assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002240295.1_ASM224029v1	NZ_CP014154	Klebsiella quasipneumoniae strain HKUOPA4 chromosome, complete genome	1	443036-443148	1	CRISPRCasFinder	no		DEDDh,RT,WYL,DinG,cas3,csa3	Orphan	ATGCGCCACCGGATCCTCAATGATCGT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,WYL,DinG,cas3,csa3	NA,NA	NA|312aa|up_9|NZ_CP014154.1_428331_429267_-	cd19967, PBP1_TmRBP-like, D-ribose ABC transporter substrate-binding protein such as Thermoanaerobacter tengcongensis ribose binding protein (ttRBP)	NA|507aa|up_8|NZ_CP014154.1_429426_430947_-	cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|317aa|up_7|NZ_CP014154.1_431294_432245_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|277aa|up_6|NZ_CP014154.1_432627_433458_+	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	NA|312aa|up_5|NZ_CP014154.1_433450_434386_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|210aa|up_4|NZ_CP014154.1_434422_435052_-	PRK10251, PRK10251, enterobactin synthase subunit EntD	NA|743aa|up_3|NZ_CP014154.1_435118_437347_-	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|403aa|up_2|NZ_CP014154.1_437606_438815_+	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional	NA|68aa|up_1|NZ_CP014154.1_438842_439046_+	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1294aa|up_0|NZ_CP014154.1_439056_442938_+	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|330aa|down_0|NZ_CP014154.1_443879_444869_-	PRK10440, PRK10440, iron-enterobactin ABC transporter permease	NA|336aa|down_1|NZ_CP014154.1_444868_445876_-	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease	NA|414aa|down_2|NZ_CP014154.1_445988_447230_+	PRK10489, PRK10489, enterobactin transporter EntS	NA|320aa|down_3|NZ_CP014154.1_447361_448321_-	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional	NA|392aa|down_4|NZ_CP014154.1_448509_449685_+	PRK15016, PRK15016, isochorismate synthase EntC; Provisional	NA|536aa|down_5|NZ_CP014154.1_449694_451302_+	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase	NA|284aa|down_6|NZ_CP014154.1_451315_452167_+	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|252aa|down_7|NZ_CP014154.1_452166_452922_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|138aa|down_8|NZ_CP014154.1_452922_453336_+	PRK10254, PRK10254, proofreading thioesterase EntH	NA|702aa|down_9|NZ_CP014154.1_453743_455849_+	PRK15015, PRK15015, carbon starvation protein CstA
GCF_002240295.1_ASM224029v1	NZ_CP014154	Klebsiella quasipneumoniae strain HKUOPA4 chromosome, complete genome	2	2505751-2505902	2	CRISPRCasFinder	no		DEDDh,RT,WYL,DinG,cas3,csa3	Orphan	GATTGCCCGGCGGCGCTGCGCTTGCCGGGCCTACGAAGGGGGCGAACC	48	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,WYL,DinG,cas3,csa3	NA,NA	NA|240aa|up_9|NZ_CP014154.1_2494164_2494884_-	PRK11697, PRK11697, two-component system response regulator BtsR	NA|563aa|up_8|NZ_CP014154.1_2494877_2496566_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|38aa|up_7|NZ_CP014154.1_2496795_2496909_+	PRK13681, PRK13681, protein YohO	NA|246aa|up_6|NZ_CP014154.1_2496883_2497621_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|316aa|up_5|NZ_CP014154.1_2497604_2498552_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|386aa|up_4|NZ_CP014154.1_2498544_2499702_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|306aa|up_3|NZ_CP014154.1_2499709_2500627_-	cd13616, PBP2_OsmF, Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|766aa|up_2|NZ_CP014154.1_2500763_2503061_-	PRK15098, PRK15098, beta-glucosidase BglX	NA|582aa|up_1|NZ_CP014154.1_2503255_2505001_+	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional	NA|185aa|up_0|NZ_CP014154.1_2505086_2505641_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|316aa|down_0|NZ_CP014154.1_2505963_2506911_-	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|196aa|down_1|NZ_CP014154.1_2507102_2507690_-	pfam06930, DUF1282, Protein of unknown function (DUF1282)	NA|190aa|down_2|NZ_CP014154.1_2507843_2508413_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|480aa|down_3|NZ_CP014154.1_2508446_2509886_-	PRK11459, PRK11459, multidrug resistance outer membrane protein MdtQ; Provisional	NA|245aa|down_4|NZ_CP014154.1_2510014_2510749_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|465aa|down_5|NZ_CP014154.1_2510782_2512177_-	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|621aa|down_6|NZ_CP014154.1_2512192_2514055_-	PRK09824, PRK09824, PTS system beta-glucoside-specific transporter subunits IIABC; Provisional	NA|278aa|down_7|NZ_CP014154.1_2514195_2515029_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|455aa|down_8|NZ_CP014154.1_2515184_2516549_-	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|311aa|down_9|NZ_CP014154.1_2516905_2517838_-	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC
GCF_002240295.1_ASM224029v1	NZ_CP014154	Klebsiella quasipneumoniae strain HKUOPA4 chromosome, complete genome	3	2737117-2737206	3	CRISPRCasFinder	no		DEDDh,RT,WYL,DinG,cas3,csa3	Orphan	CACGCAGATTCCATAACCGCACCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,WYL,DinG,cas3,csa3	NA|80aa|up_9|NZ_CP014154.1_2728652_2728892_-,NA	NA|80aa|up_9|NZ_CP014154.1_2728652_2728892_-	NA	NA|289aa|up_8|NZ_CP014154.1_2728888_2729755_-	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase	NA|433aa|up_7|NZ_CP014154.1_2729837_2731136_+	PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional	NA|132aa|up_6|NZ_CP014154.1_2731299_2731695_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|304aa|up_5|NZ_CP014154.1_2731691_2732603_-	PRK11761, cysM, cysteine synthase CysM	NA|365aa|up_4|NZ_CP014154.1_2732721_2733816_-	PRK10851, PRK10851, sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA|292aa|up_3|NZ_CP014154.1_2733805_2734681_-	PRK11602, cysW, sulfate/thiosulfate ABC transporter permease CysW	NA|278aa|up_2|NZ_CP014154.1_2734680_2735514_-	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT	NA|339aa|up_1|NZ_CP014154.1_2735513_2736530_-	PRK10852, PRK10852, thiosulfate ABC transporter substrate-binding protein CysP	NA|121aa|up_0|NZ_CP014154.1_2736730_2737093_+	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|300aa|down_0|NZ_CP014154.1_2737254_2738154_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|192aa|down_1|NZ_CP014154.1_2738248_2738824_-	PRK10718, PRK10718, RpoE-regulated lipoprotein; Provisional	NA|150aa|down_2|NZ_CP014154.1_2738885_2739335_-	pfam11143, DUF2919, Protein of unknown function (DUF2919)	NA|142aa|down_3|NZ_CP014154.1_2739321_2739747_-	PRK03624, PRK03624, putative acetyltransferase; Provisional	NA|291aa|down_4|NZ_CP014154.1_2739958_2740831_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|300aa|down_5|NZ_CP014154.1_2740830_2741730_+	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|760aa|down_6|NZ_CP014154.1_2741783_2744063_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|319aa|down_7|NZ_CP014154.1_2744357_2745314_+	PRK12346, PRK12346, transaldolase A; Provisional	NA|665aa|down_8|NZ_CP014154.1_2745330_2747325_+	PRK12753, PRK12753, transketolase; Reviewed	NA|349aa|down_9|NZ_CP014154.1_2747314_2748361_-	pfam06674, DUF1176, Protein of unknown function (DUF1176)
GCF_002240295.1_ASM224029v1	NZ_CP014154	Klebsiella quasipneumoniae strain HKUOPA4 chromosome, complete genome	4	3989570-3989681	4	CRISPRCasFinder	no	cas3	DEDDh,RT,WYL,DinG,cas3,csa3	Unclear	GTAGCCCTGCTAAGCGTAGCGCAAGCAGGGA	31	0	0	NA	NA	NA	1	1	Unclear	DEDDh,RT,WYL,DinG,cas3,csa3	NA,NA	NA|707aa|up_9|NZ_CP014154.1_3978183_3980304_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|230aa|up_8|NZ_CP014154.1_3980465_3981155_+	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	cas3|694aa|up_7|NZ_CP014154.1_3981160_3983242_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|337aa|up_6|NZ_CP014154.1_3983290_3984301_+	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]	NA|249aa|up_5|NZ_CP014154.1_3984451_3985198_+	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional	NA|143aa|up_4|NZ_CP014154.1_3985198_3985627_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|200aa|up_3|NZ_CP014154.1_3985739_3986339_+	pfam07305, DUF1454, Protein of unknown function (DUF1454)	NA|256aa|up_2|NZ_CP014154.1_3986448_3987216_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|435aa|up_1|NZ_CP014154.1_3987307_3988612_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|255aa|up_0|NZ_CP014154.1_3988676_3989441_-	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional	NA|330aa|down_0|NZ_CP014154.1_3989689_3990679_-	PRK10752, PRK10752, sulfate ABC transporter substrate-binding protein	NA|82aa|down_1|NZ_CP014154.1_3990831_3991077_-	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional	NA|284aa|down_2|NZ_CP014154.1_3991519_3992371_+	cd00333, MIP, Major intrinsic protein (MIP) superfamily	NA|504aa|down_3|NZ_CP014154.1_3992392_3993904_+	PRK00047, glpK, glycerol kinase GlpK	NA|401aa|down_4|NZ_CP014154.1_3994018_3995221_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|down_5|NZ_CP014154.1_3995505_3996897_+	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|572aa|down_6|NZ_CP014154.1_3997047_3998763_+	pfam05170, AsmA, AsmA family	NA|520aa|down_7|NZ_CP014154.1_3999014_4000574_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|460aa|down_8|NZ_CP014154.1_4000586_4001966_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|241aa|down_9|NZ_CP014154.1_4002720_4003443_-	