assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002237445.1_ASM223744v1	NZ_CP022527	Neisseria sp. KEM232 chromosome, complete genome	1	175428-177115	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	Type I-U, Type I-U?,Type I-C	GTTTCAACACTCAGCCGCCCGAAGGCGGCTGC,GTTTCAACACTCAGCCGCCCGAAGGCGGCTGC,GTTTCAACACTCAGCCGCCCGAAGGCGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	25,24,24	25	TypeI-U,TypeI-U?,TypeI-C	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	NA|48aa|up_4|NZ_CP022527.1_171938_172082_+,NA|152aa|up_1|NZ_CP022527.1_174250_174706_+,NA|181aa|up_0|NZ_CP022527.1_174769_175312_+,NA	NA|379aa|up_9|NZ_CP022527.1_164412_165549_+	pfam02253, PLA1, Phospholipase A1	NA|236aa|up_8|NZ_CP022527.1_165762_166470_+	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]	NA|163aa|up_7|NZ_CP022527.1_166612_167101_+	pfam08816, Ivy, Inhibitor of vertebrate lysozyme (Ivy)	NA|658aa|up_6|NZ_CP022527.1_167410_169384_-	pfam11992, DUF3488, Domain of unknown function (DUF3488)	NA|627aa|up_5|NZ_CP022527.1_169965_171846_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|48aa|up_4|NZ_CP022527.1_171938_172082_+	NA	NA|304aa|up_3|NZ_CP022527.1_172095_173007_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|314aa|up_2|NZ_CP022527.1_172990_173932_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|152aa|up_1|NZ_CP022527.1_174250_174706_+	NA	NA|181aa|up_0|NZ_CP022527.1_174769_175312_+	NA	cas2|98aa|down_0|NZ_CP022527.1_177304_177598_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP022527.1_177640_178654_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP022527.1_178998_179673_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas7|290aa|down_3|NZ_CP022527.1_179674_180544_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|684aa|down_4|NZ_CP022527.1_180572_182624_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|245aa|down_5|NZ_CP022527.1_182620_183355_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|828aa|down_6|NZ_CP022527.1_183372_185856_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|466aa|down_7|NZ_CP022527.1_186097_187495_+	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	NA|275aa|down_8|NZ_CP022527.1_187570_188395_+	pfam02517, Abi, CAAX protease self-immunity	NA|254aa|down_9|NZ_CP022527.1_188781_189543_+	PRK07478, PRK07478, short chain dehydrogenase; Provisional
GCF_002237445.1_ASM223744v1	NZ_CP022527	Neisseria sp. KEM232 chromosome, complete genome	2	915467-915614	2	PILER-CR	no		cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCAGACGGCCTCTTC	17	0	0	NA	NA	NA	2	2	Orphan	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	NA|96aa|up_8|NZ_CP022527.1_902990_903278_+,NA|89aa|down_3|NZ_CP022527.1_922842_923109_-,NA|287aa|down_9|NZ_CP022527.1_929149_930010_+	NA|140aa|up_9|NZ_CP022527.1_902451_902871_-	COG1981, COG1981, Predicted membrane protein [Function unknown]	NA|96aa|up_8|NZ_CP022527.1_902990_903278_+	NA	NA|114aa|up_7|NZ_CP022527.1_903528_903870_+	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|231aa|up_6|NZ_CP022527.1_903869_904562_+	pfam04172, LrgB, LrgB-like family	NA|768aa|up_5|NZ_CP022527.1_904689_906993_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|533aa|up_4|NZ_CP022527.1_907124_908723_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|574aa|up_3|NZ_CP022527.1_908709_910431_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|480aa|up_2|NZ_CP022527.1_910604_912044_+	pfam04575, DUF560, Protein of unknown function (DUF560)	NA|351aa|up_1|NZ_CP022527.1_912341_913394_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|528aa|up_0|NZ_CP022527.1_913845_915429_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|324aa|down_0|NZ_CP022527.1_918389_919361_-	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|779aa|down_1|NZ_CP022527.1_919357_921694_-	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]	NA|335aa|down_2|NZ_CP022527.1_921763_922768_+	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]	NA|89aa|down_3|NZ_CP022527.1_922842_923109_-	NA	NA|295aa|down_4|NZ_CP022527.1_923210_924095_-	PRK08905, PRK08905, lysophospholipid acyltransferase family protein	NA|423aa|down_5|NZ_CP022527.1_924258_925527_-	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	NA|228aa|down_6|NZ_CP022527.1_925898_926582_-	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|271aa|down_7|NZ_CP022527.1_926584_927397_-	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|520aa|down_8|NZ_CP022527.1_927465_929025_-	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|287aa|down_9|NZ_CP022527.1_929149_930010_+	NA
