assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	1	10687-10773	1	CRISPRCasFinder	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Orphan	GGGGTGTCGGGCGCGTGGGGCGGCAGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|604aa|up_8|NZ_CP022423.1_2749_4561_+,NA|101aa|up_7|NZ_CP022423.1_4560_4863_+,NA|80aa|up_5|NZ_CP022423.1_6101_6341_+,NA|224aa|up_3|NZ_CP022423.1_7056_7728_+,NA|115aa|down_7|NZ_CP022423.1_18492_18837_+	NA|319aa|up_9|NZ_CP022423.1_1769_2726_+	pfam04381, RdgC, Putative exonuclease, RdgC	NA|604aa|up_8|NZ_CP022423.1_2749_4561_+	NA	NA|101aa|up_7|NZ_CP022423.1_4560_4863_+	NA	NA|410aa|up_6|NZ_CP022423.1_4875_6105_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|80aa|up_5|NZ_CP022423.1_6101_6341_+	NA	NA|210aa|up_4|NZ_CP022423.1_6412_7042_+	pfam11363, DUF3164, Protein of unknown function (DUF3164)	NA|224aa|up_3|NZ_CP022423.1_7056_7728_+	NA	NA|239aa|up_2|NZ_CP022423.1_7727_8444_+	pfam06252, DUF1018, Protein of unknown function (DUF1018)	NA|133aa|up_1|NZ_CP022423.1_8440_8839_+	pfam08765, Mor, Mor transcription activator family	NA|484aa|up_0|NZ_CP022423.1_9033_10485_-	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|468aa|down_0|NZ_CP022423.1_11286_12690_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|85aa|down_1|NZ_CP022423.1_12721_12976_+	pfam14076, DUF4258, Domain of unknown function (DUF4258)	NA|66aa|down_2|NZ_CP022423.1_12979_13177_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|61aa|down_3|NZ_CP022423.1_13160_13343_+	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system	NA|505aa|down_4|NZ_CP022423.1_13395_14910_-	PRK11767, PRK11767, SpoVR family protein; Provisional	NA|432aa|down_5|NZ_CP022423.1_14906_16202_-	pfam04285, DUF444, Protein of unknown function (DUF444)	NA|641aa|down_6|NZ_CP022423.1_16226_18149_-	PRK15455, PRK15455, PrkA family serine protein kinase; Provisional	NA|115aa|down_7|NZ_CP022423.1_18492_18837_+	NA	NA|300aa|down_8|NZ_CP022423.1_18842_19742_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|197aa|down_9|NZ_CP022423.1_19770_20361_-	pfam06821, Ser_hydrolase, Serine hydrolase
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	2	402581-402672	2	CRISPRCasFinder	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Orphan	GCCTCAGCCCACGCGGGCGCGGGCCGTTTGT	31	1	3	402612-402641|402612-402641|402612-402641	NZ_CP022423.1_1822683-1822654|NZ_CP022423.1_2261472-2261501|NZ_CP022425.1_30234-30263	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|88aa|down_2|NZ_CP022423.1_406137_406401_-	NA|170aa|up_9|NZ_CP022423.1_389222_389732_+	cd07177, terB_like, tellurium resistance terB-like protein	NA|552aa|up_8|NZ_CP022423.1_389792_391448_-	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|843aa|up_7|NZ_CP022423.1_391516_394045_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|170aa|up_6|NZ_CP022423.1_394007_394517_-	cd13563, PBP2_SsuA_like_6, Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold	NA|133aa|up_5|NZ_CP022423.1_394504_394903_-	cd13563, PBP2_SsuA_like_6, Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold	NA|284aa|up_4|NZ_CP022423.1_395180_396032_-	pfam04216, FdhE, Protein involved in formate dehydrogenase formation	NA|294aa|up_3|NZ_CP022423.1_396064_396946_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|207aa|up_2|NZ_CP022423.1_397114_397735_-	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit	NA|313aa|up_1|NZ_CP022423.1_397731_398670_-	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|1036aa|up_0|NZ_CP022423.1_398687_401795_-	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|653aa|down_0|NZ_CP022423.1_403500_405459_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|217aa|down_1|NZ_CP022423.1_405459_406110_-	PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed	NA|88aa|down_2|NZ_CP022423.1_406137_406401_-	NA	NA|368aa|down_3|NZ_CP022423.1_406449_407553_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1023aa|down_4|NZ_CP022423.1_407549_410618_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|159aa|down_5|NZ_CP022423.1_410743_411220_+	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|79aa|down_6|NZ_CP022423.1_411305_411542_+	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain	NA|326aa|down_7|NZ_CP022423.1_411528_412506_-	PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional	NA|955aa|down_8|NZ_CP022423.1_412508_415373_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|323aa|down_9|NZ_CP022423.1_415450_416419_+	PRK05231, PRK05231, homoserine kinase; Provisional
