assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	1	734370-734621	1	PILER-CR	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA|180aa|down_1|NZ_CP022912.1_736128_736668_-	NA|158aa|up_9|NZ_CP022912.1_723980_724454_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP022912.1_724476_725757_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP022912.1_726005_726815_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP022912.1_726869_727334_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP022912.1_727333_727669_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP022912.1_727817_729389_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|433aa|up_3|NZ_CP022912.1_729763_731062_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP022912.1_731077_731848_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP022912.1_731877_732768_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP022912.1_732864_734010_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP022912.1_734919_736107_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP022912.1_736128_736668_-	NA	NA|115aa|down_2|NZ_CP022912.1_736923_737268_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP022912.1_737456_738395_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP022912.1_738493_739483_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP022912.1_739504_740836_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP022912.1_740861_742070_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP022912.1_742103_744398_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP022912.1_744411_744801_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP022912.1_744872_746237_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	2	1140241-1140514	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|919aa|up_9|NZ_CP022912.1_1126833_1129590_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP022912.1_1129646_1130948_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP022912.1_1130995_1133230_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP022912.1_1133307_1133556_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP022912.1_1133555_1133891_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP022912.1_1133961_1134753_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP022912.1_1134980_1136618_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP022912.1_1136705_1138004_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP022912.1_1138063_1138936_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP022912.1_1139229_1139901_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP022912.1_1142275_1143754_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP022912.1_1143780_1145058_-	cd06174, MFS, Major Facilitator Superfamily	NA|339aa|down_2|NZ_CP022912.1_1145407_1146424_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP022912.1_1146576_1147362_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|NZ_CP022912.1_1147431_1148886_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_5|NZ_CP022912.1_1148979_1150317_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_CP022912.1_1150294_1151074_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_CP022912.1_1151070_1151931_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_CP022912.1_1152078_1152654_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP022912.1_1152670_1152931_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	3	1140588-1140860	2,2,3	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,28,28	0	0	NA	NA	I-E:I-E:I-E	4,4,3	4	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|919aa|up_9|NZ_CP022912.1_1126833_1129590_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP022912.1_1129646_1130948_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP022912.1_1130995_1133230_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP022912.1_1133307_1133556_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP022912.1_1133555_1133891_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP022912.1_1133961_1134753_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP022912.1_1134980_1136618_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP022912.1_1136705_1138004_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP022912.1_1138063_1138936_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP022912.1_1139229_1139901_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP022912.1_1142275_1143754_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP022912.1_1143780_1145058_-	cd06174, MFS, Major Facilitator Superfamily	NA|339aa|down_2|NZ_CP022912.1_1145407_1146424_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|262aa|down_3|NZ_CP022912.1_1146576_1147362_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|NZ_CP022912.1_1147431_1148886_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_5|NZ_CP022912.1_1148979_1150317_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_CP022912.1_1150294_1151074_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_CP022912.1_1151070_1151931_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_CP022912.1_1152078_1152654_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP022912.1_1152670_1152931_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	4	1168727-1169913	4,3,3,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cse2gr11,cas7,cas1,cas2	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	15,19,19,15	19	TypeI-E	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|424aa|up_9|NZ_CP022912.1_1152921_1154193_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP022912.1_1154270_1154636_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP022912.1_1154951_1156751_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP022912.1_1156750_1158463_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP022912.1_1158536_1159271_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_4|NZ_CP022912.1_1159629_1162296_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|161aa|up_3|NZ_CP022912.1_1164210_1164693_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_2|NZ_CP022912.1_1164705_1165797_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP022912.1_1167417_1168335_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP022912.1_1168336_1168621_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP022912.1_1169933_1170971_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022912.1_1171222_1172131_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP022912.1_1172132_1173560_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022912.1_1173559_1174165_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP022912.1_1174214_1174538_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022912.1_1174731_1175043_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|160aa|down_6|NZ_CP022912.1_1175770_1176250_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|NZ_CP022912.1_1176246_1177296_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|NZ_CP022912.1_1177276_1178038_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|NZ_CP022912.1_1178031_1178658_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	5	1718311-1718428	4	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|62aa|up_9|NZ_CP022912.1_1707596_1707782_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP022912.1_1707794_1708694_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP022912.1_1708886_1710077_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP022912.1_1710073_1711333_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP022912.1_1711322_1712951_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP022912.1_1713223_1714582_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP022912.1_1714586_1715663_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP022912.1_1716125_1716776_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP022912.1_1716829_1717084_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP022912.1_1717083_1718214_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP022912.1_1718447_1720733_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP022912.1_1721428_1725181_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP022912.1_1725308_1726031_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP022912.1_1726177_1728805_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|208aa|down_4|NZ_CP022912.1_1730638_1731262_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_5|NZ_CP022912.1_1731405_1735800_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_6|NZ_CP022912.1_1735800_1737450_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP022912.1_1737454_1738231_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP022912.1_1738304_1739489_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP022912.1_1739519_1740842_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	6	2328919-2329042	5	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA|30aa|down_7|NZ_CP022912.1_2337938_2338028_+	NA|471aa|up_9|NZ_CP022912.1_2318373_2319786_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP022912.1_2320342_2320552_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP022912.1_2321006_2321633_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP022912.1_2321653_2323756_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP022912.1_2323759_2324407_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP022912.1_2324470_2325139_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP022912.1_2325135_2325921_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP022912.1_2325924_2326737_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP022912.1_2326748_2328353_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP022912.1_2328478_2328784_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP022912.1_2329356_2330613_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP022912.1_2330653_2332027_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP022912.1_2332241_2332883_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP022912.1_2332922_2334071_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP022912.1_2334361_2335573_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP022912.1_2335685_2336618_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP022912.1_2336614_2337640_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP022912.1_2337938_2338028_+	NA	NA|390aa|down_8|NZ_CP022912.1_2338193_2339363_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP022912.1_2339597_2340179_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	7	2966997-2967088	6	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA|70aa|up_9|NZ_CP022912.1_2956073_2956283_-,NA	NA|70aa|up_9|NZ_CP022912.1_2956073_2956283_-	NA	NA|1321aa|up_8|NZ_CP022912.1_2956337_2960300_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP022912.1_2960339_2960978_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP022912.1_2961265_2962357_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP022912.1_2962356_2963049_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP022912.1_2963060_2963447_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP022912.1_2963454_2964255_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP022912.1_2964264_2964855_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP022912.1_2964865_2965360_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP022912.1_2965380_2966709_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP022912.1_2967511_2968108_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP022912.1_2968128_2968356_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP022912.1_2968393_2969635_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP022912.1_2969927_2971184_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP022912.1_2971444_2972365_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP022912.1_2972364_2972670_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP022912.1_2972821_2973421_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP022912.1_2973417_2975964_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP022912.1_2975963_2977136_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP022912.1_2977265_2977958_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	8	3244787-3244931	7	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA|56aa|up_3|NZ_CP022912.1_3241829_3241997_+,NA	NA|490aa|up_9|NZ_CP022912.1_3234925_3236395_-	pfam02386, TrkH, Cation transport protein	NA|62aa|up_8|NZ_CP022912.1_3236591_3236777_-	pfam06085, Rz1, Lipoprotein Rz1 precursor	NA|72aa|up_7|NZ_CP022912.1_3237489_3237705_-	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S	NA|244aa|up_6|NZ_CP022912.1_3237892_3238624_-	PRK09940, PRK09940, transcriptional regulator YdeO; Provisional	NA|320aa|up_5|NZ_CP022912.1_3238975_3239935_-	COG3272, COG3272, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_4|NZ_CP022912.1_3241317_3241746_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|NZ_CP022912.1_3241829_3241997_+	NA	NA|73aa|up_2|NZ_CP022912.1_3242036_3242255_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP022912.1_3242232_3243303_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP022912.1_3243437_3244721_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|478aa|down_0|NZ_CP022912.1_3248175_3249609_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_1|NZ_CP022912.1_3249684_3250737_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_2|NZ_CP022912.1_3251697_3252651_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP022912.1_3252691_3253687_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP022912.1_3253841_3254660_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP022912.1_3254660_3255719_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP022912.1_3255721_3256411_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP022912.1_3256410_3257184_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP022912.1_3257350_3257500_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP022912.1_3257628_3258417_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	9	3496902-3496998	8	