GCF_002237445.1_ASM223744v1	NZ_CP022527	Neisseria sp. KEM232 chromosome, complete genome	3	967628-967712	2	CRISPRCasFinder	no		cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCCGATGCGGCCGCTGTTGGCCA	24	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	NA|68aa|up_9|NZ_CP022527.1_952984_953188_-,NA|196aa|up_4|NZ_CP022527.1_956422_957010_+,NA|83aa|up_2|NZ_CP022527.1_957846_958095_-,NA|48aa|down_5|NZ_CP022527.1_976018_976162_+	NA|68aa|up_9|NZ_CP022527.1_952984_953188_-	NA	NA|92aa|up_8|NZ_CP022527.1_953348_953624_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|up_7|NZ_CP022527.1_953652_953961_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|325aa|up_6|NZ_CP022527.1_954181_955156_+	PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional	NA|311aa|up_5|NZ_CP022527.1_955444_956377_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|196aa|up_4|NZ_CP022527.1_956422_957010_+	NA	NA|144aa|up_3|NZ_CP022527.1_957198_957630_-	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|83aa|up_2|NZ_CP022527.1_957846_958095_-	NA	NA|100aa|up_1|NZ_CP022527.1_958091_958391_-	pfam14424, Toxin-deaminase, The BURPS668_1122 family of deaminases	NA|319aa|up_0|NZ_CP022527.1_959537_960494_-	pfam15575, Imm49, Immunity protein 49	NA|581aa|down_0|NZ_CP022527.1_969352_971095_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|95aa|down_1|NZ_CP022527.1_971530_971815_+	COG1534, COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]	NA|217aa|down_2|NZ_CP022527.1_972038_972689_+	pfam14300, DUF4375, Domain of unknown function (DUF4375)	NA|279aa|down_3|NZ_CP022527.1_972826_973663_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|649aa|down_4|NZ_CP022527.1_973924_975871_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|48aa|down_5|NZ_CP022527.1_976018_976162_+	NA	NA|216aa|down_6|NZ_CP022527.1_976290_976938_-	PRK10847, PRK10847, DedA family protein	NA|223aa|down_7|NZ_CP022527.1_977110_977779_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|226aa|down_8|NZ_CP022527.1_977775_978453_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|108aa|down_9|NZ_CP022527.1_978454_978778_+	pfam03091, CutA1, CutA1 divalent ion tolerance protein
GCF_002237445.1_ASM223744v1	NZ_CP022527	Neisseria sp. KEM232 chromosome, complete genome	4	967919-968005	3	CRISPRCasFinder	no		cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCCGATGCGGCCGCTGTTGGCCA	24	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	NA|68aa|up_9|NZ_CP022527.1_952984_953188_-,NA|196aa|up_4|NZ_CP022527.1_956422_957010_+,NA|83aa|up_2|NZ_CP022527.1_957846_958095_-,NA|48aa|down_5|NZ_CP022527.1_976018_976162_+	NA|68aa|up_9|NZ_CP022527.1_952984_953188_-	NA	NA|92aa|up_8|NZ_CP022527.1_953348_953624_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|up_7|NZ_CP022527.1_953652_953961_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|325aa|up_6|NZ_CP022527.1_954181_955156_+	PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional	NA|311aa|up_5|NZ_CP022527.1_955444_956377_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|196aa|up_4|NZ_CP022527.1_956422_957010_+	NA	NA|144aa|up_3|NZ_CP022527.1_957198_957630_-	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|83aa|up_2|NZ_CP022527.1_957846_958095_-	NA	NA|100aa|up_1|NZ_CP022527.1_958091_958391_-	pfam14424, Toxin-deaminase, The BURPS668_1122 family of deaminases	NA|319aa|up_0|NZ_CP022527.1_959537_960494_-	pfam15575, Imm49, Immunity protein 49	NA|581aa|down_0|NZ_CP022527.1_969352_971095_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|95aa|down_1|NZ_CP022527.1_971530_971815_+	COG1534, COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]	NA|217aa|down_2|NZ_CP022527.1_972038_972689_+	pfam14300, DUF4375, Domain of unknown function (DUF4375)	NA|279aa|down_3|NZ_CP022527.1_972826_973663_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|649aa|down_4|NZ_CP022527.1_973924_975871_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|48aa|down_5|NZ_CP022527.1_976018_976162_+	NA	NA|216aa|down_6|NZ_CP022527.1_976290_976938_-	PRK10847, PRK10847, DedA family protein	NA|223aa|down_7|NZ_CP022527.1_977110_977779_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|226aa|down_8|NZ_CP022527.1_977775_978453_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|108aa|down_9|NZ_CP022527.1_978454_978778_+	pfam03091, CutA1, CutA1 divalent ion tolerance protein
GCF_002237445.1_ASM223744v1	NZ_CP022527	Neisseria sp. KEM232 chromosome, complete genome	5	1241977-1242073	4	CRISPRCasFinder	no		cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	Orphan	GTAGGTTGGGTTGCAAACCCAACAAAATG	29	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	NA|62aa|up_9|NZ_CP022527.1_1232821_1233007_+,NA	NA|62aa|up_9|NZ_CP022527.1_1232821_1233007_+	NA	NA|432aa|up_8|NZ_CP022527.1_1233380_1234676_+	TIGR01959, NADH-quinone_oxidoreductase_subunit_F, NADH-quinone oxidoreductase, F subunit	NA|753aa|up_7|NZ_CP022527.1_1235124_1237383_+	PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated	NA|357aa|up_6|NZ_CP022527.1_1237386_1238457_+	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH	NA|132aa|up_5|NZ_CP022527.1_1238513_1238909_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|160aa|up_4|NZ_CP022527.1_1239007_1239487_+	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|186aa|up_3|NZ_CP022527.1_1239890_1240448_+	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|120aa|up_2|NZ_CP022527.1_1240534_1240894_+	pfam07110, EthD, EthD domain	NA|222aa|up_1|NZ_CP022527.1_1240967_1241633_+	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|102aa|up_0|NZ_CP022527.1_1241629_1241935_+	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|139aa|down_0|NZ_CP022527.1_1242284_1242701_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|677aa|down_1|NZ_CP022527.1_1243194_1245225_+	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|90aa|down_2|NZ_CP022527.1_1245590_1245860_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|217aa|down_3|NZ_CP022527.1_1246238_1246889_+	pfam18753, Nmad2, Nucleotide modification associated domain 2	NA|500aa|down_4|NZ_CP022527.1_1247002_1248502_+	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|482aa|down_5|NZ_CP022527.1_1248511_1249957_+	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|268aa|down_6|NZ_CP022527.1_1251398_1252202_-	cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)	NA|290aa|down_7|NZ_CP022527.1_1252258_1253128_-	pfam05661, DUF808, Protein of unknown function (DUF808)	NA|298aa|down_8|NZ_CP022527.1_1253236_1254130_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|219aa|down_9|NZ_CP022527.1_1254288_1254945_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]
GCF_002237445.1_ASM223744v1	NZ_CP022527	Neisseria sp. KEM232 chromosome, complete genome	6	1852962-1853122	3	PILER-CR	no		cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	Orphan	AGCCGCCCCGTTTGTTTTCAGACGGCCTCCGC	32	0	0	NA	NA	NA	2	2	Orphan	cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,DinG,csa3,WYL	NA,NA|96aa|down_6|NZ_CP022527.1_1860516_1860804_+,NA|59aa|down_8|NZ_CP022527.1_1861504_1861681_+	NA|185aa|up_9|NZ_CP022527.1_1842277_1842832_+	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional	NA|267aa|up_8|NZ_CP022527.1_1842913_1843714_-	PRK08999, PRK08999, Nudix family hydrolase	NA|336aa|up_7|NZ_CP022527.1_1844015_1845023_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|311aa|up_6|NZ_CP022527.1_1845037_1845970_+	PRK15447, PRK15447, putative protease; Provisional	NA|147aa|up_5|NZ_CP022527.1_1845956_1846397_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|841aa|up_4|NZ_CP022527.1_1846553_1849076_-	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]	NA|397aa|up_3|NZ_CP022527.1_1849199_1850390_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|274aa|up_2|NZ_CP022527.1_1850742_1851564_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|129aa|up_1|NZ_CP022527.1_1851749_1852136_+	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|253aa|up_0|NZ_CP022527.1_1852185_1852944_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|211aa|down_0|NZ_CP022527.1_1853272_1853905_+	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|301aa|down_1|NZ_CP022527.1_1854107_1855010_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|564aa|down_2|NZ_CP022527.1_1855144_1856836_-	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional	NA|661aa|down_3|NZ_CP022527.1_1856922_1858905_-	PRK12753, PRK12753, transketolase; Reviewed	NA|149aa|down_4|NZ_CP022527.1_1859044_1859491_-	COG3909, COG3909, Cytochrome c556 [Energy production and conversion]	NA|250aa|down_5|NZ_CP022527.1_1859577_1860327_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|96aa|down_6|NZ_CP022527.1_1860516_1860804_+	NA	NA|219aa|down_7|NZ_CP022527.1_1860868_1861525_-	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion]	NA|59aa|down_8|NZ_CP022527.1_1861504_1861681_+	NA	NA|212aa|down_9|NZ_CP022527.1_1861690_1862326_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