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	3	435645-442814	3,1,1,2,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Type I-E	GTGTTCCCCACGGGGGTGGGGATGAACCG,GTGTTCCCCACGGGGGTGGGGATGAACCG,GTGTTCCCCACGGGGGTGGGGATGAACCG,GTGTTCCCCACGGGGGTGGGGATGAACCG,GTGTTCCCCACGGGGGTGGGGATGAACC,GTGTTCCCCACGGGGGTGGGGATGAACCG	29,29,29,29,28,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B:I-E,II-B:I-E,II-B:I-E,II-B	117,117,110,110,110,110	117	TypeI-E	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|87aa|down_0|NZ_CP022423.1_442839_443100_+,NA|200aa|down_1|NZ_CP022423.1_443205_443805_-,NA|148aa|down_7|NZ_CP022423.1_447426_447870_-	cas3|350aa|up_9|NZ_CP022423.1_427618_428668_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	NA|62aa|up_8|NZ_CP022423.1_428692_428878_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|132aa|up_7|NZ_CP022423.1_428889_429285_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	cas8e|601aa|up_6|NZ_CP022423.1_429316_431119_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|192aa|up_5|NZ_CP022423.1_431144_431720_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|357aa|up_4|NZ_CP022423.1_431751_432822_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|270aa|up_3|NZ_CP022423.1_432827_433637_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|241aa|up_2|NZ_CP022423.1_433627_434350_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|305aa|up_1|NZ_CP022423.1_434355_435270_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|100aa|up_0|NZ_CP022423.1_435250_435550_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|87aa|down_0|NZ_CP022423.1_442839_443100_+	NA	NA|200aa|down_1|NZ_CP022423.1_443205_443805_-	NA	NA|193aa|down_2|NZ_CP022423.1_444075_444654_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|286aa|down_3|NZ_CP022423.1_444712_445570_+	TIGR02796, Protein_TolQ, TolQ protein	NA|143aa|down_4|NZ_CP022423.1_445586_446015_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|141aa|down_5|NZ_CP022423.1_446032_446455_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|327aa|down_6|NZ_CP022423.1_446461_447442_+	cd07726, ST1585-like_MBL-fold, uncharacterized subgroup which includes Sulfolobus tokodaii ST1585 protein; MBL-fold metallo hydrolase domain	NA|148aa|down_7|NZ_CP022423.1_447426_447870_-	NA	NA|312aa|down_8|NZ_CP022423.1_447957_448893_+	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|250aa|down_9|NZ_CP022423.1_448918_449668_-	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	4	1404982-1405091	4	CRISPRCasFinder	no	RT,DEDDh	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Unclear	GCGCCAACTGCACCCGCTCAAACAGTGGAAACTCAGC	37	1	1	1405019-1405054	NZ_CP022423.1_1391776-1391811	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|54aa|down_4|NZ_CP022423.1_1412279_1412441_+	NA|639aa|up_9|NZ_CP022423.1_1393618_1395535_-	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|351aa|up_8|NZ_CP022423.1_1395729_1396782_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|219aa|up_7|NZ_CP022423.1_1396835_1397492_-	pfam13682, CZB, Chemoreceptor zinc-binding domain	NA|606aa|up_6|NZ_CP022423.1_1397760_1399578_+	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	DEDDh|232aa|up_5|NZ_CP022423.1_1399610_1400306_+	PRK09145, PRK09145, 3'-5' exonuclease	NA|182aa|up_4|NZ_CP022423.1_1400324_1400870_+	pfam13682, CZB, Chemoreceptor zinc-binding domain	NA|173aa|up_3|NZ_CP022423.1_1400880_1401399_-	PRK00808, PRK00808, bacteriohemerythrin	NA|202aa|up_2|NZ_CP022423.1_1401520_1402126_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|401aa|up_1|NZ_CP022423.1_1402115_1403318_-	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase	NA|164aa|up_0|NZ_CP022423.1_1403523_1404015_+	pfam13682, CZB, Chemoreceptor zinc-binding domain	NA|339aa|down_0|NZ_CP022423.1_1405506_1406523_+	TIGR04215, conserved_hypothetical_protein, choice-of-anchor