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|388aa|up_9|NZ_CP022912.1_3487210_3488374_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|339aa|up_8|NZ_CP022912.1_3489252_3490269_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|289aa|up_7|NZ_CP022912.1_3490622_3491489_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP022912.1_3491490_3491703_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP022912.1_3491810_3492332_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP022912.1_3492367_3493753_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP022912.1_3493926_3494421_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP022912.1_3494423_3495146_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP022912.1_3495263_3495773_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP022912.1_3495769_3496837_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP022912.1_3497031_3497925_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP022912.1_3497921_3498737_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP022912.1_3498747_3500007_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|365aa|down_3|NZ_CP022912.1_3502829_3503924_-	COG2603, COG2603, Predicted ATPase [General function prediction only]	NA|309aa|down_4|NZ_CP022912.1_3503992_3504919_-	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|161aa|down_5|NZ_CP022912.1_3505148_3505631_+	COG3194, DAL3, Ureidoglycolate hydrolase [Nucleotide transport and metabolism]	NA|272aa|down_6|NZ_CP022912.1_3505708_3506524_+	PRK10163, PRK10163, HTH-type transcriptional repressor AllR	NA|805aa|down_7|NZ_CP022912.1_3514610_3517025_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|229aa|down_8|NZ_CP022912.1_3517021_3517708_-	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional	NA|208aa|down_9|NZ_CP022912.1_3517678_3518302_+	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	10	3626221-3626365	9	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA|28aa|down_2|NZ_CP022912.1_3628410_3628494_-	NA|357aa|up_9|NZ_CP022912.1_3611359_3612430_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP022912.1_3612522_3613104_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP022912.1_3613108_3614926_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP022912.1_3615081_3616455_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP022912.1_3616530_3617850_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP022912.1_3618256_3619552_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP022912.1_3619609_3620299_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP022912.1_3620488_3621691_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP022912.1_3621687_3624834_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP022912.1_3624959_3626144_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP022912.1_3626388_3627297_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP022912.1_3627421_3628333_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP022912.1_3628410_3628494_-	NA	NA|95aa|down_3|NZ_CP022912.1_3628979_3629264_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP022912.1_3629335_3630013_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP022912.1_3630270_3630462_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP022912.1_3630511_3631036_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_CP022912.1_3631212_3631677_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP022912.1_3631796_3632606_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP022912.1_3632622_3633738_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	11	3660331-3660474	10	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	ACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|321aa|up_9|NZ_CP022912.1_3650817_3651780_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|224aa|up_8|NZ_CP022912.1_3652395_3653067_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_7|NZ_CP022912.1_3653076_3654273_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|194aa|up_6|NZ_CP022912.1_3654250_3654832_+	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|258aa|up_5|NZ_CP022912.1_3654833_3655607_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_4|NZ_CP022912.1_3655793_3656069_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_3|NZ_CP022912.1_3656103_3657213_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_2|NZ_CP022912.1_3657305_3658139_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|up_1|NZ_CP022912.1_3658364_3658904_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_0|NZ_CP022912.1_3659005_3660217_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_0|NZ_CP022912.1_3660594_3661608_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_1|NZ_CP022912.1_3661604_3662555_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_2|NZ_CP022912.1_3662551_3663361_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_3|NZ_CP022912.1_3663370_3664237_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_4|NZ_CP022912.1_3664254_3665199_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_5|NZ_CP022912.1_3665200_3666865_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_6|NZ_CP022912.1_3666941_3667889_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|361aa|down_7|NZ_CP022912.1_3667965_3669048_+	PRK09526, lacI, lac repressor; Reviewed	NA|1025aa|down_8|NZ_CP022912.1_3669170_3672245_+	PRK09525, lacZ, beta-galactosidase	NA|418aa|down_9|NZ_CP022912.1_3672296_3673550_+	PRK09528, lacY, galactoside permease; Reviewed
GCF_002269325.1_ASM226932v1	NZ_CP022912	Escherichia coli O6:H16 strain 2011EL-1370-2 chromosome, complete genome	12	4013586-4013718	6	PILER-CR	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA|156aa|up_9|NZ_CP022912.1_4004827_4005295_+,NA	NA|156aa|up_9|NZ_CP022912.1_4004827_4005295_+	NA	NA|60aa|up_8|NZ_CP022912.1_4005393_4005573_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|160aa|up_7|NZ_CP022912.1_4005593_4006073_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP022912.1_4006264_4008127_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP022912.1_4008119_4008650_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP022912.1_4008757_4010089_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP022912.1_4010147_4010435_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP022912.1_4010431_4011718_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP022912.1_4011768_4012710_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP022912.1_4012724_4013495_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP022912.1_4013968_4015483_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP022912.1_4015513_4016656_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP022912.1_4016795_4018013_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP022912.1_4018086_4019640_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP022912.1_4019748_4020534_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP022912.1_4020539_4021130_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP022912.1_4021215_4021611_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP022912.1_4021870_4025092_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP022912.1_4025109_4026258_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP022912.1_4026713_4027535_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
