The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	158204	166608	2599117		Bacillus_phage(50.0%)	7	NA	NA
WP_014123956.1|158204_158978_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	25.1	1.2e-06
WP_094243242.1|158992_160285_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_061840814.1|160281_161517_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.8	6.9e-110
WP_061840813.1|161503_161977_+	SUF system NifU family Fe-S cluster assembly protein	NA	A0A2H4N7M4	Lake_Baikal_phage	28.5	4.5e-09
WP_061840812.1|162083_162788_+	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	30.9	2.4e-22
WP_061840811.1|163016_164756_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.0	5.6e-41
WP_069029204.1|164745_166608_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.1	3.7e-38
>prophage 2
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	177047	185334	2599117		Lactobacillus_phage(50.0%)	6	NA	NA
WP_094244155.1|177047_178286_-	NADPH-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	62.9	1.7e-63
WP_014123975.1|178303_178912_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	53.3	3.7e-56
WP_014123976.1|179111_179816_-	deoxynucleoside kinase	NA	K4I4F1	Lactobacillus_phage	40.2	8.4e-44
WP_014123977.1|180158_181628_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	40.7	1.2e-81
WP_014123978.1|181855_183568_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	22.3	1.8e-07
WP_103083365.1|183567_185334_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.1	5.7e-49
>prophage 3
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	292465	300931	2599117		Streptococcus_phage(66.67%)	10	NA	NA
WP_061840414.1|292465_293866_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	28.9	2.7e-41
WP_069029149.1|294085_295828_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	44.3	1.7e-53
WP_061840413.1|295845_296157_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_014124100.1|296218_296815_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_094243282.1|296844_297498_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.2	2.8e-54
WP_014124102.1|297494_297827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061840411.1|297869_298802_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	35.0	4.2e-35
WP_094243283.1|298825_299656_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_094243284.1|299642_299999_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	62.2	1.1e-07
WP_094243285.1|300064_300931_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	58.7	6.0e-84
>prophage 4
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	388914	396042	2599117	integrase	Lactobacillus_phage(33.33%)	10	388772:388798	402316:402342
388772:388798	attL	AACTCCCGCCGTCTCCATTTGGAGATT	NA	NA	NA	NA
WP_061840130.1|388914_390060_-|integrase	site-specific integrase	integrase	A0A172LN96	Lactococcus_phage	40.5	2.1e-68
WP_094243310.1|390391_391384_-	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	52.3	2.3e-92
WP_157727964.1|391462_392077_-	hypothetical protein	NA	O64371	Lactobacillus_phage	50.5	1.7e-21
WP_094243312.1|392343_392781_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_094243313.1|392791_393214_-	helix-turn-helix transcriptional regulator	NA	A0A2P1JU09	Anoxybacillus_phage	42.9	2.2e-23
WP_094243314.1|393367_393940_+	helix-turn-helix transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	39.7	8.1e-05
WP_157727966.1|393951_394104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094243315.1|394521_394992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094243316.1|394992_395202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094243317.1|395241_396042_+	hypothetical protein	NA	A0A2P0ZLG2	Lactobacillus_phage	36.7	4.0e-34
402316:402342	attR	AACTCCCGCCGTCTCCATTTGGAGATT	NA	NA	NA	NA
>prophage 5
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	1233149	1295354	2599117	transposase	Enterobacteria_phage(33.33%)	50	NA	NA
WP_094243223.1|1233149_1234568_-|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
WP_094243613.1|1234649_1236017_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_094243614.1|1236278_1237571_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_014124622.1|1237582_1238977_-	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_069028863.1|1239112_1239895_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061840435.1|1240199_1240526_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_094243615.1|1240526_1242158_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_094243616.1|1243047_1245015_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_094243617.1|1245312_1246344_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_094243618.1|1246356_1247325_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_094243619.1|1247321_1248032_-	trehalose utilization protein ThuA	NA	NA	NA	NA	NA
WP_094243620.1|1248046_1249120_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_094243621.1|1249283_1250159_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243622.1|1250364_1251249_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_014123943.1|1251813_1252674_+	group II intron reverse transcriptase/maturase	NA	D4HTV9	Vibrio_phage	29.8	1.7e-14
WP_014123482.1|1252727_1253084_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_013655060.1|1253302_1254664_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_094243623.1|1256381_1258016_-	alpha-glucosidase	NA	NA	NA	NA	NA
WP_094243624.1|1259780_1260779_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.3	3.3e-17