A domain	NA|999aa|down_1|NZ_CP022423.1_1406680_1409677_+	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain	NA|645aa|down_2|NZ_CP022423.1_1409651_1411586_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|213aa|down_3|NZ_CP022423.1_1411536_1412175_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|54aa|down_4|NZ_CP022423.1_1412279_1412441_+	NA	NA|479aa|down_5|NZ_CP022423.1_1412675_1414112_+	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|551aa|down_6|NZ_CP022423.1_1416344_1417997_+	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins	NA|277aa|down_7|NZ_CP022423.1_1417998_1418829_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|279aa|down_8|NZ_CP022423.1_1418861_1419698_+	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|216aa|down_9|NZ_CP022423.1_1419922_1420570_+	COG3047, OmpW, Outer membrane protein W [Cell envelope biogenesis, outer membrane]
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	5	1553505-1554917	5,5,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Orphan	GTCTGACTGGCTTCCCTGGCTTTGAAGGGATTAAGAC,GTCTGACTGGCTTCCCTGGCTTTGAAGGGATTAAGAC,GTCTGACTGGCTTCCCTGGCTTTGAAGGGATTAAGAC	37,37,37	0	0	NA	NA	NA:NA:NA	19,19,20	20	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|133aa|down_3|NZ_CP022423.1_1559852_1560251_-,NA|230aa|down_4|NZ_CP022423.1_1560281_1560971_-,NA|237aa|down_5|NZ_CP022423.1_1561111_1561822_-	NA|123aa|up_9|NZ_CP022423.1_1543578_1543947_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|319aa|up_8|NZ_CP022423.1_1544071_1545028_+	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|152aa|up_7|NZ_CP022423.1_1545033_1545489_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|304aa|up_6|NZ_CP022423.1_1545485_1546397_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|160aa|up_5|NZ_CP022423.1_1546439_1546919_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|419aa|up_4|NZ_CP022423.1_1546992_1548249_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|378aa|up_3|NZ_CP022423.1_1548320_1549454_+	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed	NA|269aa|up_2|NZ_CP022423.1_1549457_1550264_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|595aa|up_1|NZ_CP022423.1_1550253_1552038_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|390aa|up_0|NZ_CP022423.1_1552122_1553292_+	COG5322, COG5322, Predicted dehydrogenase [General function prediction only]	NA|638aa|down_0|NZ_CP022423.1_1554948_1556862_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|266aa|down_1|NZ_CP022423.1_1556985_1557783_+	pfam14344, DUF4397, Domain of unknown function (DUF4397)	NA|628aa|down_2|NZ_CP022423.1_1557902_1559786_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|133aa|down_3|NZ_CP022423.1_1559852_1560251_-	NA	NA|230aa|down_4|NZ_CP022423.1_1560281_1560971_-	NA	NA|237aa|down_5|NZ_CP022423.1_1561111_1561822_-	NA	NA|321aa|down_6|NZ_CP022423.1_1562002_1562965_+	PRK05246, PRK05246, glutathione synthetase; Provisional	NA|174aa|down_7|NZ_CP022423.1_1562898_1563420_-	cd06066, H2MP_NAD-link-bidir, Endopeptidases that belong to the bidirectional NAD-linked hydrogenase group	NA|513aa|down_8|NZ_CP022423.1_1563419_1564958_-	COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion]	NA|162aa|down_9|NZ_CP022423.1_1564950_1565436_-	COG1941, FrhG, Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	6	1874762-1874885	6	CRISPRCasFinder	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Orphan	GGTAGAGCAGCGGACTTTTAATCCGTTGGTCG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|539aa|up_9|NZ_CP022423.1_1864417_1866034_-,NA|53aa|up_6|NZ_CP022423.1_1868652_1868811_+,NA	NA|539aa|up_9|NZ_CP022423.1_1864417_1866034_-	NA	NA|584aa|up_8|NZ_CP022423.1_1866123_1867875_+	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	NA|141aa|up_7|NZ_CP022423.1_1868080_1868503_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|53aa|up_6|NZ_CP022423.1_1868652_1868811_+	NA	NA|205aa|up_5|NZ_CP022423.1_1868889_1869504_+	PRK01839, PRK01839, septum formation inhibitor Maf	NA|491aa|up_4|NZ_CP022423.1_1869547_1871020_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|427aa|up_3|NZ_CP022423.1_1871179_1872460_+	PRK02889, tolB, Tol-Pal