The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	0	70036	4106298	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	77634	136108	4106298	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	164893	225404	4106298	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169127_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174135_174315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	233336	286924	4106298	protease,tRNA,transposase	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236257_236431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	390857	448366	4106298	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391794_391962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400018_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401027_401171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403584_404826_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411330_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417525_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	590420	704173	4106298	tRNA,protease,transposase,tail,terminase	uncultured_Caudovirales_phage(14.29%)	114	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593752_594244_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594262_595336_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595382_596486_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596561_597182_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597202_597712_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597766_598018_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598081_599215_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599222_599609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599605_602125_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602553_602892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602888_603395_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603456_604257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604367_605309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605402_606938_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608617_610468_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610471_611305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611304_612246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|612497_613493_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613610_615899_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616205_617114_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617168_618134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618208_619870_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|619866_620652_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620800_621751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622449_622833_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622890_623493_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624045_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627086_628136_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628283_628862_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636789_637740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|637838_638789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302792.1|638775_638940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|638887_639688_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639749_640133_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640144_641578_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641784_642114_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|642116_642785_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643048_643969_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644015_644228_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644250_644673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|644689_645790_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645886_647404_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647479_648319_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648340_649222_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649303_650398_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650691_651642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651716_652658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|652741_653101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|653482_654520_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|654836_656177_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|656186_656639_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|656735_657917_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_003814219.1|657976_659008_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659048_659288_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659357_660947_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660946_661495_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661575_662148_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662166_663078_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663151_664120_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664242_665316_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665320_667141_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667217_668168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668256_668592_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668725_669376_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669397_670816_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670885_671641_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671609_672368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672378_673260_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673276_673984_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673986_674745_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674954_676697_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676689_677214_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677253_678048_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678215_679289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679387_680338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|680589_680802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680867_681479_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|681958_682279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|682271_682970_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|682984_683206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683223_684174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|684849_685299_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|685285_686563_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686565_687984_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688012_689068_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689073_689316_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689438_690041_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690469_691420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|691437_692085_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|692094_692346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692408_692891_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692892_693093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693092_693488_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693484_693883_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693879_694302_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694309_694810_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695064_695583_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695592_695922_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695939_696230_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696255_698868_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698877_699237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050855787.1|699304_699838_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699834_700224_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700216_704173_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	710339	764269	4106298	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|710339_712070_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712122_712551_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712553_713234_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713233_713692_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713728_714703_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714719_716036_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716067_716565_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716651_717341_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717340_718390_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718386_719181_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719349_719700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719675_720233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|721157_721376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|721362_722313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|724591_725680_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725682_727125_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727229_728375_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728406_729204_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729228_730788_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730784_733157_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733266_734370_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734369_735062_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735205_735907_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735891_736269_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737000_737951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|737937_738081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|738110_738983_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739323_739542_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739581_740961_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741002_742400_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742439_744092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744095_744980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744979_745921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745999_747619_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747785_748601_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748668_749238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749238_750189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750843_751941_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751974_753240_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|753397_754348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754591_755182_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755197_757642_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757761_758733_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758864_759389_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759348_760299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760520_762716_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762788_763196_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|763143_763332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|763318_764269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	886858	954834	4106298	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|886858_887875_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888071_889055_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890653_892042_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892072_893062_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893172_894405_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894686_895487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895509_897741_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898528_898975_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898996_899743_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899886_900864_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901497_902109_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902102_903320_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903460_904411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904407_905127_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905247_907407_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907497_907767_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907855_908062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908060_908588_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908606_909386_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909553_910570_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910642_911134_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911144_912860_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914023_914974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|914970_916821_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917201_917861_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|917948_918101_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|918209_918377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918388_919069_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919350_920067_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920081_921383_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923527_926416_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926639_927992_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928020_928542_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928538_929993_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930027_930276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930381_931257_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931282_932338_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932350_933142_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933174_934545_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|935597_935735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|935721_936672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936724_936946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937105_937318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937437_938556_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938652_938868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939061_939313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939425_940376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940372_940756_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|940810_942628_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942774_943602_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943647_944628_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944624_944837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944833_946015_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946178_946913_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946914_949527_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949662_951576_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952191_952602_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952699_953785_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953883_954834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	978012	1048280	4106298	transposase	Streptococcus_phage(14.29%)	56	NA	NA