WP_103100298.1|1260956_1263509_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_083207564.1|1263621_1264332_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_094243625.1|1264333_1265161_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_014124595.1|1265157_1265973_-	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_014124594.1|1265991_1266489_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_061840446.1|1266501_1266921_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_014124116.1|1267304_1268627_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.4	7.4e-94
WP_094243626.1|1268809_1269961_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_094243627.1|1270221_1271823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014124590.1|1271837_1272959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094243628.1|1273141_1273372_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014124588.1|1273379_1273562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061840449.1|1273689_1273929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014124586.1|1274103_1274430_-	putative beta-fructofuranosidase	NA	NA	NA	NA	NA
WP_094243630.1|1274679_1276002_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.5	5.7e-94
WP_014124585.1|1276201_1277239_-	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_014124582.1|1279005_1279848_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_014124581.1|1279895_1281557_-	alpha-glucosidase	NA	NA	NA	NA	NA
WP_014124580.1|1281750_1281990_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_081497498.1|1282058_1282748_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	24.9	9.5e-08
WP_014124578.1|1283063_1284113_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_094243631.1|1284212_1285787_+	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_014124576.1|1285779_1286211_+	universal stress protein	NA	NA	NA	NA	NA
WP_014124575.1|1286380_1287382_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_094243632.1|1287734_1289066_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_094243633.1|1289198_1290494_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_094243634.1|1290513_1290819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243635.1|1291154_1291760_+	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_094243636.1|1291759_1292455_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_094243637.1|1292451_1293861_+	energy-coupling factor ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.3e-16
WP_014125033.1|1293992_1295354_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	1305441	1367329	2599117	transposase,protease,tRNA	Streptococcus_phage(26.67%)	58	NA	NA
WP_094243647.1|1305441_1306770_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_094243648.1|1307341_1308295_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_094243649.1|1308312_1308771_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_094243650.1|1308770_1310207_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_094243651.1|1310213_1311140_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_094243652.1|1311296_1312046_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243653.1|1312269_1313631_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_094243654.1|1314786_1315473_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_014124116.1|1315739_1317062_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.4	7.4e-94
WP_094243655.1|1317248_1318262_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_094243656.1|1318558_1320550_-	transketolase	NA	NA	NA	NA	NA
WP_094243657.1|1320563_1321901_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_069028828.1|1321918_1322188_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_083207560.1|1322209_1322779_-	SIS domain-containing protein	NA	A0A067XQR2	Caulobacter_phage	30.6	4.7e-13
WP_069028827.1|1322796_1324743_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_094243658.1|1324969_1325287_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_069028825.1|1325287_1325539_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243659.1|1325702_1326563_-	ROK family protein	NA	NA	NA	NA	NA
WP_094243660.1|1326578_1327952_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	29.3	1.4e-42
WP_069028822.1|1327948_1329271_-	alpha-L-fucosidase	NA	NA	NA	NA	NA
WP_094243661.1|1329270_1330272_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_094244172.1|1330300_1331620_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_094243662.1|1331919_1332651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094243663.1|1332756_1333896_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	38.3	5.9e-47
WP_094243664.1|1333924_1335190_-	GntP family permease	NA	NA	NA	NA	NA
WP_094243665.1|1335462_1335684_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_094243666.1|1335673_1336729_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_094243667.1|1337172_1338483_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	3.6e-64
WP_061841221.1|1338620_1339553_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_061841220.1|1339623_1340541_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_061841219.1|1340716_1341250_+	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	37.6	1.6e-23
WP_094243668.1|1341329_1341863_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_061841217.1|1341864_1342329_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_061841216.1|1342514_1343495_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_014124519.1|1343646_1344327_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	43.5	1.9e-45
WP_061841214.1|1344544_1345417_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_014124517.1|1345471_1345999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014124516.1|1346036_1346603_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014124515.1|1346681_1347137_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_014124514.1|1347162_1347993_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243669.1|1348175_1349978_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_014124512.1|1350071_1350896_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	55.7	5.7e-76
WP_014124511.1|1350920_1352387_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	46.0	4.4e-111
WP_094243670.1|1352575_1353403_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014124509.1|1353946_1355587_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	54.0	6.3e-151
WP_014124508.1|1355617_1355902_-	co-chaperone GroES	NA	A0A221S465	uncultured_virus	42.4	9.5e-15
WP_069028806.1|1356164_1356797_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014124506.1|1356845_1357652_-	MBL fold metallo-hydrolase	NA	A0A2H4J3R0	uncultured_Caudovirales_phage	37.7	2.5e-36
WP_014124505.1|1357704_1358568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243671.1|1358572_1359892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243672.1|1359888_1361724_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	36.7	2.2e-35
WP_094243673.1|1361730_1362435_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.0	8.4e-44
WP_094243674.1|1362854_1363889_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_014124499.1|1364418_1365153_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	50.8	4.8e-66
WP_014124498.1|1365318_1365516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124175375.1|1365534_1365660_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243676.1|1365747_1366068_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_014123848.1|1366222_1367329_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	1683164	1725843	2599117	transposase,tRNA,integrase	Streptococcus_phage(28.57%)	40	1700051:1700076	1722255:1722280
WP_094243738.1|1683164_1684370_-|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	43.6	1.4e-78
WP_094243798.1|1684664_1685639_-|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
WP_014123885.1|1685829_1688361_+	DEAD/DEAH box helicase	NA	Q9YNZ9	Choristoneura_fumiferana_nuclear_polyhedrosis_virus	25.3	1.1e-40
WP_061840043.1|1688363_1689077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038025595.1|1689236_1689836_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA	NA
WP_014123882.1|1689849_1690833_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
WP_014123881.1|1690854_1691253_-	PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM	NA	NA	NA	NA	NA
WP_014123880.1|1691341_1692484_-	glycerol dehydrogenase	NA	NA	NA	NA	NA
WP_014123879.1|1692661_1693630_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_061840045.1|1693762_1695376_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_146028686.1|1695403_1696315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243800.1|1696341_1696590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243801.1|1697057_1697771_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243802.1|1697904_1699836_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_094243803.1|1699860_1701300_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
1700051:1700076	attL	ATTTTTATCATCACTATAAAGAAGAT	NA	NA	NA	NA
WP_014123873.1|1701356_1701959_-	VanZ family protein	NA	NA	NA	NA	NA
WP_094243804.1|1704216_1704471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028790175.1|1706128_1706995_+	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_094243805.1|1707011_1707551_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243806.1|1707699_1708536_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_094243807.1|1708680_1710132_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	33.1	5.9e-68
WP_094243808.1|1710219_1711038_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_094244179.1|1711302_1711662_+	hotdog fold thioesterase	NA	NA	NA	NA	NA
WP_028790182.1|1711928_1712183_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_094243809.1|1712394_1713300_+	ribokinase	NA	NA	NA	NA	NA
WP_094243810.1|1713585_1714137_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_157728022.1|1714254_1714359_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_094243811.1|1714880_1715372_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_094243812.1|1715505_1715775_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	51.2	2.7e-19
WP_094243813.1|1715771_1716005_-	toxin-antitoxin system, antitoxin component	NA	NA	NA	NA	NA
WP_094243814.1|1716183_1717410_-	MFS transporter	NA	NA	NA	NA	NA
WP_157728051.1|1717794_1717896_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_157728024.1|1717993_1718194_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A1P8CWQ3	Bacillus_phage	52.6	2.6e-11
WP_094243816.1|1718224_1718476_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_094243817.1|1718607_1718829_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_094243818.1|1719009_1720974_-	transcription antiterminator	NA	NA	NA	NA	NA
WP_094243819.1|1721060_1722449_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	26.5	6.3e-43
1722255:1722280	attR	ATCTTCTTTATAGTGATGATAAAAAT	NA	NA	NA	NA
WP_094243820.1|1722459_1722771_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_094243821.1|1722808_1724077_-	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_094243822.1|1724592_1725843_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	56.6	8.3e-111
>prophage 8
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	1731537	1800674	2599117	transposase,integrase	Streptococcus_phage(40.0%)	55	1771445:1771460	1781177:1781192
WP_094243825.1|1731537_1732860_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.8	6.7e-95
WP_094244180.1|1733052_1734441_-	D-xylose transporter XylE	NA	NA	NA	NA	NA
WP_094244181.1|1734793_1736293_-	xylulokinase	NA	NA	NA	NA	NA
WP_094243826.1|1736311_1737619_-	xylose isomerase	NA	NA	NA	NA	NA
WP_094243827.1|1737987_1739148_+	ROK family protein	NA	NA	NA	NA	NA
WP_094243828.1|1739255_1740221_-	D-ribose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_094243829.1|1740238_1741204_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_094243830.1|1741200_1742685_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.5	8.5e-14
WP_094243831.1|1742696_1743095_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_094243832.1|1743069_1743978_-	ribokinase	NA	NA	NA	NA	NA
WP_094243833.1|1743982_1744957_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243834.1|1745201_1746299_-	agmatine deiminase	NA	M1HCB6	Acanthocystis_turfacea_Chlorella_virus	49.4	3.7e-99
WP_094243835.1|1747742_1748762_-	putrescine carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	29.7	1.9e-20
WP_094243836.1|1751295_1752546_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	53.9	5.0e-100
WP_094243837.1|1753396_1754440_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_094243838.1|1754542_1755910_-	sugar porter family MFS transporter	NA	O13311	Aichi_virus	27.8	3.8e-24
WP_094243839.1|1755986_1757411_-	L-arabinose isomerase	NA	NA	NA	NA	NA
WP_094243840.1|1757453_1758152_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA	NA
WP_094243841.1|1758173_1759769_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA	NA
WP_094243630.1|1760386_1761709_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.5	5.7e-94
WP_094243842.1|1762038_1763535_+	phytoene desaturase	NA	NA	NA	NA	NA
WP_061840054.1|1763515_1764382_+	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_069028693.1|1764398_1764938_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094243843.1|1765491_1766700_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_061840057.1|1766756_1768226_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_014123854.1|1768468_1769029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094244182.1|1769078_1769942_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014123851.1|1770341_1770575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243844.1|1770642_1771194_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
1771445:1771460	attL	ATAAAAAATTTTAATT	NA	NA	NA	NA
WP_014123850.1|1771467_1771803_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SEX8	Streptococcus_phage	43.5	3.5e-16
WP_041591760.1|1771795_1772032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243845.1|1774269_1774749_+	UTRA domain-containing protein	NA	NA	NA	NA	NA
WP_005225225.1|1775919_1776612_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_005237709.1|1776628_1777180_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	36.8	3.6e-18
WP_005237711.1|1777520_1777700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094243846.1|1777864_1779184_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	34.5	1.2e-62
WP_068710626.1|1779529_1780081_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	41.7	8.3e-31
WP_035020741.1|1780320_1780938_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_094243847.1|1781503_1781866_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
1781177:1781192	attR	ATAAAAAATTTTAATT	NA	NA	NA	NA
WP_051923348.1|1781871_1782147_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_094243848.1|1782334_1784002_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_094243849.1|1784071_1784182_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA	NA
WP_083498309.1|1784218_1784392_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA	NA
WP_068710628.1|1784369_1784711_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	45.8	7.7e-19
WP_094243850.1|1784829_1786572_-	arsenical pump-driving ATPase	NA	NA	NA	NA	NA
WP_094243851.1|1786586_1786952_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA	NA
WP_014123801.1|1787207_1788638_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_094243852.1|1788990_1790853_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.1	4.1e-98
WP_028791093.1|1791067_1792357_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_069028902.1|1792937_1794227_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_003103602.1|1794792_1795026_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_094243853.1|1796011_1796350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014125710.1|1796578_1797286_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_014125711.1|1797470_1798043_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	40.4	2.8e-21
WP_094243854.1|1799512_1800674_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
>prophage 9
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	2294170	2302555	2599117		Staphylococcus_phage(28.57%)	8	NA	NA
WP_094244079.1|2294170_2294671_-	dUTP diphosphatase	NA	J9PV85	Bacillus_phage	53.5	1.1e-42
WP_094244194.1|2294917_2295757_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	45.9	2.1e-57
WP_014123416.1|2296007_2296814_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	37.3	5.4e-39
WP_014123415.1|2296810_2298058_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	54.8	3.0e-113
WP_014123414.1|2298238_2298436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014123413.1|2298597_2300220_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.2	4.9e-47
WP_014123412.1|2300275_2301145_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	30.9	2.5e-13
WP_014123411.1|2301262_2302555_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	35.5	5.2e-68
>prophage 10
NZ_CP020017	Tetragenococcus halophilus strain KUD23, complete genome	2599117	2465188	2528331	2599117	transposase	Streptococcus_phage(42.86%)	55	NA	NA
WP_094244116.1|2465188_2465869_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	2.1e-108
WP_014123534.1|2466060_2466627_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094244117.1|2466675_2469333_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_094244116.1|2469424_2470105_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	2.1e-108
WP_061841314.1|2470231_2470933_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.5	8.6e-33
WP_061841311.1|2475208_2475760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061841310.1|2475918_2476554_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_061841309.1|2476560_2477880_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	43.0	2.5e-89
WP_061841315.1|2478228_2479194_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_094244118.1|2479343_2480288_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_094244119.1|2480284_2481289_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_094244120.1|2481293_2483453_+	transglutaminase domain-containing protein	NA	NA	NA	NA	NA
WP_094244121.1|2483677_2484730_+	CAP domain-containing protein	NA	A0A0E3T7R5	Bacillus_phage	38.4	4.5e-17
WP_069029299.1|2484877_2485426_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_094244122.1|2485626_2487570_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_082786950.1|2487874_2488432_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014125755.1|2488712_2489534_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_061841248.1|2489841_2491266_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_014125752.1|2491329_2492328_+	isocitrate/isopropylmalate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_014125751.1|2492559_2493141_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094244123.1|2493245_2493563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014125749.1|2493905_2494601_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_094244124.1|2494847_2495510_+	uracil-DNA glycosylase	NA	NA	NA	NA	NA
WP_094244125.1|2495853_2496345_+	CvpA family protein	NA	NA	NA	NA	NA
WP_014125746.1|2496498_2497260_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_094244126.1|2497453_2497906_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_094244196.1|2498008_2499046_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_094244127.1|2499103_2499664_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	31.1	1.5e-16
WP_094244128.1|2499750_2500068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061841242.1|2500131_2500899_+	DUF4111 domain-containing protein	NA	NA	NA	NA	NA
WP_094244129.1|2501209_2501740_-	type 1 glutamine amidotransferase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	29.5	4.0e-14
WP_094244130.1|2501901_2503005_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	37.0	3.3e-55
WP_094244131.1|2503208_2503994_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA	NA
WP_069029293.1|2504206_2505706_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA	NA
WP_094244132.1|2505718_2506453_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	2.0e-32
WP_061841237.1|2506477_2507611_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_061841236.1|2507720_2508545_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_094244133.1|2508550_2509969_-	anion permease	NA	NA	NA	NA	NA
WP_061841234.1|2510159_2511413_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_094244134.1|2511502_2512330_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	65.9	1.0e-101
WP_094244135.1|2512759_2513791_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_094244136.1|2513945_2515052_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_041591859.1|2515409_2515688_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014125725.1|2515677_2516310_+	DUF1648 domain-containing protein	NA	NA	NA	NA	NA
WP_041591858.1|2516450_2516666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014125696.1|2516969_2517656_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	7.7e-127
WP_050989788.1|2517749_2517968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014124169.1|2518527_2519826_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.0	6.5e-34
WP_014125704.1|2521263_2521641_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_050989786.1|2522084_2522786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094244137.1|2522919_2523600_+|transposase	IS6-like element ISTeha2 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.2	2.6e-111
WP_014125700.1|2523834_2525529_-	oleate hydratase	NA	NA	NA	NA	NA
WP_014125699.1|2525568_2525703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094244138.1|2526636_2527479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002354485.1|2527644_2528331_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
