assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002240155.1_ASM224015v1	NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	1	1387483-1387561	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	Orphan	TCCGCCGCGGAGGTCCGTGGGCGCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	NA,NA	NA|589aa|up_9|NZ_CP022223.1_1374168_1375935_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|186aa|up_8|NZ_CP022223.1_1376116_1376674_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|177aa|up_7|NZ_CP022223.1_1376682_1377213_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|168aa|up_6|NZ_CP022223.1_1377307_1377811_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|384aa|up_5|NZ_CP022223.1_1377975_1379127_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|874aa|up_4|NZ_CP022223.1_1379123_1381745_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|415aa|up_3|NZ_CP022223.1_1381840_1383085_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|545aa|up_2|NZ_CP022223.1_1383071_1384706_-	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|612aa|up_1|NZ_CP022223.1_1384740_1386576_-	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|303aa|up_0|NZ_CP022223.1_1386572_1387481_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|326aa|down_0|NZ_CP022223.1_1387603_1388581_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|164aa|down_1|NZ_CP022223.1_1388793_1389285_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|147aa|down_2|NZ_CP022223.1_1389363_1389804_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|310aa|down_3|NZ_CP022223.1_1389916_1390846_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|614aa|down_4|NZ_CP022223.1_1390845_1392687_+	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|162aa|down_5|NZ_CP022223.1_1392745_1393231_+	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|130aa|down_6|NZ_CP022223.1_1393248_1393638_-	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|138aa|down_7|NZ_CP022223.1_1393681_1394095_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|293aa|down_8|NZ_CP022223.1_1394161_1395040_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|289aa|down_9|NZ_CP022223.1_1395109_1395976_+	pfam13424, TPR_12, Tetratricopeptide repeat
GCF_002240155.1_ASM224015v1	NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	2	2371216-2371329	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	Orphan	GGTGTGATCGCGGCTTCGCCGCTCAACA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	NA,NA|182aa|down_3|NZ_CP022223.1_2376501_2377047_-,NA|70aa|down_4|NZ_CP022223.1_2377119_2377329_+,NA|493aa|down_5|NZ_CP022223.1_2377481_2378960_-,NA|193aa|down_6|NZ_CP022223.1_2378956_2379535_-	NA|493aa|up_9|NZ_CP022223.1_2362311_2363790_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|321aa|up_8|NZ_CP022223.1_2363789_2364752_+	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|386aa|up_7|NZ_CP022223.1_2365019_2366177_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|249aa|up_6|NZ_CP022223.1_2366228_2366975_+	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]	NA|259aa|up_5|NZ_CP022223.1_2366980_2367757_+	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|215aa|up_4|NZ_CP022223.1_2367823_2368468_+	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|97aa|up_3|NZ_CP022223.1_2368633_2368924_+	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|266aa|up_2|NZ_CP022223.1_2369186_2369984_+	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]	NA|113aa|up_1|NZ_CP022223.1_2370076_2370415_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|225aa|up_0|NZ_CP022223.1_2370418_2371093_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|507aa|down_0|NZ_CP022223.1_2371725_2373246_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|271aa|down_1|NZ_CP022223.1_2373865_2374678_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|518aa|down_2|NZ_CP022223.1_2374674_2376228_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|182aa|down_3|NZ_CP022223.1_2376501_2377047_-	NA	NA|70aa|down_4|NZ_CP022223.1_2377119_2377329_+	NA	NA|493aa|down_5|NZ_CP022223.1_2377481_2378960_-	NA	NA|193aa|down_6|NZ_CP022223.1_2378956_2379535_-	NA	NA|162aa|down_7|NZ_CP022223.1_2379534_2380020_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|145aa|down_8|NZ_CP022223.1_2380414_2380849_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|83aa|down_9|NZ_CP022223.1_2380852_2381101_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