WP_005012067.1|978012_978963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979043_979955_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980015_981161_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981180_982095_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982166_982916_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982915_983845_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984088_985915_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985997_986639_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986828_987863_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989699_990764_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991561_992470_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993957_995232_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995385_995766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995773_996646_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996951_997332_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997542_998268_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998363_999314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999418_1000468_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000605_1001622_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003130_1003703_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003762_1004494_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004545_1005463_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006270_1009450_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010899_1011151_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1011296_1011947_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012097_1014212_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014287_1015139_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015135_1015762_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015758_1017513_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017805_1020511_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020523_1022185_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022197_1023988_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024209_1025385_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025427_1026378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026476_1027217_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027411_1029448_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029465_1030476_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030593_1031787_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031816_1032590_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032586_1033777_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033802_1034741_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034737_1037086_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1037240_1037948_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037985_1039119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039211_1039364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039395_1039944_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039962_1040448_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040625_1041564_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041566_1041884_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041929_1042874_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044554_1045205_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045258_1045594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045590_1046451_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046467_1046749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046822_1047086_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_010929591.1|1047329_1048280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	1060498	1117880	4106298	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1060498_1061515_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062345_1063353_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063349_1064993_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1064989_1065892_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066017_1066491_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066480_1067503_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067499_1068927_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069864_1070881_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071213_1072149_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072198_1074079_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074145_1074490_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074634_1075771_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075767_1076841_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076998_1078435_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078525_1079167_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079502_1080519_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080851_1083599_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083665_1085087_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085350_1086067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086151_1086469_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086509_1086923_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086924_1087284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087326_1088871_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088954_1089785_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1089819_1090974_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091016_1091889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092005_1094294_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095500_1095965_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095991_1096942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097309_1098086_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098130_1098988_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099009_1100026_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100160_1101201_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101395_1103477_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103712_1105206_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105436_1106231_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106451_1107810_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107806_1108649_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108667_1110554_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1110791_1111424_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111442_1112045_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1112048_1112210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1112196_1113147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1113949_1114750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1114793_1115780_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115919_1116933_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116929_1117880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	1153218	1218802	4106298	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153218_1155015_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155014_1155983_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156052_1156898_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156965_1157520_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157566_1158517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158615_1159248_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159412_1161695_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161849_1164546_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164671_1165160_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167570_1170441_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170486_1171701_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171930_1173358_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1173398_1174547_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174559_1175318_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175405_1176308_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176304_1177255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177384_1178368_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178422_1179145_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180623_1181979_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182059_1184435_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184599_1186675_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186736_1187537_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187638_1188601_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188588_1189344_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189451_1191089_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191156_1191894_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1191996_1192572_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192744_1193281_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1193283_1193628_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193643_1194489_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194527_1195907_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195984_1196866_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196964_1197915_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197911_1198322_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198429_1199284_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199276_1200239_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200284_1201409_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1201520_1202393_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202517_1203297_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203450_1204872_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205306_1207004_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1207032_1207155_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1207230_1208172_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208498_1209245_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209252_1210179_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210300_1211218_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211257_1212211_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212235_1212814_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214487_1215096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215173_1215527_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215610_1216600_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216802_1217753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1217851_1218802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	1381367	1447867	4106298	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1381367_1382318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382383_1382563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1382679_1383402_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383421_1384567_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385474_1386425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1386612_1387815_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1387811_1388570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1388963_1389596_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1390551_1393152_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1393139_1396559_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1396566_1397472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1397610_1398189_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1398185_1399097_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1399110_1399791_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1399992_1402032_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1402050_1403037_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1403062_1403860_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1403856_1405050_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1405046_1406009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1406026_1407067_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1407054_1407663_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1409251_1410247_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1410266_1411445_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1411455_1412373_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1412428_1413379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1413477_1414248_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1414244_1414925_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1414991_1415780_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1416026_1417043_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1417348_1418503_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1423008_1423491_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1423508_1423799_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1423925_1424636_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1424819_1425227_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1425239_1425659_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1425706_1426411_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1426476_1427898_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1427936_1428701_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1428744_1429530_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1429529_1430219_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_095593565.1|1430221_1431355_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1431372_1432395_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1432464_1434111_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1434144_1435677_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1435755_1437576_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1437696_1439316_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1439494_1440937_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1441153_1442170_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1442216_1443005_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1443027_1443297_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1443313_1444105_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1444116_1444458_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1444468_1444969_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1444961_1445972_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1445974_1446547_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1446916_1447867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	