assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002224525.1_ASM222452v1	NZ_CP013004	Xanthomonas citri pv. malvacearum strain XcmH1005 chromosome, complete genome	1	41154-41452	1,1	PILER-CR,CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	TGGAAACGGTCAACGGC,TGGAAACGGTCAATGGCAGCATC	17,23	0	0	NA	NA	NA:NA	3,5	5	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA,NA|179aa|down_6|NZ_CP013004.1_50937_51474_+,NA|361aa|down_7|NZ_CP013004.1_51500_52583_+	NA|368aa|up_9|NZ_CP013004.1_26599_27702_+	pfam00665, rve, Integrase core domain	NA|162aa|up_8|NZ_CP013004.1_28382_28868_-	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms]	NA|363aa|up_7|NZ_CP013004.1_29987_31075_-	pfam00665, rve, Integrase core domain	NA|162aa|up_6|NZ_CP013004.1_32016_32502_+	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|150aa|up_5|NZ_CP013004.1_32502_32952_+	pfam08808, RES, RES domain	NA|489aa|up_4|NZ_CP013004.1_32975_34442_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|231aa|up_3|NZ_CP013004.1_35769_36462_+	pfam01694, Rhomboid, Rhomboid family	NA|107aa|up_2|NZ_CP013004.1_36570_36891_+	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|509aa|up_1|NZ_CP013004.1_38005_39532_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|433aa|up_0|NZ_CP013004.1_39636_40935_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|599aa|down_0|NZ_CP013004.1_41866_43663_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|148aa|down_1|NZ_CP013004.1_43974_44418_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|378aa|down_2|NZ_CP013004.1_44712_45846_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|351aa|down_3|NZ_CP013004.1_46484_47537_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|358aa|down_4|NZ_CP013004.1_48304_49378_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|353aa|down_5|NZ_CP013004.1_49685_50744_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|179aa|down_6|NZ_CP013004.1_50937_51474_+	NA	NA|361aa|down_7|NZ_CP013004.1_51500_52583_+	NA	NA|494aa|down_8|NZ_CP013004.1_52595_54077_-	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial	NA|1491aa|down_9|NZ_CP013004.1_54208_58681_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional
GCF_002224525.1_ASM222452v1	NZ_CP013004	Xanthomonas citri pv. malvacearum strain XcmH1005 chromosome, complete genome	2	353267-353349	2	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	GGTCTCCAACAGCGGCACCATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA|183aa|up_8|NZ_CP013004.1_336746_337295_+,NA|154aa|up_1|NZ_CP013004.1_350605_351067_+,NA|190aa|down_4|NZ_CP013004.1_366506_367076_-,NA|239aa|down_5|NZ_CP013004.1_367072_367789_-	NA|656aa|up_9|NZ_CP013004.1_334782_336750_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|183aa|up_8|NZ_CP013004.1_336746_337295_+	NA	NA|439aa|up_7|NZ_CP013004.1_337581_338898_+	TIGR03354, VI_FHA, type VI secretion system FHA domain protein	NA|445aa|up_6|NZ_CP013004.1_339477_340812_+	TIGR03353, VI_chp_4, type VI secretion protein, VC_A0114 family	NA|427aa|up_5|NZ_CP013004.1_340793_342074_+	PRK07033, PRK07033, DotU family type VI secretion system protein	NA|192aa|up_4|NZ_CP013004.1_345602_346178_+	TIGR03373, VI_minor_4, type VI secretion-associated protein, BMA_A0400 family	NA|239aa|up_3|NZ_CP013004.1_346174_346891_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|1238aa|up_2|NZ_CP013004.1_346895_350609_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|154aa|up_1|NZ_CP013004.1_350605_351067_+	NA	NA|559aa|up_0|NZ_CP013004.1_351063_352740_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|348aa|down_0|NZ_CP013004.1_359928_360972_+	TIGR03363, VI_chp_8, type VI secretion-associated protein, ImpA family	NA|97aa|down_1|NZ_CP013004.1_361281_361572_-	