assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002278095.1_ASM227809v1	NZ_CP022988	Lactobacillus delbrueckii subsp. lactis DSM 20072 chromosome, complete genome	1	284729-285280	1	CRT	no	cas14j	cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	Unclear	AAGAAGNCANCTAAGAAG	18	4	4	284879-284896|284915-284932|284951-284968|284987-285004	NZ_CP022988.1_2025804-2025787|NZ_CP022988.1_1622266-1622249|NZ_CP022988.1_1622266-1622249|NZ_CP022988.1_1622266-1622249	NA	13	13	TypeV	cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	NA|62aa|up_0|NZ_CP022988.1_283179_283365_-,NA|104aa|down_4|NZ_CP022988.1_288393_288705_+,NA|82aa|down_7|NZ_CP022988.1_291698_291944_+	NA|391aa|up_9|NZ_CP022988.1_271091_272264_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|346aa|up_8|NZ_CP022988.1_272387_273425_+	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|295aa|up_7|NZ_CP022988.1_273444_274329_+	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|203aa|up_6|NZ_CP022988.1_274355_274964_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|325aa|up_5|NZ_CP022988.1_274977_275952_+	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]	NA|142aa|up_4|NZ_CP022988.1_276804_277230_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|551aa|up_3|NZ_CP022988.1_278662_280315_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|236aa|up_2|NZ_CP022988.1_280325_281033_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|625aa|up_1|NZ_CP022988.1_281246_283121_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|62aa|up_0|NZ_CP022988.1_283179_283365_-	NA	NA|102aa|down_0|NZ_CP022988.1_285605_285911_-	cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya	NA|110aa|down_1|NZ_CP022988.1_285900_286230_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|338aa|down_2|NZ_CP022988.1_286769_287783_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|123aa|down_3|NZ_CP022988.1_287919_288288_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|104aa|down_4|NZ_CP022988.1_288393_288705_+	NA	NA|223aa|down_5|NZ_CP022988.1_289105_289774_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas14j|569aa|down_6|NZ_CP022988.1_289742_291449_+	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|82aa|down_7|NZ_CP022988.1_291698_291944_+	NA	NA|296aa|down_8|NZ_CP022988.1_292260_293148_-	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|1085aa|down_9|NZ_CP022988.1_293487_296742_+	pfam02435, Glyco_hydro_68, Levansucrase/Invertase
GCF_002278095.1_ASM227809v1	NZ_CP022988	Lactobacillus delbrueckii subsp. lactis DSM 20072 chromosome, complete genome	2	598298-598392	1	CRISPRCasFinder	no		cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	Orphan	AGGCCAGCTCTAAGTCGGCGGCT	23	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	NA,NA|95aa|down_7|NZ_CP022988.1_603045_603330_+	NA|322aa|up_9|NZ_CP022988.1_586902_587868_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|465aa|up_8|NZ_CP022988.1_588013_589408_-	PRK11387, PRK11387, S-methylmethionine permease	NA|311aa|up_7|NZ_CP022988.1_589485_590418_+	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|154aa|up_6|NZ_CP022988.1_590473_590935_+	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|149aa|up_5|NZ_CP022988.1_591295_591742_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|341aa|up_4|NZ_CP022988.1_591723_592746_+	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase	NA|456aa|up_3|NZ_CP022988.1_592835_594203_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|159aa|up_2|NZ_CP022988.1_595302_595779_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|478aa|up_1|NZ_CP022988.1_595858_597292_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|185aa|up_0|NZ_CP022988.1_597360_597915_-	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|89aa|down_0|NZ_CP022988.1_599017_599284_-	pfam06961, DUF1294, Protein of unknown function (DUF1294)	NA|257aa|down_1|NZ_CP022988.1_599380_600151_-	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|59aa|down_2|NZ_CP022988.1_600326_600503_+	pfam04604, L_biotic_typeA, Type-A lantibiotic	NA|169aa|down_3|NZ_CP022988.1_600526_601033_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|267aa|down_4|NZ_CP022988.1_601148_601949_-	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein	NA|237aa|down_5|NZ_CP022988.1_601945_602656_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|82aa|down_6|NZ_CP022988.1_602778_603024_+	cd07321, Extradiol_Dioxygenase_3A_like, Subunit A of Class III extradiol dioxygenases	NA|95aa|down_7|NZ_CP022988.1_603045_603330_+	NA	NA|349aa|down_8|NZ_CP022988.1_603491_604538_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|456aa|down_9|NZ_CP022988.1_606271_607639_+	pfam01610, DDE_Tnp_ISL3, Transposase
GCF_002278095.1_ASM227809v1	NZ_CP022988	Lactobacillus delbrueckii subsp. lactis DSM 20072 chromosome, complete genome	3	1150766-1151604	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas1,cas2	cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	 Type I-U?,Type I-U,Type I-C	GTCGCATCCCGCATGGGATGCGTGGATTGAAAT,GTCGCATCCCGCATGGGATGCGTGGATTGAAAT,GTCGCATCCCGCATGGGATGCGTGGATTGAAAT	33,33,33	0	0	NA	NA	NA:NA:NA	11,12,12	12	TypeI-U?,TypeI-U,TypeI-C	cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	NA,NA	NA|214aa|up_9|NZ_CP022988.1_1139115_1139757_+	PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed	NA|203aa|up_8|NZ_CP022988.1_1139942_1140551_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|223aa|up_7|NZ_CP022988.1_1140553_1141222_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|420aa|up_6|NZ_CP022988.1_1141224_1142484_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	