1476038	1514628	4106298	transposase,protease	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1476038_1477373_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477425_1479762_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479887_1480451_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480459_1481551_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481622_1482078_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482078_1482873_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482869_1484051_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484037_1484643_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484639_1485413_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485424_1486252_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486413_1488777_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488844_1489564_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489687_1490113_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490147_1491098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491215_1492142_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492207_1493365_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493345_1493813_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493960_1494911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494927_1495362_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495351_1495702_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495898_1497053_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497049_1498222_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498269_1499163_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499208_1499646_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499705_1500395_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500404_1501355_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501453_1502404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1502502_1503486_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1503748_1504846_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1504856_1508099_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1509120_1509765_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1509775_1510675_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1510722_1511808_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1511804_1513499_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1513532_1513691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1513677_1514628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	1794969	1852248	4106298	tRNA,transposase	Klosneuvirus(13.33%)	51	NA	NA
WP_010930522.1|1794969_1795920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796018_1798619_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798725_1799730_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799838_1801179_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801219_1802248_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802443_1802989_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1802985_1803546_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803644_1804595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804632_1805220_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805237_1805621_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1806980_1808273_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808407_1809448_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809545_1810562_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810829_1811477_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811602_1812361_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1812435_1813125_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1813142_1814027_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814023_1814803_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1814829_1815507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815795_1816548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816666_1818067_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818090_1818489_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818664_1818865_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819003_1819732_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819865_1821281_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821284_1822148_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822160_1822910_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823092_1825108_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1825089_1825638_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1825714_1826434_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1826532_1827483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1827631_1827970_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1828027_1828189_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1828220_1828421_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1828686_1831260_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1831330_1833904_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1836430_1836919_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1837010_1838162_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1838215_1839037_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1839075_1840305_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1840433_1840874_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1840818_1840998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1840984_1841935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1841931_1842405_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1842566_1843505_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1843506_1844715_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1844819_1845326_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1845328_1848190_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1848179_1849145_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1849204_1851199_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1851297_1852248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	1903497	1962767	4106298	protease,tRNA,transposase	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1903497_1904448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1904572_1905382_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1905437_1905596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1905582_1906533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1907806_1909024_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1910080_1910983_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1911059_1911932_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1912062_1912431_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1912488_1913535_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1913730_1914987_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1914991_1916329_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1916478_1917435_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1917537_1918470_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1918585_1918906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1918907_1919258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1919305_1920880_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1920932_1921877_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1921894_1922725_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1922717_1924352_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1924348_1925704_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1926610_1928188_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1928191_1929466_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1929563_1929938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1931653_1932787_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1932824_1933430_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1933426_1934245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1934316_1936941_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1936927_1937182_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1937248_1937830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1938133_1938394_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1938559_1939183_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1939182_1939956_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1939952_1941161_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1941186_1941660_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1941733_1942684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1942782_1943733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1943831_1945181_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1945946_1946702_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1946794_1949677_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1949999_1950425_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1950452_1951601_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1951597_1952104_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1952110_1953406_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1953446_1954751_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1954752_1955391_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1955393_1956554_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1956580_1957936_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1957939_1959010_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1959148_1959385_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1959472_1960579_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1960544_1961849_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1961867_1962767_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	1973007	2017330	4106298	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|1973007_1973958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1974056_1975007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1974993_1975194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1975206_1976292_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1976307_1977069_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1977065_1977989_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1978087_1978612_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1978620_1979364_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1979459_1979699_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1979712_1979865_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1979950_1981441_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1981532_1982471_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1982467_1982644_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1982646_1983309_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1984930_1985074_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1985070_1986045_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1986081_1986225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1986211_1987162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1987158_1988433_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1988530_1989730_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1989726_1990380_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1990376_1991813_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1991800_1992160_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1993132_1994083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1995128_1996994_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997251_1998772_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1998859_1999510_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2000458_2001754_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2001775_2002660_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2002758_2003634_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003623_2003980_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2004053_2005085_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005214_2005394_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005491_2006016_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006026_2006863_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006975_2007347_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007343_2007895_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2007910_2009602_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009650_2010331_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010578_2011043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011212_2012142_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012154_2012802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2012875_2014693_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2014776_2015727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2016231_2016393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2016379_2017330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2047103	2111472	4106298	