pfam11191, DUF2782, Protein of unknown function (DUF2782)	NA|935aa|down_2|NZ_CP013004.1_361648_364453_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|300aa|down_3|NZ_CP013004.1_365323_366223_-	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|190aa|down_4|NZ_CP013004.1_366506_367076_-	NA	NA|239aa|down_5|NZ_CP013004.1_367072_367789_-	NA	NA|790aa|down_6|NZ_CP013004.1_368182_370552_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|448aa|down_7|NZ_CP013004.1_371129_372473_+	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	NA|336aa|down_8|NZ_CP013004.1_373065_374073_-	TIGR04444, hypothetical_protein_ThecoDRAFT_3161, chorismatase, FkbO/Hyg5 family	NA|450aa|down_9|NZ_CP013004.1_374069_375419_-	NF033113, halo_ClmS, chloramphenicol-biosynthetic FADH2-dependent halogenase CmlS
GCF_002224525.1_ASM222452v1	NZ_CP013004	Xanthomonas citri pv. malvacearum strain XcmH1005 chromosome, complete genome	3	2912565-2912659	3	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	CTGGCCGAAATGGATGCCGACCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA|335aa|up_8|NZ_CP013004.1_2898907_2899912_-,NA|178aa|down_4|NZ_CP013004.1_2918918_2919452_+,NA|76aa|down_5|NZ_CP013004.1_2919518_2919746_-	NA|363aa|up_9|NZ_CP013004.1_2897376_2898464_-	pfam00665, rve, Integrase core domain	NA|335aa|up_8|NZ_CP013004.1_2898907_2899912_-	NA	NA|233aa|up_7|NZ_CP013004.1_2900644_2901343_-	pfam14022, DUF4238, Protein of unknown function (DUF4238)	NA|368aa|up_6|NZ_CP013004.1_2901434_2902537_+	pfam00665, rve, Integrase core domain	NA|210aa|up_5|NZ_CP013004.1_2902576_2903206_-	pfam13643, DUF4145, Domain of unknown function (DUF4145)	NA|364aa|up_4|NZ_CP013004.1_2903328_2904420_-	pfam13614, AAA_31, AAA domain	NA|1052aa|up_3|NZ_CP013004.1_2905120_2908276_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|247aa|up_2|NZ_CP013004.1_2909480_2910221_+	PRK09109, motC, flagellar motor protein; Reviewed	NA|325aa|up_1|NZ_CP013004.1_2910227_2911202_+	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed	NA|261aa|up_0|NZ_CP013004.1_2911203_2911986_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|103aa|down_0|NZ_CP013004.1_2913359_2913668_+	pfam13466, STAS_2, STAS domain	NA|122aa|down_1|NZ_CP013004.1_2913664_2914030_+	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|669aa|down_2|NZ_CP013004.1_2914063_2916070_+	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|764aa|down_3|NZ_CP013004.1_2916308_2918600_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|178aa|down_4|NZ_CP013004.1_2918918_2919452_+	NA	NA|76aa|down_5|NZ_CP013004.1_2919518_2919746_-	NA	NA|726aa|down_6|NZ_CP013004.1_2919982_2922160_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|930aa|down_7|NZ_CP013004.1_2922231_2925021_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|254aa|down_8|NZ_CP013004.1_2925318_2926080_+	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|791aa|down_9|NZ_CP013004.1_2926093_2928466_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_002224525.1_ASM222452v1	NZ_CP013004	Xanthomonas citri pv. malvacearum strain XcmH1005 chromosome, complete genome	4	4894104-4894288	4	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	GTGCAGGTGCGCCCCTCGGCCGAGCA	26	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA,NA|206aa|down_2|NZ_CP013004.1_4896636_4897254_-,NA|249aa|down_3|NZ_CP013004.1_4897356_4898103_-	NA|558aa|up_9|NZ_CP013004.1_4881696_4883370_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|215aa|up_8|NZ_CP013004.1_4883366_4884011_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|up_7|NZ_CP013004.1_4884204_4885308_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|53aa|up_6|NZ_CP013004.1_4885893_4886052_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|337aa|up_5|NZ_CP013004.1_4886116_4887127_-	