GCF_002240155.1_ASM224015v1	NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	3	2997876-2997972	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	Orphan	GCGTTCGGGTCGACGGGCGGTGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	NA,NA|84aa|down_2|NZ_CP022223.1_3000291_3000543_+,NA|72aa|down_9|NZ_CP022223.1_3005495_3005711_+	NA|411aa|up_9|NZ_CP022223.1_2982838_2984071_+	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	NA|720aa|up_8|NZ_CP022223.1_2984044_2986204_-	PRK12320, PRK12320, hypothetical protein; Provisional	NA|495aa|up_7|NZ_CP022223.1_2986316_2987801_-	PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated	NA|801aa|up_6|NZ_CP022223.1_2987894_2990297_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|308aa|up_5|NZ_CP022223.1_2990509_2991433_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|283aa|up_4|NZ_CP022223.1_2991534_2992383_+	PRK07825, PRK07825, short chain dehydrogenase; Provisional	NA|788aa|up_3|NZ_CP022223.1_2992413_2994777_+	PRK05261, PRK05261, phosphoketolase	NA|253aa|up_2|NZ_CP022223.1_2994838_2995597_+	pfam02517, Abi, CAAX protease self-immunity	NA|343aa|up_1|NZ_CP022223.1_2995603_2996632_-	TIGR02822, putative_alcohol_dehydrogenase, zinc-binding alcohol dehydrogenase family protein	NA|100aa|up_0|NZ_CP022223.1_2996678_2996978_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|368aa|down_0|NZ_CP022223.1_2998392_2999496_-	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|255aa|down_1|NZ_CP022223.1_2999505_3000270_-	TIGR01581, Molybdenum_transport_system_permease_protein_modB	NA|84aa|down_2|NZ_CP022223.1_3000291_3000543_+	NA	NA|221aa|down_3|NZ_CP022223.1_3000532_3001195_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)	NA|259aa|down_4|NZ_CP022223.1_3001231_3002008_-	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold	NA|226aa|down_5|NZ_CP022223.1_3002195_3002873_+	PRK05884, PRK05884, SDR family oxidoreductase	NA|127aa|down_6|NZ_CP022223.1_3003085_3003466_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|462aa|down_7|NZ_CP022223.1_3003672_3005058_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|141aa|down_8|NZ_CP022223.1_3005108_3005531_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|72aa|down_9|NZ_CP022223.1_3005495_3005711_+	NA
GCF_002240155.1_ASM224015v1	NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	4	3784069-3784177	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	Orphan	GGGTTGCCGCTACTCGCCTCGGTGGGGTTGCCCTTACT	38	1	1	3784107-3784139	NZ_CP022223.1_3784179-3784211	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	NA|217aa|up_1|NZ_CP022223.1_3782336_3782987_-,NA|133aa|down_6|NZ_CP022223.1_3792173_3792572_+	NA|258aa|up_9|NZ_CP022223.1_3773666_3774440_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|395aa|up_8|NZ_CP022223.1_3774439_3775624_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|483aa|up_7|NZ_CP022223.1_3775623_3777072_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|271aa|up_6|NZ_CP022223.1_3777068_3777881_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|568aa|up_5|NZ_CP022223.1_3777938_3779642_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|303aa|up_4|NZ_CP022223.1_3779689_3780598_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|259aa|up_3|NZ_CP022223.1_3780594_3781371_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|up_2|NZ_CP022223.1_3781445_3782387_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|217aa|up_1|NZ_CP022223.1_3782336_3782987_-	NA	NA|325aa|up_0|NZ_CP022223.1_3783006_3783981_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|309aa|down_0|NZ_CP022223.1_3784355_3785282_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|700aa|down_1|NZ_CP022223.1_3785537_3787637_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|374aa|down_2|NZ_CP022223.1_3787653_3788775_+	PRK03343, PRK03343, transaldolase; Validated	NA|515aa|down_3|NZ_CP022223.1_3788771_3790316_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|304aa|down_4|NZ_CP022223.1_3790464_3791376_+	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|252aa|down_5|NZ_CP022223.1_3791372_3792128_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|133aa|down_6|NZ_CP022223.1_3792173_3792572_+	NA	NA|310aa|down_7|NZ_CP022223.1_3792584_3793514_+	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|330aa|down_8|NZ_CP022223.1_3793528_3794518_-	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR)	NA|939aa|down_9|NZ_CP022223.1_3794648_3797465_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed
GCF_002240155.1_ASM224015v1	NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	5	3790355-3790470	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	Orphan	GCGGGGGACGCAGCGATGAGGAGGAGTGGCGCAATTGATA	40	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	NA|217aa|up_5|NZ_CP022223.1_3782336_3782987_-,NA|133aa|down_1|NZ_CP022223.1_3792173_3792572_+	NA|568aa|up_9|NZ_CP022223.1_3777938_3779642_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|303aa|up_8|NZ_CP022223.1_3779689_3780598_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|259aa|up_7|NZ_CP022223.1_3780594_3781371_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|up_6|NZ_CP022223.1_3781445_3782387_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|217aa|up_5|NZ_CP022223.1_3782336_3782987_-	NA	NA|325aa|up_4|NZ_CP022223.1_3783006_3783981_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|309aa|up_3|NZ_CP022223.1_3784355_3785282_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|700aa|up_2|NZ_CP022223.1_3785537_3787637_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|374aa|up_1|NZ_CP022223.1_3787653_3788775_+	PRK03343, PRK03343, transaldolase; Validated	NA|515aa|up_0|NZ_CP022223.1_3788771_3790316_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|252aa|down_0|NZ_CP022223.1_3791372_3792128_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|133aa|down_1|NZ_CP022223.1_3792173_3792572_+	NA	NA|310aa|down_2|NZ_CP022223.1_3792584_3793514_+	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|330aa|down_3|NZ_CP022223.1_3793528_3794518_-	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR)	NA|939aa|down_4|NZ_CP022223.1_3794648_3797465_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|78aa|down_5|NZ_CP022223.1_3797503_3797737_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|262aa|down_6|NZ_CP022223.1_3797767_3798553_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|412aa|down_7|NZ_CP022223.1_3798549_3799785_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|340aa|down_8|NZ_CP022223.1_3799788_3800808_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|477aa|down_9|NZ_CP022223.1_3800935_3802366_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_002240155.1_ASM224015v1	NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	6	3964523-3964691	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	Orphan	GGGGCGGGGCCGGCTGGCCCGGTGCGGGTTGGCCGCTGGGCCCGG	45	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	NA,NA|38aa|down_1|NZ_CP022223.1_3965678_3965792_-,NA|231aa|down_4|NZ_CP022223.1_3970884_3971577_-	NA|209aa|up_9|NZ_CP022223.1_3951089_3951716_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|480aa|up_8|NZ_CP022223.1_3951712_3953152_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|375aa|up_7|NZ_CP022223.1_3953167_3954292_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|421aa|up_6|NZ_CP022223.1_3954346_3955609_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|223aa|up_5|NZ_CP022223.1_3955612_3956281_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|310aa|up_4|NZ_CP022223.1_3956360_3957290_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|793aa|up_3|NZ_CP022223.1_3957302_3959681_-	TIGR00691, PppGpp_synthetase	NA|181aa|up_2|NZ_CP022223.1_3959725_3960268_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|549aa|up_1|NZ_CP022223.1_3960275_3961922_-	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|430aa|up_0|NZ_CP022223.1_3961984_3963274_-	PRK13022, secF, protein translocase subunit SecF	NA|109aa|down_0|NZ_CP022223.1_3965278_3965605_-	PRK05886, yajC, preprotein translocase subunit YajC; Validated	NA|38aa|down_1|NZ_CP022223.1_3965678_3965792_-	NA	NA|447aa|down_2|NZ_CP022223.1_3965816_3967157_+	PRK06058, PRK06058, 4-aminobutyrate--2-oxoglutarate transaminase	NA|1175aa|down_3|NZ_CP022223.1_3967296_3970821_+	cd17632, AFD_CAR-like, adenylation domain of carboxylic acid reductase (CAR)	NA|231aa|down_4|NZ_CP022223.1_3970884_3971577_-	NA	NA|129aa|down_5|NZ_CP022223.1_3971706_3972093_-	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|229aa|down_6|NZ_CP022223.1_3972191_3972878_-	PRK13822, PRK13822, conjugal transfer coupling protein TraG; Provisional	NA|352aa|down_7|NZ_CP022223.1_3972971_3974027_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|200aa|down_8|NZ_CP022223.1_3974023_3974623_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|185aa|down_9|NZ_CP022223.1_3974619_3975174_-	PRK00039, ruvC, Holliday junction resolvase; Reviewed
GCF_002240155.1_ASM224015v1	NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	7	4160512-4160608	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	Orphan	TGCCCGGCGTCGGCTGTGGCTCCGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	NA,NA|153aa|down_3|NZ_CP022223.1_4166713_4167172_-	NA|301aa|up_9|NZ_CP022223.1_4151018_4151921_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|251aa|up_8|NZ_CP022223.1_4152050_4152803_-	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed	NA|404aa|up_7|NZ_CP022223.1_4152852_4154064_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|245aa|up_6|NZ_CP022223.1_4154116_4154851_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|162aa|up_5|NZ_CP022223.1_4154950_4155436_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|267aa|up_4|NZ_CP022223.1_4155507_4156308_-	PRK01827, thyA, thymidylate synthase; Reviewed	NA|250aa|up_3|NZ_CP022223.1_4156350_4157100_+	pfam01738, DLH, Dienelactone hydrolase family	NA|371aa|up_2|NZ_CP022223.1_4157116_4158229_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|400aa|up_1|NZ_CP022223.1_4158225_4159425_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|261aa|up_0|NZ_CP022223.1_4159421_4160204_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|1079aa|down_0|NZ_CP022223.1_4160631_4163868_-	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|277aa|down_1|NZ_CP022223.1_4165438_4166269_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|154aa|down_2|NZ_CP022223.1_4166259_4166721_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|153aa|down_3|NZ_CP022223.1_4166713_4167172_-	NA	NA|246aa|down_4|NZ_CP022223.1_4167168_4167906_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|453aa|down_5|NZ_CP022223.1_4168010_4169369_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|361aa|down_6|NZ_CP022223.1_4169375_4170458_-	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|336aa|down_7|NZ_CP022223.1_4170454_4171462_-	cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)	NA|217aa|down_8|NZ_CP022223.1_4171583_4172234_+	TIGR03384, betaine_BetI, transcriptional repressor BetI	NA|310aa|down_9|NZ_CP022223.1_4172239_4173169_-	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster
GCF_002240155.1_ASM224015v1	NZ_CP022223	Mycobacterium chimaera strain SJ42 chromosome, complete genome	8	4716359-4716492	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	Orphan	GGGCGGTACCCCCGGCGCGGAATGCATCGTCGCCGGGCTAC	41	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,Cas9_archaeal	NA,NA|79aa|down_5|NZ_CP022223.1_4725377_4725614_+	NA|118aa|up_9|NZ_CP022223.1_4703478_4703832_-	cd20610, Nitro_FMN_reductase_child_20, nitroreductase family protein	NA|217aa|up_8|NZ_CP022223.1_4703851_4704502_-	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|315aa|up_7|NZ_CP022223.1_4704639_4705584_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|993aa|up_6|NZ_CP022223.1_4705587_4708566_-	PRK00068, PRK00068, hypothetical protein; Validated	NA|341aa|up_5|NZ_CP022223.1_4708639_4709662_-	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]	NA|453aa|up_4|NZ_CP022223.1_4709786_4711145_+	COG5282, COG5282, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_3|NZ_CP022223.1_4711180_4712047_+	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain	NA|448aa|up_2|NZ_CP022223.1_4712128_4713472_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|84aa|up_1|NZ_CP022223.1_4713481_4713733_-	pfam02467, Whib, Transcription factor WhiB	NA|707aa|up_0|NZ_CP022223.1_4714137_4716258_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|85aa|down_0|NZ_CP022223.1_4716503_4716758_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|311aa|down_1|NZ_CP022223.1_4716769_4717702_-	PRK00241, nudC, NAD(+) diphosphatase	NA|357aa|down_2|NZ_CP022223.1_4717701_4718772_-	pfam02254, TrkA_N, TrkA-N domain	NA|1116aa|down_3|NZ_CP022223.1_4718820_4722168_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|1042aa|down_4|NZ_CP022223.1_4722164_4725290_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|79aa|down_5|NZ_CP022223.1_4725377_4725614_+	NA	NA|262aa|down_6|NZ_CP022223.1_4725659_4726445_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|104aa|down_7|NZ_CP022223.1_4726447_4726759_+	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|285aa|down_8|NZ_CP022223.1_4726765_4727620_-	TIGR02569, conserved_hypothetical_protein, TIGR02569 family protein	NA|396aa|down_9|NZ_CP022223.1_4727655_4728843_-	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated
