assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002243365.1_ASM224336v1	NZ_CP022665	Rhizobium leguminosarum bv. viciae strain BIHB 1217 chromosome, complete genome	1	1188880-1188959	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,Cas9_archaeal,PD-DExK	Orphan	AAAACCGCTCACACTTTCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,Cas9_archaeal,PD-DExK,RT	NA,NA	NA|358aa|up_9|NZ_CP022665.1_1178542_1179616_+	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase	NA|423aa|up_8|NZ_CP022665.1_1179622_1180891_+	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism]	NA|492aa|up_7|NZ_CP022665.1_1180919_1182395_+	PRK06247, PRK06247, pyruvate kinase; Provisional	NA|508aa|up_6|NZ_CP022665.1_1182647_1184171_+	PRK06834, PRK06834, hypothetical protein; Provisional	NA|203aa|up_5|NZ_CP022665.1_1184329_1184938_+	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|134aa|up_4|NZ_CP022665.1_1184975_1185377_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|312aa|up_3|NZ_CP022665.1_1185660_1186596_+	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|84aa|up_2|NZ_CP022665.1_1186598_1186850_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|256aa|up_1|NZ_CP022665.1_1186939_1187707_+	cd05233, SDR_c, classical (c) SDRs	NA|308aa|up_0|NZ_CP022665.1_1187916_1188840_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|639aa|down_0|NZ_CP022665.1_1189062_1190979_+	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]	NA|646aa|down_1|NZ_CP022665.1_1191241_1193179_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|334aa|down_2|NZ_CP022665.1_1193398_1194400_-	pfam14415, DUF4424, Domain of unknown function (DUF4424)	NA|262aa|down_3|NZ_CP022665.1_1194493_1195279_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|417aa|down_4|NZ_CP022665.1_1195275_1196526_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|337aa|down_5|NZ_CP022665.1_1196528_1197539_+	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|252aa|down_6|NZ_CP022665.1_1197619_1198375_-	PRK06023, PRK06023, crotonase/enoyl-CoA hydratase family protein	NA|593aa|down_7|NZ_CP022665.1_1198384_1200163_-	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|332aa|down_8|NZ_CP022665.1_1200371_1201367_+	cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily	NA|162aa|down_9|NZ_CP022665.1_1201460_1201946_-	pfam07886, BA14K, BA14K-like protein
GCF_002243365.1_ASM224336v1	NZ_CP022665	Rhizobium leguminosarum bv. viciae strain BIHB 1217 chromosome, complete genome	2	1241034-1241121	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,Cas9_archaeal,PD-DExK	Orphan	TTTTACGCAATTCCGGACGGAAGACCGCGC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,Cas9_archaeal,PD-DExK,RT	NA|105aa|up_2|NZ_CP022665.1_1238712_1239027_-,NA|79aa|down_9|NZ_CP022665.1_1249299_1249536_+	NA|447aa|up_9|NZ_CP022665.1_1231686_1233027_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|259aa|up_8|NZ_CP022665.1_1233044_1233821_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|76aa|up_7|NZ_CP022665.1_1233827_1234055_-	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|339aa|up_6|NZ_CP022665.1_1234163_1235180_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|611aa|up_5|NZ_CP022665.1_1235313_1237146_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|304aa|up_4|NZ_CP022665.1_1237215_1238127_+	PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|184aa|up_3|NZ_CP022665.1_1238126_1238678_+	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|105aa|up_2|NZ_CP022665.1_1238712_1239027_-	NA	NA|173aa|up_1|NZ_CP022665.1_1239209_1239728_-	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional	NA|386aa|up_0|NZ_CP022665.1_1239867_1241025_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|230aa|down_0|NZ_CP022665.1_1241302_1241992_+	PRK00015, rnhB, ribonuclease HII; Validated	NA|164aa|down_1|NZ_CP022665.1_1242084_1242576_-	PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated	NA|208aa|down_2|NZ_CP022665.1_1242579_1243203_-	PRK09174, PRK09174, F0F1 ATP synthase subunit B	NA|76aa|down_3|NZ_CP022665.1_1243280_1243508_-	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated	NA|251aa|down_4|NZ_CP022665.1_1243575_1244328_-	COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production and conversion]	NA|113aa|down_5|NZ_CP022665.1_1244390_1244729_-	COG5336, COG5336, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|down_6|NZ_CP022665.1_1245000_1246212_-	COG3773, SleB, Cell wall hydrolyses involved in spore germination [Cell envelope biogenesis, outer membrane]	NA|633aa|down_7|NZ_CP022665.1_1246365_1248264_-	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|333aa|down_8|NZ_CP022665.1_1248282_1249281_-	cd12837, EcCorA-like_u1, uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily	NA|79aa|down_9|NZ_CP022665.1_1249299_1249536_+	NA
GCF_002243365.1_ASM224336v1	NZ_CP022665	Rhizobium leguminosarum bv. viciae strain BIHB 1217 chromosome, complete genome	3	1678963-1679036	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,Cas9_archaeal,PD-DExK	Orphan	GGAAAACCGCTTCACACTTTTCC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,Cas9_archaeal,PD-DExK,RT	NA|147aa|up_9|NZ_CP022665.1_1669160_1669601_+,NA|84aa|up_6|NZ_CP022665.1_1671461_1671713_+,NA|126aa|down_6|NZ_CP022665.1_1685774_1686152_+	NA|147aa|up_9|NZ_CP022665.1_1669160_1669601_+	NA	NA|192aa|up_8|NZ_CP022665.1_1669664_1670240_+	pfam13238, AAA_18, AAA domain	NA|282aa|up_7|NZ_CP022665.1_1670338_1671184_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|84aa|up_6|NZ_CP022665.1_1671461_1671713_+	NA	NA|126aa|up_5|NZ_CP022665.1_1671852_1672230_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|153aa|up_4|NZ_CP022665.1_1672356_1672815_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|666aa|up_3|NZ_CP022665.1_1672840_1674838_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|375aa|up_2|NZ_CP022665.1_1674956_1676081_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|300aa|up_1|NZ_CP022665.1_1676310_1677210_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|501aa|up_0|NZ_CP022665.1_1677437_1678940_+	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus	NA|340aa|down_0|NZ_CP022665.1_1679083_1680103_+	cd19161, AKR_AKR15A1, Microbacterium luteolum pyridoxal 4-dehydrogenase (PLD) and similar proteins	NA|149aa|down_1|NZ_CP022665.1_1680112_1680559_+	COG4154, FucU, Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism]	NA|330aa|down_2|NZ_CP022665.1_1680767_1681757_+	cd20008, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein such as CUT2	NA|518aa|down_3|NZ_CP022665.1_1681864_1683418_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|325aa|down_4|NZ_CP022665.1_1683445_1684420_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|340aa|down_5|NZ_CP022665.1_1684487_1685507_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|126aa|down_6|NZ_CP022665.1_1685774_1686152_+	NA	NA|368aa|down_7|NZ_CP022665.1_1686361_1687465_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|243aa|down_8|NZ_CP022665.1_1687767_1688496_-	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|416aa|down_9|NZ_CP022665.1_1688492_1689740_-	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_002243365.1_ASM224336v1	NZ_CP022669	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR4, complete sequence	1	136387-136494	1	CRISPRCasFinder	no		DEDDh	Orphan	CGTCTTTCCCCAGATCGCCAACGAAA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,Cas9_archaeal,PD-DExK,RT	NA|60aa|up_4|NZ_CP022669.1_132192_132372_+,NA|60aa|up_3|NZ_CP022669.1_133145_133325_-,NA|78aa|up_2|NZ_CP022669.1_133875_134109_+,NA|221aa|down_6|NZ_CP022669.1_147135_147798_+	NA|520aa|up_9|NZ_CP022669.1_126045_127605_-	TIGR01817, Nif-specific_regulatory_protein, Nif-specific regulatory protein	NA|99aa|up_8|NZ_CP022669.1_127800_128097_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|436aa|up_7|NZ_CP022669.1_128108_129416_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|379aa|up_6|NZ_CP022669.1_129402_130539_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|284aa|up_5|NZ_CP022669.1_130556_131408_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|60aa|up_4|NZ_CP022669.1_132192_132372_+	NA	NA|60aa|up_3|NZ_CP022669.1_133145_133325_-	NA	NA|78aa|up_2|NZ_CP022669.1_133875_134109_+	NA	NA|251aa|up_1|NZ_CP022669.1_134221_134973_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|212aa|up_0|NZ_CP022669.1_135410_136046_-	TIGR04517, hypothetical_protein_RLEG3_02865, radical SAM family RiPP maturation amino acid epimerase	NA|48aa|down_0|NZ_CP022669.1_136737_136881_-	cd02040, NifH, nitrogenase component II NifH	NA|409aa|down_1|NZ_CP022669.1_139220_140447_+	PRK08322, PRK08322, acetolactate synthase large subunit	NA|394aa|down_2|NZ_CP022669.1_140502_141684_+	cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor	NA|197aa|down_3|NZ_CP022669.1_141807_142398_+	pfam09712, PHA_synth_III_E, Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)	NA|369aa|down_4|NZ_CP022669.1_142394_143501_+	TIGR01836, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit	NA|239aa|down_5|NZ_CP022669.1_144410_145127_-	pfam05630, NPP1, Necrosis inducing protein (NPP1)	NA|221aa|down_6|NZ_CP022669.1_147135_147798_+	NA	NA|417aa|down_7|NZ_CP022669.1_148474_149725_+	TIGR03453, partition_RepA, plasmid partitioning protein RepA	NA|280aa|down_8|NZ_CP022669.1_150483_151323_-	pfam15610, PRTase_3, PRTase ComF-like	NA|214aa|down_9|NZ_CP022669.1_151309_151951_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]
