 plasmid unnamed, complete sequence	1	6033-6150	1	CRISPRCasFinder	no			Orphan	AAACTGCCCCAATTAATGGGGCGAATAAACTTTCCC	36	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,c2c9_V-U4,cas5f,cas7f,cas6f,DEDDh,RT,WYL,csx1,DinG,csa3	NA,NA|163aa|down_0|NZ_CP011038.1_6520_7009_+,NA|55aa|down_1|NZ_CP011038.1_7010_7175_+,NA|180aa|down_5|NZ_CP011038.1_12329_12869_-,NA|82aa|down_7|NZ_CP011038.1_13774_14020_+,NA|624aa|down_9|NZ_CP011038.1_14632_16504_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|402aa|up_4|NZ_CP011038.1_159_1365_+	pfam13614, AAA_31, AAA domain	NA|361aa|up_3|NZ_CP011038.1_1369_2452_+	pfam08775, ParB, ParB family	NA|87aa|up_2|NZ_CP011038.1_2824_3085_-	PRK09393, ftrA, transcriptional activator FtrA; Provisional	NA|102aa|up_1|NZ_CP011038.1_3530_3836_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|509aa|up_0|NZ_CP011038.1_3892_5419_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|163aa|down_0|NZ_CP011038.1_6520_7009_+	NA	NA|55aa|down_1|NZ_CP011038.1_7010_7175_+	NA	NA|94aa|down_2|NZ_CP011038.1_8376_8658_+	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily	NA|515aa|down_3|NZ_CP011038.1_9432_10978_-	pfam00665, rve, Integrase core domain	NA|291aa|down_4|NZ_CP011038.1_11163_12036_-	PRK02951, PRK02951, DNA replication terminus site-binding protein; Provisional	NA|180aa|down_5|NZ_CP011038.1_12329_12869_-	NA	NA|257aa|down_6|NZ_CP011038.1_12933_13704_-	pfam10881, DUF2726, Protein of unknown function (DUF2726)	NA|82aa|down_7|NZ_CP011038.1_13774_14020_+	NA	NA|69aa|down_8|NZ_CP011038.1_14352_14559_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|624aa|down_9|NZ_CP011038.1_14632_16504_+	NA