system protein TolB	NA|204aa|up_2|NZ_CP022423.1_1872495_1873107_+	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|262aa|up_1|NZ_CP022423.1_1873108_1873894_+	TIGR02795, Uncharacterized_protein_in_oprL_3'region, tol-pal system protein YbgF	NA|264aa|up_0|NZ_CP022423.1_1873890_1874682_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|121aa|down_0|NZ_CP022423.1_1875086_1875449_+	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC	NA|512aa|down_1|NZ_CP022423.1_1875432_1876968_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|725aa|down_2|NZ_CP022423.1_1877015_1879190_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|246aa|down_3|NZ_CP022423.1_1879319_1880057_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|257aa|down_4|NZ_CP022423.1_1880147_1880918_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|271aa|down_5|NZ_CP022423.1_1880914_1881727_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|291aa|down_6|NZ_CP022423.1_1881759_1882632_+	PRK10871, nlpD, murein hydrolase activator NlpD	NA|449aa|down_7|NZ_CP022423.1_1882669_1884016_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|231aa|down_8|NZ_CP022423.1_1884083_1884776_-	cd10433, YccA_like, YccA-like proteins	NA|366aa|down_9|NZ_CP022423.1_1885043_1886141_+	pfam07603, DUF1566, Protein of unknown function (DUF1566)
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	7	2200453-2202004	7,3,6	CRISPRCasFinder,CRT,PILER-CR	no	csx16,csx1,cas1,cas2,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Type III-A,Type III-D,Type III-B,Type III-C	GTCTTAATCCCTTCAAAGCCAGGGAAGCCAGTCAGAC,GTCTTAATCCCTTCAAAGCCAGGGAAGCCAGTCAGAC,GTCTGACTGGCTTCCCTGGCTTTGAAGGGATTAAGAC	37,37,37	3	3	2201316-2201347|2201453-2201484|2201936-2201967	NZ_CP022423.1_1058355-1058386|NZ_CP022423.1_1441411-1441380|NZ_CP022423.1_2224865-2224834	NA:NA:NA	22,22,19	22	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|505aa|up_5|NZ_CP022423.1_2194742_2196257_+,NA|683aa|up_4|NZ_CP022423.1_2196276_2198325_+,NA|232aa|up_3|NZ_CP022423.1_2198371_2199067_+,NA|136aa|up_2|NZ_CP022423.1_2199138_2199546_+,NA|102aa|up_1|NZ_CP022423.1_2199615_2199921_-,NA|272aa|down_1|NZ_CP022423.1_2203502_2204318_+,NA|70aa|down_2|NZ_CP022423.1_2204390_2204600_+,cas6|336aa|down_8|NZ_CP022423.1_2212614_2213622_+	NA|163aa|up_9|NZ_CP022423.1_2192252_2192741_+	TIGR04494, cytochrome_c550, cytochrome c-550 PedF	NA|289aa|up_8|NZ_CP022423.1_2192740_2193607_+	cd01000, PBP2_Cys_DEBP_like, Substrate-binding domain of cysteine- and aspartate/glutamate-binding proteins; the type 2 periplasmic-binding protein fold	csx16|139aa|up_7|NZ_CP022423.1_2193587_2194004_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	NA|145aa|up_6|NZ_CP022423.1_2194185_2194620_+	cd09030, DUF1425, Putative periplasmic lipoprotein	NA|505aa|up_5|NZ_CP022423.1_2194742_2196257_+	NA	NA|683aa|up_4|NZ_CP022423.1_2196276_2198325_+	NA	NA|232aa|up_3|NZ_CP022423.1_2198371_2199067_+	NA	NA|136aa|up_2|NZ_CP022423.1_2199138_2199546_+	NA	NA|102aa|up_1|NZ_CP022423.1_2199615_2199921_-	NA	NA|139aa|up_0|NZ_CP022423.1_2199987_2200404_-	pfam18673, IrmA, interleukin receptor mimic protein A	csx1|400aa|down_0|NZ_CP022423.1_2202141_2203341_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|272aa|down_1|NZ_CP022423.1_2203502_2204318_+	NA	NA|70aa|down_2|NZ_CP022423.1_2204390_2204600_+	NA	NA|337aa|down_3|NZ_CP022423.1_2204611_2205622_+	pfam02956, TT_ORF1, TT viral orf 1	csx1|167aa|down_4|NZ_CP022423.1_2205543_2206044_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	cas1|680aa|down_5|NZ_CP022423.1_2206955_2208995_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas2|94aa|down_6|NZ_CP022423.1_2209005_2209287_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx1|399aa|down_7|NZ_CP022423.1_2211421_2212618_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas6|336aa|down_8|NZ_CP022423.1_2212614_2213622_+	NA	cmr1gr7|397aa|down_9|NZ_CP022423.1_2213618_2214809_+	pfam03787, RAMPs, RAMP superfamily
