The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	5891614	1736433	1815264	5891614	integrase,transposase	Tupanvirus(44.44%)	51	1734307:1734366	1786967:1789093
1734307:1734366	attL	TGTCAATGGCCAAGTTGAAGTATCCGCTGGTGGCCAGATGAAAGTATCCAGCCCGTGCGG	NA	NA	NA	NA
WP_046182709.1|1736433_1738899_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909842.1|1738895_1740119_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_145958864.1|1741231_1742179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042911242.1|1742182_1742425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157739664.1|1743990_1744431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089151531.1|1745042_1745303_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042911244.1|1745723_1746311_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_142383138.1|1746629_1747061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142383139.1|1747091_1747469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087139682.1|1747431_1748370_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_042911246.1|1748768_1751768_-	nocobactin polyketide synthase NbtC	NA	NA	NA	NA	NA
WP_042911247.1|1751764_1753066_-	polyketide synthase	NA	NA	NA	NA	NA
WP_042911248.1|1753062_1753797_-	thioesterase	NA	NA	NA	NA	NA
WP_087139839.1|1753793_1754267_-	acetyltransferase	NA	NA	NA	NA	NA
WP_042911250.1|1754452_1759441_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.7	1.5e-94
WP_087139684.1|1759422_1763901_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	23.6	3.1e-35
WP_042911252.1|1763924_1767377_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	23.6	4.6e-34
WP_080691156.1|1767377_1768766_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA	NA
WP_069953845.1|1769063_1770035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080691157.1|1771925_1775966_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	24.6	1.5e-41
WP_080691115.1|1776011_1777178_-	PLP-dependent cysteine synthase family protein	NA	A0A1W6JHY1	Lactococcus_phage	33.0	2.6e-34
WP_051445860.1|1778321_1779065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072501249.1|1779978_1780359_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
WP_042909842.1|1781213_1782437_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_046182709.1|1782433_1784899_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909843.1|1784895_1785183_+	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_069953761.1|1786147_1786960_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.1	3.8e-32
WP_089151532.1|1787930_1788302_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
WP_089151533.1|1788315_1789239_+	M56 family metallopeptidase	NA	NA	NA	NA	NA
1786967:1789093	attR	CCGCACGGGCTGGATACTTTCATCTGGCCACCAGCGGATACTTCAACTTGGCCATTGACAGCCGTCGCGGCGGCAGCCGCGAGGGCGCAGGTTCCCAGCGCGACTCGGCGTCGAAGATTGGTCGTCATTCCGTAACCCCTTTCCACAAAACGCAATTCAGCGGTCTCAGCAGGTTGAGAGATGACATACTCGCGGGCATGTCGTGGGCGAAGTTGACTTGATAGGGGTGACCCGCTCGGCTATCCGACCAACAGAGCAGTGGGTCAACGTGCGGGCGGCAGGGCCGAGAACCTGCCCACTGTTGGCCGCCGCACCTAGCGTCACATCGTGCAATGTGAGCGAGGTTTGGGACGCTCAAGACGATCTGATAGAGGCCTACGGTCCGTCCGCCGCAGCGGCGGTCGCTGTGAAAAGTGTGCGATCCGGGGTAACGACGTGGCGCGGCCGATCGCACCTGCCTGGCAGTCGTCGTCCTGGCGGCACACCTGTCAGATACATGGCTAGCGGGTGTCCGGGGTGGTCGCCAGCCAGGTATGAGCCTGTCTAGCAGCCACTTACAACTCCAAACCCTGGAAAGTAAGCTCGGTATCCCGCGCTGTGCGGTGTGTACGCAGCTGCTGTCCACGGCGCTTCCTTTGACGGCCGCGAAACCGGGCCGCCGTAACAACTACTATCTATGTACAGAGATAGTAGTTGCTGCGGAGGCGCCCCACAATCACGAATTGAAGCGCATCGGCACACCTGCGGTGCGATCGGCCAGCCGTGTGCTCATCGCTTTGGGAGAGGCCCGGCGCCCGGGCGCGGCGAGACGCCGGCAAGGTTGCGGCGAGTCGTTGTCCAATCGACGCACTCGGTCCACGTTTGCATTACTATCTACGTACGGAGAAAGTATCGCGATTCGGAGACCGGTGCGGCCCTGCCAGCGCGACAGACACCCGACACTGGTACCCGGGAGAGGTCCATAGTGCGGATACGAGGATTCGGAGAACTTGAGGCGGTCATCATGGACCGCATTTGGAACCGCGACCCGGCCGACGCGACCACAGTGCGCGAGGTCTTCGACGACCTTGCGGCCGAACGCACCATCGCGTACACGACGGTGATGTCCACGATGGACAACCTGCATACCAAGGGCTGGCTGCGGCGAGAACGCGATGGCAAGGCCTACCGGTATCGGCCCACCATGTCGCGCGAGCAGCACAGCGCCCGGCTCATGCGGGAGGCATTCGCCGGCGGCGGTCGTCCCGATCTGGTGCTTCATCATTTCGTCGAACAGATCGGCCCTGAGGAATCCGCACGCCTGCGTGCTGCGCTGCGACGGCGGCGGTCGAAATGAGAGCCGACCAGCGGTGAACATCGCTATTTGCCTGCTGTTGTACAGCCTGGCGATGCTGGTCGCCGGACCGCCGCTGTTGCGTGAGCTGACTCGGCATGGACATGCCCCCCGATTTGGGGTTGCCGCCTGGTTGACCGCTATCGCCACGGTGCTACTGACCTGGCTGCTAGCAGCGGGAATGACCCTTCTCGCGGTAGCCAGTCACTGGATCTACCCGCGAGCGCTGGTGGAATCCTGTCTGGTCCGGTTGCGCGGCGTGGTGGCCCCCAGCATCACGCTGGGAGTAATCGGCGCAATGGTCGCGCTGCTGGCCGCGGTCAGCAGCGTGCGCCTGGCTAGCACCGTTTCGCGGATGCGTGCCCGCGCGCGTGCGCACGCCGAGGCGGTGTGCATGGTCGGTCATCGCAACGGCGATGGATATGTGCTTGTGGATGCCGCCGAGCCCGCCGCGTACTGTGTCGCAGGCCGGCCCCCCGCGATCGTCGTGACCAGCGCTGCCCTTGCTGCACTCGATGAGAAGGAGTTGGCTGCGGTCCTCGCCCACGAACGGGCCCATCTGCATGGACGCCACTCGCTAGTGGTCACCACGCTACGCGGCCTTGCGGCGATACTTCCAAAGCTGACCCTGATGCGTGAGGGTGCCAGTGAGGTCTCACGCCTACTGGAGATGTGCGCCGATGACGCCTCGGCGCGCCGGCACGGCTCCGGCGTCTTGTTATCTGGACTGATCACCATGTGCCGCGCGACCCCGGCCGGGGCCCTTGCGGCAGCCGACGTGGCCGTGCTCGCCC	NA	NA	NA	NA
WP_087139686.1|1789381_1789645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154074414.1|1789780_1789930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139315491.1|1790133_1790409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082408970.1|1790708_1792103_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.4	2.2e-48
WP_080691120.1|1793235_1794636_-	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA	NA
WP_042910205.1|1794657_1796148_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_089151535.1|1796151_1797999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042910207.1|1797995_1798298_-	NADH-ubiquinone oxidoreductase	NA	NA	NA	NA	NA