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs	NA|554aa|up_4|NZ_CP013004.1_4887357_4889019_-	PRK09274, PRK09274, peptide synthase; Provisional	NA|128aa|up_3|NZ_CP013004.1_4889341_4889725_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|301aa|up_2|NZ_CP013004.1_4889877_4890780_-	PRK00870, PRK00870, haloalkane dehalogenase; Provisional	NA|339aa|up_1|NZ_CP013004.1_4892176_4893193_-	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|107aa|up_0|NZ_CP013004.1_4893294_4893615_-	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|159aa|down_0|NZ_CP013004.1_4894489_4894966_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|410aa|down_1|NZ_CP013004.1_4895314_4896544_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|206aa|down_2|NZ_CP013004.1_4896636_4897254_-	NA	NA|249aa|down_3|NZ_CP013004.1_4897356_4898103_-	NA	NA|481aa|down_4|NZ_CP013004.1_4899632_4901075_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|570aa|down_5|NZ_CP013004.1_4901124_4902834_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|199aa|down_6|NZ_CP013004.1_4903209_4903806_+	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|342aa|down_7|NZ_CP013004.1_4904270_4905296_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|171aa|down_8|NZ_CP013004.1_4905311_4905824_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|145aa|down_9|NZ_CP013004.1_4905933_4906368_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
GCF_002224525.1_ASM222452v1	NZ_CP013004	Xanthomonas citri pv. malvacearum strain XcmH1005 chromosome, complete genome	5	5168674-5168749	5	CRISPRCasFinder	no		cas3,DinG,WYL,DEDDh,csa3	Orphan	CGCGGCCAGGGCCGCTCCTACAGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,WYL,DEDDh,csa3	NA|133aa|up_9|NZ_CP013004.1_5145744_5146143_-,NA|144aa|up_8|NZ_CP013004.1_5146458_5146890_+,NA|111aa|up_3|NZ_CP013004.1_5158271_5158604_+,NA|60aa|up_2|NZ_CP013004.1_5160786_5160966_+,NA|80aa|down_1|NZ_CP013004.1_5172953_5173193_-,NA|127aa|down_8|NZ_CP013004.1_5177815_5178196_-	NA|133aa|up_9|NZ_CP013004.1_5145744_5146143_-	NA	NA|144aa|up_8|NZ_CP013004.1_5146458_5146890_+	NA	NA|354aa|up_7|NZ_CP013004.1_5147365_5148427_-	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|517aa|up_6|NZ_CP013004.1_5148625_5150176_+	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|1216aa|up_5|NZ_CP013004.1_5151025_5154673_-	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|600aa|up_4|NZ_CP013004.1_5154756_5156556_-	PRK08186, PRK08186, allophanate hydrolase; Provisional	NA|111aa|up_3|NZ_CP013004.1_5158271_5158604_+	NA	NA|60aa|up_2|NZ_CP013004.1_5160786_5160966_+	NA	NA|465aa|up_1|NZ_CP013004.1_5161068_5162463_-	cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases	NA|731aa|up_0|NZ_CP013004.1_5163031_5165224_-	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit	NA|1135aa|down_0|NZ_CP013004.1_5168999_5172404_-	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|80aa|down_1|NZ_CP013004.1_5172953_5173193_-	NA	NA|265aa|down_2|NZ_CP013004.1_5173575_5174370_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|250aa|down_3|NZ_CP013004.1_5174369_5175119_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|182aa|down_4|NZ_CP013004.1_5175130_5175676_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|221aa|down_5|NZ_CP013004.1_5175672_5176335_+	pfam05494, MlaC, MlaC protein	NA|97aa|down_6|NZ_CP013004.1_5176324_5176615_+	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]	NA|352aa|down_7|NZ_CP013004.1_5176625_5177681_+	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane]	NA|127aa|down_8|NZ_CP013004.1_5177815_5178196_-	NA	NA|182aa|down_9|NZ_CP013004.1_5178199_5178745_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate