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	8	2206104-2206739	8,4,7	CRISPRCasFinder,CRT,PILER-CR	no	csx16,csx1,cas1,cas2,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Type III-A,Type III-D,Type III-B,Type III-C	GTCTTAATCCCCTTCAGAAACCGGGGAGCTTGAAC,GTCTTAATCCCCTTCAGAAACCGGGGAGCTTGAAC,GTCTTAATCCCCTTCAGAAACCGGGGAGCTTGAAC	35,35,35	0	0	NA	NA	NA:NA:NA	9,9,8	9	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|683aa|up_9|NZ_CP022423.1_2196276_2198325_+,NA|232aa|up_8|NZ_CP022423.1_2198371_2199067_+,NA|136aa|up_7|NZ_CP022423.1_2199138_2199546_+,NA|102aa|up_6|NZ_CP022423.1_2199615_2199921_-,NA|272aa|up_3|NZ_CP022423.1_2203502_2204318_+,NA|70aa|up_2|NZ_CP022423.1_2204390_2204600_+,cas6|336aa|down_3|NZ_CP022423.1_2212614_2213622_+	NA|683aa|up_9|NZ_CP022423.1_2196276_2198325_+	NA	NA|232aa|up_8|NZ_CP022423.1_2198371_2199067_+	NA	NA|136aa|up_7|NZ_CP022423.1_2199138_2199546_+	NA	NA|102aa|up_6|NZ_CP022423.1_2199615_2199921_-	NA	NA|139aa|up_5|NZ_CP022423.1_2199987_2200404_-	pfam18673, IrmA, interleukin receptor mimic protein A	csx1|400aa|up_4|NZ_CP022423.1_2202141_2203341_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|272aa|up_3|NZ_CP022423.1_2203502_2204318_+	NA	NA|70aa|up_2|NZ_CP022423.1_2204390_2204600_+	NA	NA|337aa|up_1|NZ_CP022423.1_2204611_2205622_+	pfam02956, TT_ORF1, TT viral orf 1	csx1|167aa|up_0|NZ_CP022423.1_2205543_2206044_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	cas1|680aa|down_0|NZ_CP022423.1_2206955_2208995_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas2|94aa|down_1|NZ_CP022423.1_2209005_2209287_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx1|399aa|down_2|NZ_CP022423.1_2211421_2212618_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas6|336aa|down_3|NZ_CP022423.1_2212614_2213622_+	NA	cmr1gr7|397aa|down_4|NZ_CP022423.1_2213618_2214809_+	pfam03787, RAMPs, RAMP superfamily	cas10|696aa|down_5|NZ_CP022423.1_2214805_2216893_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|386aa|down_6|NZ_CP022423.1_2216997_2218155_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr4gr7|299aa|down_7|NZ_CP022423.1_2218206_2219103_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|123aa|down_8|NZ_CP022423.1_2219107_2219476_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|408aa|down_9|NZ_CP022423.1_2219493_2220717_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	9	2209575-2211068	9,5,8	CRISPRCasFinder,CRT,PILER-CR	no	csx16,csx1,cas1,cas2,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Type III-A,Type III-D,Type III-B,Type III-C	GTCTTAATCCCCTTCAGAAACCGGGGAGTGTGAAC,GTCTTAATCCCCTTCAGAAACCGGGGAGTGTGAAC,GTCTTAATCCCCTTCAGAAACCGGGGAGTGTGAAC	35,35,35	0	0	NA	NA	NA:NA:NA	22,22,21	22	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|136aa|up_9|NZ_CP022423.1_2199138_2199546_+,NA|102aa|up_8|NZ_CP022423.1_2199615_2199921_-,NA|272aa|up_5|NZ_CP022423.1_2203502_2204318_+,NA|70aa|up_4|NZ_CP022423.1_2204390_2204600_+,cas6|336aa|down_1|NZ_CP022423.1_2212614_2213622_+,NA|281aa|down_9|NZ_CP022423.1_2222402_2223245_+	NA|136aa|up_9|NZ_CP022423.1_2199138_2199546_+	NA	NA|102aa|up_8|NZ_CP022423.1_2199615_2199921_-	NA	NA|139aa|up_7|NZ_CP022423.1_2199987_2200404_-	pfam18673, IrmA, interleukin receptor mimic protein A	csx1|400aa|up_6|NZ_CP022423.1_2202141_2203341_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|272aa|up_5|NZ_CP022423.1_2203502_2204318_+	NA	NA|70aa|up_4|NZ_CP022423.1_2204390_2204600_+	NA	NA|337aa|up_3|NZ_CP022423.1_2204611_2205622_+	pfam02956, TT_ORF1, TT viral orf 1	csx1|167aa|up_2|NZ_CP022423.1_2205543_2206044_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	cas1|680aa|up_1|NZ_CP022423.1_2206955_2208995_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas2|94aa|up_0|NZ_CP022423.1_2209005_2209287_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx1|399aa|down_0|NZ_CP022423.1_2211421_2212618_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas6|336aa|down_1|NZ_CP022423.1_2212614_2213622_+	NA	cmr1gr7|397aa|down_2|NZ_CP022423.1_2213618_2214809_+	pfam03787, RAMPs, RAMP superfamily	cas10|696aa|down_3|NZ_CP022423.1_2214805_2216893_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|386aa|down_4|NZ_CP022423.1_2216997_2218155_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr4gr7|299aa|down_5|NZ_CP022423.1_2218206_2219103_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|123aa|down_6|NZ_CP022423.1_2219107_2219476_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|408aa|down_7|NZ_CP022423.1_2219493_2220717_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	NA|531aa|down_8|NZ_CP022423.1_2220742_2222335_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|281aa|down_9|NZ_CP022423.1_2222402_2223245_+	NA