WP_042910208.1|1798294_1798858_-	NADH:ubiquinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_042910209.1|1798861_1799797_-	NADH-quinone oxidoreductase subunit H	NA	NA	NA	NA	NA
WP_089151536.1|1799789_1800950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042910211.1|1800940_1801285_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_089151537.1|1802568_1803735_+	PLP-dependent cysteine synthase family protein	NA	A0A1W6JHY1	Lactococcus_phage	33.0	1.5e-34
WP_089151538.1|1806140_1806440_+	PE family protein	NA	NA	NA	NA	NA
WP_089151539.1|1806454_1807630_+	PPE family protein	NA	NA	NA	NA	NA
WP_042910215.1|1807728_1808025_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_042910216.1|1808033_1808318_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_089152393.1|1808586_1809381_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_072501503.1|1809749_1810772_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA	NA
WP_042910244.1|1811382_1811589_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_089151540.1|1811628_1813860_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.3	3.5e-88
WP_157739665.1|1813923_1815264_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	5891614	2370076	2405727	5891614	holin,transposase	Enterobacteria_phage(100.0%)	28	NA	NA
WP_008256156.1|2370076_2370415_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_008256158.1|2370418_2371093_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_008256160.1|2371725_2373246_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_014711299.1|2373865_2374678_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_041297812.1|2374674_2376228_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	27.8	1.1e-16
WP_008256161.1|2376501_2377047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008256163.1|2377119_2377329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014711465.1|2377481_2378960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014711466.1|2378956_2379535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008256168.1|2379534_2380020_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_008256169.1|2380414_2380849_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_008256170.1|2380852_2381101_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_036428816.1|2383396_2383975_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_008256175.1|2383971_2385108_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_008256177.1|2385104_2386574_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_073916456.1|2386768_2387332_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008256182.1|2387385_2387823_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_008256185.1|2387822_2388734_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014711468.1|2388787_2389405_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_036455212.1|2391683_2392463_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_020822357.1|2392414_2393023_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_036429555.1|2396361_2397447_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_014711472.1|2397474_2398350_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_079628783.1|2401649_2402456_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_074325745.1|2402489_2403395_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_095764245.1|2403576_2403876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020822362.1|2404375_2404675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020822364.1|2405427_2405727_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	5891614	4440382	4446958	5891614		Bacillus_phage(33.33%)	7	NA	NA
WP_042912786.1|4440382_4442548_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	3.3e-208
WP_008259183.1|4442517_4442970_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	40.2	5.8e-14
WP_008259184.1|4443001_4443241_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	63.2	1.3e-20
WP_008259185.1|4443769_4444324_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	34.4	1.2e-05
WP_008259186.1|4444415_4445030_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008259187.1|4445038_4446082_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	29.1	3.9e-21
WP_008259188.1|4446016_4446958_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	28.8	1.2e-05
>prophage 4
NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	5891614	5006455	5016494	5891614		Burkholderia_phage(57.14%)	9	NA	NA
WP_036453838.1|5006455_5007982_+	cyclic nucleotide-binding domain-containing protein	NA	W8CYF6	Bacillus_phage	37.4	1.3e-12
WP_036453840.1|5008021_5008870_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_036453842.1|5008890_5009757_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_008260499.1|5009784_5010780_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.5	5.8e-75
WP_036455274.1|5010781_5011399_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	38.8	1.6e-27
WP_036453844.1|5011639_5012764_+	acyltransferase	NA	A9YX16	Burkholderia_phage	28.6	1.4e-16
WP_036453846.1|5012908_5014045_+	acyltransferase	NA	A9YX16	Burkholderia_phage	30.5	2.3e-19
WP_036453848.1|5014140_5015307_+	acyltransferase	NA	A9YX16	Burkholderia_phage	25.4	1.0e-17
WP_036453849.1|5015405_5016494_+	acyltransferase	NA	A9YX16	Burkholderia_phage	29.7	6.1e-17
