assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002278015.2_ASM227801v2	NZ_CP023011	Enterococcus hirae strain FDAARGOS_234 chromosome, complete genome	1	223192-223319	1	CRISPRCasFinder	no		RT,cas3,cas9,cas1,cas2,csn2,cas14j,csa3,DinG,DEDDh	Orphan	CCAAGTATTGTTCATCATCTACTCACTTCGTTCTTAGTGATTCA	44	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas9,cas1,cas2,csn2,cas14j,csa3,DinG,DEDDh	NA|78aa|up_6|NZ_CP023011.2_218021_218255_-,NA|125aa|up_3|NZ_CP023011.2_221088_221463_-,NA|347aa|down_4|NZ_CP023011.2_227147_228188_+,NA|327aa|down_6|NZ_CP023011.2_229213_230194_-	NA|234aa|up_9|NZ_CP023011.2_214691_215393_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|510aa|up_8|NZ_CP023011.2_215822_217352_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|101aa|up_7|NZ_CP023011.2_217694_217997_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|78aa|up_6|NZ_CP023011.2_218021_218255_-	NA	NA|395aa|up_5|NZ_CP023011.2_218658_219843_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|226aa|up_4|NZ_CP023011.2_220019_220697_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|125aa|up_3|NZ_CP023011.2_221088_221463_-	NA	NA|72aa|up_2|NZ_CP023011.2_221850_222066_-	COG0379, NadA, Quinolinate synthase [Coenzyme metabolism]	NA|121aa|up_1|NZ_CP023011.2_222211_222574_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP023011.2_222632_223136_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP023011.2_223519_224209_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP023011.2_224312_224735_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP023011.2_225274_225943_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|289aa|down_3|NZ_CP023011.2_225956_226823_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|347aa|down_4|NZ_CP023011.2_227147_228188_+	NA	NA|190aa|down_5|NZ_CP023011.2_228624_229194_+	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease	NA|327aa|down_6|NZ_CP023011.2_229213_230194_-	NA	NA|295aa|down_7|NZ_CP023011.2_230602_231487_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_8|NZ_CP023011.2_231730_232276_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_9|NZ_CP023011.2_232375_232546_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex
GCF_002278015.2_ASM227801v2	NZ_CP023011	Enterococcus hirae strain FDAARGOS_234 chromosome, complete genome	2	614124-614264	1	PILER-CR	no		RT,cas3,cas9,cas1,cas2,csn2,cas14j,csa3,DinG,DEDDh	Orphan	GCTTTTTGAACGCCGTTTA	19	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,cas9,cas1,cas2,csn2,cas14j,csa3,DinG,DEDDh	NA,NA|61aa|down_5|NZ_CP023011.2_619299_619482_-,NA|107aa|down_9|NZ_CP023011.2_625945_626266_-	NA|138aa|up_9|NZ_CP023011.2_603956_604370_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|228aa|up_8|NZ_CP023011.2_604678_605362_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|194aa|up_7|NZ_CP023011.2_605499_606081_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|229aa|up_6|NZ_CP023011.2_606389_607076_+	COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]	NA|236aa|up_5|NZ_CP023011.2_607130_607838_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|273aa|up_4|NZ_CP023011.2_607859_608678_-	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|389aa|up_3|NZ_CP023011.2_608890_610057_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|319aa|up_2|NZ_CP023011.2_610154_611111_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|378aa|up_1|NZ_CP023011.2_611110_612244_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|521aa|up_0|NZ_CP023011.2_612236_613799_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|361aa|down_0|NZ_CP023011.2_614423_615506_-	COG1744, Med, Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]	NA|133aa|down_1|NZ_CP023011.2_615579_615978_-	PRK05578, PRK05578, cytidine deaminase; Validated	NA|221aa|down_2|NZ_CP023011.2_615995_616658_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|434aa|down_3|NZ_CP023011.2_616672_617974_-	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed	NA|339aa|down_4|NZ_CP023011.2_618114_619131_-	cd19976, PBP1_DegA_Like, ligand-binding domain of putative DNA transcription regulators highly similar to that of the transcription regulator DegA	NA|61aa|down_5|NZ_CP023011.2_619299_619482_-	NA	NA|202aa|down_6|NZ_CP023011.2_621974_622580_-	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|308aa|down_7|NZ_CP023011.2_622845_623769_+	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|522aa|down_8|NZ_CP023011.2_623828_625394_+	PRK00074, guaA, GMP synthase; Reviewed	NA|107aa|down_9|NZ_CP023011.2_625945_626266_-	NA
GCF_002278015.2_ASM227801v2	NZ_CP023011	Enterococcus hirae strain FDAARGOS_234 chromosome, complete genome	3	939102-939520	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	RT,cas3,cas9,cas1,cas2,csn2,cas14j,csa3,DinG,DEDDh	Type II-B,Type II-A,Type II-C	GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC,GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC,GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	3,5,4	5	TypeII-B,TypeII-A,TypeII-C	RT,cas3,cas9,cas1,cas2,csn2,cas14j,csa3,DinG,DEDDh	NA|282aa|up_6|NZ_CP023011.2_929612_930458_+,NA|43aa|up_4|NZ_CP023011.2_932333_932462_-,NA	NA|156aa|up_9|NZ_CP023011.2_927083_927551_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|105aa|up_8|NZ_CP023011.2_927847_928162_-	pfam14145, YrhK, YrhK-like protein	NA|378aa|up_7|NZ_CP023011.2_928189_929323_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|282aa|up_6|NZ_CP023011.2_929612_930458_+	NA	NA|565aa|up_5|NZ_CP023011.2_930585_932280_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|43aa|up_4|NZ_CP023011.2_932333_932462_-	NA	cas9|1337aa|up_3|NZ_CP023011.2_933136_937147_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|289aa|up_2|NZ_CP023011.2_937128_937995_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|115aa|up_1|NZ_CP023011.2_937991_938336_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|220aa|up_0|NZ_CP023011.2_938325_938985_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|124aa|down_0|NZ_CP023011.2_939802_940174_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|120aa|down_1|NZ_CP023011.2_940163_940523_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|477aa|down_2|NZ_CP023011.2_940757_942188_-	pfam08280, HTH_Mga, M protein trans-acting positive regulator (MGA) HTH domain	NA|611aa|down_3|NZ_CP023011.2_942683_944516_+	TIGR03811, tyrosine_decarboxylase, tyrosine decarboxylase, Enterococcus type	NA|477aa|down_4|NZ_CP023011.2_944831_946262_+	TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter	NA|440aa|down_5|NZ_CP023011.2_946278_947598_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|848aa|down_6|NZ_CP023011.2_947707_950251_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|485aa|down_7|NZ_CP023011.2_950388_951843_-	pfam18333, ssDNA_DBD, Non-canonical single-stranded DNA-binding domain	NA|200aa|down_8|NZ_CP023011.2_952099_952699_+	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|151aa|down_9|NZ_CP023011.2_952799_953252_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_002278015.2_ASM227801v2	NZ_CP023011	Enterococcus hirae strain FDAARGOS_234 chromosome, complete genome	4	2112971-2113205	2,3,3	CRT,CRISPRCasFinder,PILER-CR	no		RT,cas3,cas9,cas1,cas2,csn2,cas14j,csa3,DinG,DEDDh	Orphan	CATTCAAAACAACATAGCTCTAAAACCT,GTTTTGGAAGCATTCAAAACAACATAGCTCTAAAAC,AGGTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC	28,36,38	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	3,2,2	3	Orphan	RT,cas3,cas9,cas1,cas2,csn2,cas14j,csa3,DinG,DEDDh	NA|269aa|up_8|NZ_CP023011.2_2103744_2104551_-,NA|411aa|up_4|NZ_CP023011.2_2108140_2109373_-,NA|58aa|up_3|NZ_CP023011.2_2109616_2109790_-,NA	NA|112aa|up_9|NZ_CP023011.2_2103236_2103572_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|269aa|up_8|NZ_CP023011.2_2103744_2104551_-	NA	NA|271aa|up_7|NZ_CP023011.2_2104814_2105627_-	cd13600, PBP2_lipoprotein_like_1, Putative periplasmic-binding component of ABC-type methionine uptake transporter system-like; the type 2 periplasmic binding protein fold	NA|224aa|up_6|NZ_CP023011.2_2105638_2106310_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|241aa|up_5|NZ_CP023011.2_2106306_2107029_-	cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter	NA|411aa|up_4|NZ_CP023011.2_2108140_2109373_-	NA	NA|58aa|up_3|NZ_CP023011.2_2109616_2109790_-	NA	NA|303aa|up_2|NZ_CP023011.2_2110512_2111421_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|235aa|up_1|NZ_CP023011.2_2111417_2112122_-	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily	NA|214aa|up_0|NZ_CP023011.2_2112153_2112795_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|217aa|down_0|NZ_CP023011.2_2113386_2114037_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|239aa|down_1|NZ_CP023011.2_2114018_2114735_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|310aa|down_2|NZ_CP023011.2_2114731_2115661_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|259aa|down_3|NZ_CP023011.2_2115657_2116434_-	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	NA|1062aa|down_4|NZ_CP023011.2_2116612_2119798_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|359aa|down_5|NZ_CP023011.2_2119800_2120877_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|427aa|down_6|NZ_CP023011.2_2120882_2122163_-	PRK09357, pyrC, dihydroorotase; Validated	NA|309aa|down_7|NZ_CP023011.2_2122181_2123108_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|428aa|down_8|NZ_CP023011.2_2123120_2124404_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|180aa|down_9|NZ_CP023011.2_2124417_2124957_-	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR