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	10	2223400-2223778	6,9,10	CRT,PILER-CR,CRISPRCasFinder	no	csx1,cas1,cas2,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Type III-A,Type III-D,Type III-B,Type III-C	GTCTTAATCCCTTCAAAGCCAGGGAAGTCAGTCAGAC,GTCTGACTGACTTCCCTGGCTTTGAAGGGATTAAGAC,TAATCCCTTCAAAGCCAGGGAAGTCAGTCAGAC	37,37,33	1	1	2223641-2223676	NZ_CP022423.1_1856187-1856222	NA:NA:NA	5,5,5	5	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas6|336aa|up_8|NZ_CP022423.1_2212614_2213622_+,NA|281aa|up_0|NZ_CP022423.1_2222402_2223245_+,NA|185aa|down_5|NZ_CP022423.1_2230542_2231097_+	csx1|399aa|up_9|NZ_CP022423.1_2211421_2212618_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas6|336aa|up_8|NZ_CP022423.1_2212614_2213622_+	NA	cmr1gr7|397aa|up_7|NZ_CP022423.1_2213618_2214809_+	pfam03787, RAMPs, RAMP superfamily	cas10|696aa|up_6|NZ_CP022423.1_2214805_2216893_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|386aa|up_5|NZ_CP022423.1_2216997_2218155_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr4gr7|299aa|up_4|NZ_CP022423.1_2218206_2219103_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|123aa|up_3|NZ_CP022423.1_2219107_2219476_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|408aa|up_2|NZ_CP022423.1_2219493_2220717_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	NA|531aa|up_1|NZ_CP022423.1_2220742_2222335_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|281aa|up_0|NZ_CP022423.1_2222402_2223245_+	NA	cas6|312aa|down_0|NZ_CP022423.1_2224179_2225115_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas10|553aa|down_1|NZ_CP022423.1_2225111_2226770_+	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms]	csm3gr7|208aa|down_2|NZ_CP022423.1_2226766_2227390_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx10gr5|555aa|down_3|NZ_CP022423.1_2227386_2229051_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|501aa|down_4|NZ_CP022423.1_2229047_2230550_+	pfam03787, RAMPs, RAMP superfamily	NA|185aa|down_5|NZ_CP022423.1_2230542_2231097_+	NA	csm3gr7|597aa|down_6|NZ_CP022423.1_2231116_2232907_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx1|378aa|down_7|NZ_CP022423.1_2232935_2234069_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|587aa|down_8|NZ_CP022423.1_2234222_2235983_+	TIGR04486, Sulfur_oxidation_protein_SoxB, thiosulfohydrolase SoxB	cas2|96aa|down_9|NZ_CP022423.1_2238579_2238867_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	11	2236069-2238445	7,11,10	CRT,CRISPRCasFinder,PILER-CR	no	cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas6,cas10,csm3gr7,csx10gr5,csx1,cas2,cas1	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Type III-A,Type III-D,Type III-B,Type III-C	GTCTTAATCCCTTCAAAGCCAGGGAAGCCAGCCAGAC,GTCTTAATCCCTTCAAAGCCAGGGAAGCCAGCCAGAC,CTGGCTGGCTTCCCTGGCTTTGAAGGGATTAAGAC	37,37,35	0	0	NA	NA	NA:NA:NA	34,33,11	34	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|281aa|up_9|NZ_CP022423.1_2222402_2223245_+,NA|185aa|up_3|NZ_CP022423.1_2230542_2231097_+,NA	NA|281aa|up_9|NZ_CP022423.1_2222402_2223245_+	NA	cas6|312aa|up_8|NZ_CP022423.1_2224179_2225115_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas10|553aa|up_7|NZ_CP022423.1_2225111_2226770_+	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms]	csm3gr7|208aa|up_6|NZ_CP022423.1_2226766_2227390_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx10gr5|555aa|up_5|NZ_CP022423.1_2227386_2229051_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|501aa|up_4|NZ_CP022423.1_2229047_2230550_+	pfam03787, RAMPs, RAMP superfamily	NA|185aa|up_3|NZ_CP022423.1_2230542_2231097_+	NA	csm3gr7|597aa|up_2|NZ_CP022423.1_2231116_2232907_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx1|378aa|up_1|NZ_CP022423.1_2232935_2234069_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|587aa|up_0|NZ_CP022423.1_2234222_2235983_+	TIGR04486, Sulfur_oxidation_protein_SoxB, thiosulfohydrolase