cas3|811aa|up_5|NZ_CP022988.1_1142531_1144964_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|245aa|up_4|NZ_CP022988.1_1145121_1145856_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|625aa|up_3|NZ_CP022988.1_1145852_1147727_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|285aa|up_2|NZ_CP022988.1_1147746_1148601_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas1|344aa|up_1|NZ_CP022988.1_1149261_1150293_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP022988.1_1150306_1150597_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|456aa|down_0|NZ_CP022988.1_1151717_1153085_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|367aa|down_1|NZ_CP022988.1_1153317_1154418_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|409aa|down_2|NZ_CP022988.1_1154419_1155646_+	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|388aa|down_3|NZ_CP022988.1_1155649_1156813_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|453aa|down_4|NZ_CP022988.1_1156976_1158335_+	pfam06738, ThrE, Putative threonine/serine exporter	NA|169aa|down_5|NZ_CP022988.1_1158391_1158898_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|315aa|down_6|NZ_CP022988.1_1158960_1159905_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|754aa|down_7|NZ_CP022988.1_1160045_1162307_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|146aa|down_8|NZ_CP022988.1_1162335_1162773_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|429aa|down_9|NZ_CP022988.1_1163058_1164345_+	TIGR00442, hisS, histidyl-tRNA synthetase
GCF_002278095.1_ASM227809v1	NZ_CP022988	Lactobacillus delbrueckii subsp. lactis DSM 20072 chromosome, complete genome	4	1535202-1535305	3	CRISPRCasFinder	no	csa3	cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	Type I-A	CCGCTGCCCCCGCACTTGTCACAGGT	26	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	NA,NA	NA|285aa|up_9|NZ_CP022988.1_1521805_1522660_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|753aa|up_8|NZ_CP022988.1_1522837_1525096_+	cd02076, P-type_ATPase_H, plant and fungal plasma membrane H(+)-ATPases, and related bacterial and archaeal putative H(+)-ATPases	NA|378aa|up_7|NZ_CP022988.1_1525373_1526507_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|342aa|up_6|NZ_CP022988.1_1526623_1527649_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|296aa|up_5|NZ_CP022988.1_1527850_1528738_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|101aa|up_4|NZ_CP022988.1_1528849_1529152_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|176aa|up_3|NZ_CP022988.1_1529231_1529759_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|759aa|up_2|NZ_CP022988.1_1529748_1532025_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|234aa|up_1|NZ_CP022988.1_1532021_1532723_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|613aa|up_0|NZ_CP022988.1_1532703_1534542_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|615aa|down_0|NZ_CP022988.1_1535885_1537730_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|200aa|down_1|NZ_CP022988.1_1537789_1538389_-	PRK14162, PRK14162, heat shock protein GrpE; Provisional	NA|350aa|down_2|NZ_CP022988.1_1538423_1539473_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|314aa|down_3|NZ_CP022988.1_1539608_1540550_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|198aa|down_4|NZ_CP022988.1_1540663_1541257_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|139aa|down_5|NZ_CP022988.1_1542764_1543181_-	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain	NA|265aa|down_6|NZ_CP022988.1_1544049_1544844_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|304aa|down_7|NZ_CP022988.1_1546141_1547053_+	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|395aa|down_8|NZ_CP022988.1_1547074_1548259_+	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|186aa|down_9|NZ_CP022988.1_1548224_1548782_+	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase
GCF_002278095.1_ASM227809v1	NZ_CP022988	Lactobacillus delbrueckii subsp. lactis DSM 20072 chromosome, complete genome	5	2052663-2052767	4	CRISPRCasFinder	no		cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	Orphan	GTGGTATAATAGTTGGCGTAGGGGAGTGAGAACGAT	36	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas14k,cas3,DEDDh,Cas14u_CAS-V,cas5,cas8c,cas7,cas1,cas2,DinG,c2c9_V-U4,csa3,WYL	NA|75aa|up_8|NZ_CP022988.1_2039678_2039903_-,NA|75aa|up_7|NZ_CP022988.1_2040146_2040371_-,NA|305aa|up_6|NZ_CP022988.1_2040641_2041556_+,NA|66aa|down_3|NZ_CP022988.1_2061834_2062032_+	NA|468aa|up_9|NZ_CP022988.1_2037757_2039161_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|75aa|up_8|NZ_CP022988.1_2039678_2039903_-	NA	NA|75aa|up_7|NZ_CP022988.1_2040146_2040371_-	NA	NA|305aa|up_6|NZ_CP022988.1_2040641_2041556_+	NA	NA|80aa|up_5|NZ_CP022988.1_2041614_2041854_-	pfam10726, DUF2518, Protein of function (DUF2518)	NA|167aa|up_4|NZ_CP022988.1_2041950_2042451_-	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|527aa|up_3|NZ_CP022988.1_2043347_2044928_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|497aa|up_2|NZ_CP022988.1_2047746_2049237_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|up_1|NZ_CP022988.1_2049405_2050164_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|223aa|up_0|NZ_CP022988.1_2051902_2052571_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|223aa|down_0|NZ_CP022988.1_2057420_2058089_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|238aa|down_1|NZ_CP022988.1_2058263_2058977_+	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]	NA|285aa|down_2|NZ_CP022988.1_2059073_2059928_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|66aa|down_3|NZ_CP022988.1_2061834_2062032_+	NA	NA|66aa|down_4|NZ_CP022988.1_2062973_2063171_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|81aa|down_5|NZ_CP022988.1_2063705_2063948_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|270aa|down_6|NZ_CP022988.1_2066318_2067128_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|292aa|down_7|NZ_CP022988.1_2067192_2068068_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|437aa|down_8|NZ_CP022988.1_2068060_2069371_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|90aa|down_9|NZ_CP022988.1_2075191_2075461_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region