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_002240295.1_ASM224029v1	NZ_CP014154	Klebsiella quasipneumoniae strain HKUOPA4 chromosome, complete genome	5	4598382-4598499	5	CRISPRCasFinder	no		DEDDh,RT,WYL,DinG,cas3,csa3	Orphan	CCGGATAGCGGCTGGCGCCTTATCCGGGCTAC	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,WYL,DinG,cas3,csa3	NA,NA	NA|76aa|up_9|NZ_CP014154.1_4590166_4590394_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|150aa|up_8|NZ_CP014154.1_4590435_4590885_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|225aa|up_7|NZ_CP014154.1_4590993_4591668_-	COG3061, OapA, Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]	NA|207aa|up_6|NZ_CP014154.1_4591887_4592508_+	PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional	NA|468aa|up_5|NZ_CP014154.1_4592813_4594217_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|221aa|up_4|NZ_CP014154.1_4594321_4594984_-	PRK10992, PRK10992, iron-sulfur cluster repair protein YtfE	NA|324aa|up_3|NZ_CP014154.1_4595066_4596038_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|275aa|up_2|NZ_CP014154.1_4596113_4596938_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|283aa|up_1|NZ_CP014154.1_4597016_4597865_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|124aa|up_0|NZ_CP014154.1_4597955_4598327_+	pfam01638, HxlR, HxlR-like helix-turn-helix	NA|648aa|down_0|NZ_CP014154.1_4598553_4600497_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|248aa|down_1|NZ_CP014154.1_4600688_4601432_+	PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional	NA|186aa|down_2|NZ_CP014154.1_4601421_4601979_-	COG3054, COG3054, Predicted transcriptional regulator [General function prediction only]	NA|69aa|down_3|NZ_CP014154.1_4602303_4602510_+	pfam06526, DUF1107, Protein of unknown function (DUF1107)	NA|291aa|down_4|NZ_CP014154.1_4602571_4603444_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|670aa|down_5|NZ_CP014154.1_4603474_4605484_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|411aa|down_6|NZ_CP014154.1_4605502_4606735_-	PRK09528, lacY, galactoside permease; Reviewed	NA|446aa|down_7|NZ_CP014154.1_4606935_4608273_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|213aa|down_8|NZ_CP014154.1_4608453_4609092_-	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA	NA|578aa|down_9|NZ_CP014154.1_4609301_4611035_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]
GCF_002240295.1_ASM224029v1	NZ_CP014154	Klebsiella quasipneumoniae strain HKUOPA4 chromosome, complete genome	6	4836448-4836557	6	CRISPRCasFinder	no		DEDDh,RT,WYL,DinG,cas3,csa3	Orphan	TAAAAAAGGCAACTTGCGTTGCCTTTTT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,WYL,DinG,cas3,csa3	NA,NA	NA|426aa|up_9|NZ_CP014154.1_4824908_4826186_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|up_8|NZ_CP014154.1_4826601_4827381_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|up_7|NZ_CP014154.1_4827490_4828813_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|up_6|NZ_CP014154.1_4828865_4830089_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|up_5|NZ_CP014154.1_4830192_4830912_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|339aa|up_4|NZ_CP014154.1_4831001_4832018_-	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|216aa|up_3|NZ_CP014154.1_4832017_4832665_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|324aa|up_2|NZ_CP014154.1_4832769_4833741_+	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|461aa|up_1|NZ_CP014154.1_4833750_4835133_+	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|411aa|up_0|NZ_CP014154.1_4835154_4836387_+	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|556aa|down_0|NZ_CP014154.1_4836562_4838230_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|646aa|down_1|NZ_CP014154.1_4838458_4840396_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|110aa|down_2|NZ_CP014154.1_4840484_4840814_+	PRK01381, PRK01381, trp operon repressor	NA|172aa|down_3|NZ_CP014154.1_4840800_4841316_-	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|216aa|down_4|NZ_CP014154.1_4841429_4842077_+	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|290aa|down_5|NZ_CP014154.1_4842073_4842943_-	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|158aa|down_6|NZ_CP014154.1_4843152_4843626_+	PRK10756, PRK10756, protein CreA	NA|230aa|down_7|NZ_CP014154.1_4843638_4844328_+	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|475aa|down_8|NZ_CP014154.1_4844327_4845752_+	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|452aa|down_9|NZ_CP014154.1_4845814_4847170_+	PRK11715, PRK11715, cell envelope integrity protein CreD