SoxB	cas2|96aa|down_0|NZ_CP022423.1_2238579_2238867_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|331aa|down_1|NZ_CP022423.1_2238879_2239872_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|100aa|down_2|NZ_CP022423.1_2239890_2240190_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|1237aa|down_3|NZ_CP022423.1_2240330_2244041_+	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit	NA|1247aa|down_4|NZ_CP022423.1_2244037_2247778_+	PRK10876, recB, exonuclease V subunit beta; Provisional	NA|680aa|down_5|NZ_CP022423.1_2247774_2249814_+	PRK10875, recD, exodeoxyribonuclease V subunit alpha	NA|243aa|down_6|NZ_CP022423.1_2249810_2250539_+	PRK11460, PRK11460, putative hydrolase; Provisional	NA|260aa|down_7|NZ_CP022423.1_2250556_2251336_+	PRK02101, PRK02101, peroxide stress protein YaaA	NA|445aa|down_8|NZ_CP022423.1_2251583_2252918_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|110aa|down_9|NZ_CP022423.1_2252835_2253165_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	12	2498811-2502595	11,12,8	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Type I-U,Type I-C, Type I-U?	ATTTCACCCGCTGGGATGGCGGGTGTGGATTGAAAC,ATTTCACCCGCTGGGATGGCGGGTGTGGATTGAAAC,ATTTCACCCGCTGGGATGGCGGGTGTGGATTGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	53,53,53	53	TypeI-U,TypeI-C,TypeI-U?	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|238aa|down_5|NZ_CP022423.1_2508364_2509078_+	NA|642aa|up_9|NZ_CP022423.1_2484471_2486397_-	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|189aa|up_8|NZ_CP022423.1_2487554_2488121_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|670aa|up_7|NZ_CP022423.1_2488168_2490178_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	cas3|849aa|up_6|NZ_CP022423.1_2490310_2492857_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|253aa|up_5|NZ_CP022423.1_2492849_2493608_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|633aa|up_4|NZ_CP022423.1_2493609_2495508_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|297aa|up_3|NZ_CP022423.1_2495523_2496414_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|215aa|up_2|NZ_CP022423.1_2496464_2497109_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|350aa|up_1|NZ_CP022423.1_2497117_2498167_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP022423.1_2498177_2498468_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|369aa|down_0|NZ_CP022423.1_2502662_2503769_+	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP	NA|185aa|down_1|NZ_CP022423.1_2503856_2504411_+	PRK00529, PRK00529, elongation factor P; Validated	NA|671aa|down_2|NZ_CP022423.1_2504469_2506482_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|223aa|down_3|NZ_CP022423.1_2506494_2507163_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|347aa|down_4|NZ_CP022423.1_2507231_2508272_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|238aa|down_5|NZ_CP022423.1_2508364_2509078_+	NA	NA|457aa|down_6|NZ_CP022423.1_2509057_2510428_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|499aa|down_7|NZ_CP022423.1_2510439_2511936_-	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit	NA|317aa|down_8|NZ_CP022423.1_2511946_2512897_-	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion]	NA|471aa|down_9|NZ_CP022423.1_2513063_2514476_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_002222655.1_ASM222265v1	NZ_CP022423	Vitreoscilla filiformis strain ATCC 15551 chromosome, complete genome	13	2925908-2925998	13	CRISPRCasFinder	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL	Orphan	GCTTCGACCGCGCTTGTGTGGTGGATGCGT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|121aa|up_8|NZ_CP022423.1_2915936_2916299_+,NA|168aa|up_6|NZ_CP022423.1_2916616_2917120_+,NA|89aa|down_0|NZ_CP022423.1_2926300_2926567_+	NA|412aa|up_9|NZ_CP022423.1_2914704_2915940_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|121aa|up_8|NZ_CP022423.1_2915936_2916299_+	NA	NA|106aa|up_7|NZ_CP022423.1_2916271_2916589_-	pfam10084, DUF2322, Uncharacterized protein conserved in bacteria (DUF2322)	NA|168aa|up_6|NZ_CP022423.1_2916616_2917120_+	NA	NA|1515aa|up_5|NZ_CP022423.1_2917191_2921736_+	pfam18741, MTES_1575, REase_MTES_1575	NA|495aa|up_4|NZ_CP022423.1_2921988_2923473_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|129aa|up_3|NZ_CP022423.1_2923484_2923871_+	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains	NA|109aa|up_2|NZ_CP022423.1_2923854_2924181_+	pfam01627, Hpt, Hpt domain	NA|113aa|up_1|NZ_CP022423.1_2924268_2924607_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|276aa|up_0|NZ_CP022423.1_2924625_2925453_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|89aa|down_0|NZ_CP022423.1_2926300_2926567_+	NA	NA|237aa|down_1|NZ_CP022423.1_2926563_2927274_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_2|NZ_CP022423.1_2927278_2928496_-	cd06335, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|231aa|down_3|NZ_CP022423.1_2928683_2929376_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|574aa|down_4|NZ_CP022423.1_2929396_2931118_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|321aa|down_5|NZ_CP022423.1_2931112_2932075_+	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|25aa|down_6|NZ_CP022423.1_2932205_2932280_+	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA	NA|305aa|down_7|NZ_CP022423.1_2932360_2933275_+	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	NA|243aa|down_8|NZ_CP022423.1_2933429_2934158_+	PRK05157, PRK05157, pyrroloquinoline quinone biosynthesis protein PqqC; Provisional	NA|89aa|down_9|NZ_CP022423.1_2934157_2934424_+	PRK02079, PRK02079, pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
GCF_002222655.1_ASM222265v1	NZ_CP022424	Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence	1	245123-252831	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	ATTCACTGCCGGGTAGGCAGCTTAGAAA,ATTCACTGCCGGGTAGGCAGCTTAGAAA,ATTCACTGCCGGGTAGGCAGCTTAGAAA,ATTCACTGCCGGGTAGGCAGCTTAGAAA	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	74,128,128,74	128	TypeI-F	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,csx16,csx1,cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm3gr7,csx10gr5,cas8c,cas4,DinG,PD-DExK,WYL,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|84aa|up_6|NZ_CP022424.1_239474_239726_+,NA|178aa|down_8|NZ_CP022424.1_272455_272989_-	NA|214aa|up_9|NZ_CP022424.1_234074_234716_+	TIGR02161, Cytochrome_c-type_protein_NapC, periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family	cas1|337aa|up_8|NZ_CP022424.1_234852_235863_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1182aa|up_7|NZ_CP022424.1_235859_239405_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|84aa|up_6|NZ_CP022424.1_239474_239726_+	NA	NA|133aa|up_5|NZ_CP022424.1_239731_240130_+	cd18745, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|67aa|up_4|NZ_CP022424.1_240308_240509_+	pfam13744, HTH_37, Helix-turn-helix domain	cas8f|430aa|up_3|NZ_CP022424.1_240983_242273_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|351aa|up_2|NZ_CP022424.1_242274_243327_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|347aa|up_1|NZ_CP022424.1_243346_244387_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|198aa|up_0|NZ_CP022424.1_244391_244985_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|283aa|down_0|NZ_CP022424.1_252961_253810_-	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|793aa|down_1|NZ_CP022424.1_253877_256256_+	pfam01804, Penicil_amidase, Penicillin amidase	NA|1006aa|down_2|NZ_CP022424.1_256252_259270_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|651aa|down_3|NZ_CP022424.1_259294_261247_+	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion]	NA|2642aa|down_4|NZ_CP022424.1_261333_269259_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|560aa|down_5|NZ_CP022424.1_269434_271114_-	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]	NA|209aa|down_6|NZ_CP022424.1_271139_271766_-	pfam07290, DUF1449, Protein of unknown function (DUF1449)	NA|230aa|down_7|NZ_CP022424.1_271762_272452_-	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	NA|178aa|down_8|NZ_CP022424.1_272455_272989_-	NA	NA|353aa|down_9|NZ_CP022424.1_273205_274264_+	cd13665, PBP2_TRAP_Dctp3_4, Periplasmic substrate-binding component of TRAP-type C4-dicarboxylate transport system DctP3 and DctP4; the type 2 periplasmic-binding protein fold