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2047103_2048054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2048040_2048232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2048275_2049226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049324_2050290_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2050427_2051327_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2053921_2055409_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055419_2056616_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056688_2058008_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058004_2058880_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2058910_2060080_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060076_2060391_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060412_2061135_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061134_2061953_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061957_2062485_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2062490_2063756_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064105_2065245_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065322_2066195_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067065_2068016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067975_2068611_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068970_2070293_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2070521_2071433_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2072857_2073430_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073469_2075299_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075261_2076320_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076357_2076819_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2076903_2077650_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079140_2082371_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082437_2083769_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084021_2084396_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084498_2085677_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085687_2086278_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086388_2087195_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2087220_2088015_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089015_2089990_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090148_2090661_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2090817_2091789_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093533_2094340_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2094336_2095473_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2095588_2096353_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096466_2097237_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2097321_2098533_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098581_2098956_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2099056_2100319_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100315_2101173_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101345_2102347_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2102798_2103749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2105264_2106464_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2106832_2107069_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107132_2107300_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2107413_2109309_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2109472_2110423_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2110521_2111472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2297953	2359301	4106298	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297953_2298904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299020_2299740_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299912_2300899_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300899_2301382_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301385_2302669_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302665_2303604_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303600_2305310_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305319_2306567_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308177_2309467_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2310604_2311378_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2312039_2312783_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312857_2313598_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313793_2314630_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314680_2315451_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315500_2316553_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316549_2317176_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2317172_2318219_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318385_2319402_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319500_2320451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323191_2324481_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2324599_2325070_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325080_2326289_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326435_2326900_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326923_2327874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328858_2329632_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329628_2330627_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330711_2331488_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2331643_2333311_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2333628_2334753_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334879_2335503_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335499_2337401_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337449_2338244_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338256_2339258_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2339254_2339761_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2339753_2340602_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340699_2341242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341285_2342236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342391_2342718_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2342714_2342999_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2342995_2343475_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343471_2345100_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345096_2345441_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345440_2348374_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349532_2350483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350581_2350878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350984_2351902_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351906_2352620_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352633_2353605_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2355324_2355705_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355708_2356896_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2357334_2358057_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358350_2359301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2438884	2491998	4106298	transposase	Ectocarpus_siliculosus_virus(12.5%)	51	NA	NA
WP_005012067.1|2438884_2439835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2439854_2440760_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2440837_2441536_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2441695_2442640_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2442649_2444140_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2444136_2445204_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2445267_2446680_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2446865_2448086_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2448107_2449058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811159.1|2449156_2449807_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2449924_2451727_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2453378_2454284_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2454465_2455842_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2456008_2456749_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2456885_2457812_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|2458084_2458240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010928840.1|2458252_2458381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|2458377_2458662_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2458720_2460211_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2460455_2461055_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2461059_2461830_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2462067_2462781_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2462777_2463695_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811129.1|2463815_2464463_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930441.1|2464504_2464708_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2464732_2467012_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2467024_2467753_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2467749_2468409_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2468477_2469230_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2469411_2470362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2470460_2471411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994753.1|2471397_2471553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446216.1|2472303_2473209_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010930437.1|2473220_2474348_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|2474436_2475051_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|2475708_2476896_-	cupin	NA	NA	NA	NA	NA
WP_033446228.1|2476892_2479490_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2479744_2479960_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2480415_2480970_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930431.1|2481237_2481798_+	membrane protein	NA	NA	NA	NA	NA
WP_023853587.1|2481909_2483214_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2483210_2484722_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|2484827_2485829_+	imelysin family protein	NA	NA	NA	NA	NA
WP_010930428.1|2485809_2486931_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_077068977.1|2486854_2487043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2487029_2487980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2487976_2488603_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_003820094.1|2488668_2489514_+	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930426.1|2489617_2490217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2490213_2490978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2491047_2491998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2534306	2585478	4106298	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2534306_2535257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2535355_2536126_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2536122_2536794_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2536790_2537432_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2537444_2538365_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2538525_2539686_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2539727_2540678_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2541276_2541501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2541665_2543360_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2543481_2543751_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2543866_2544265_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2544275_2545232_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2545368_2545914_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2545934_2547884_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2548271_2549048_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2549053_2549446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2549867_2550818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2550814_2551912_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2551943_2552894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2554675_2555917_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2555928_2556702_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2556728_2557679_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2557777_2558560_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2558648_2559875_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2560600_2561986_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2562004_2562610_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2562606_2564463_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2564459_2565260_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2565274_2566468_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2566535_2567510_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2567632_2568856_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2568966_2571171_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2571465_2572125_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2572132_2572339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2572677_2573433_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2573448_2573610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2573703_2574219_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2574491_2574809_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2574996_2575245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2575523_2576879_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2576925_2578305_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2578367_2579000_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2578999_2581360_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2581401_2582361_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2582347_2583034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2583030_2583363_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2583478_2584429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2584527_2585478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2684822	2725491	4106298	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2684822_2685773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685883_2686066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686165_2686762_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2686945_2688037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688536_2688947_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2689005_2689347_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2689352_2691770_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691782_2692805_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692879_2693239_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693254_2693452_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693787_2694738_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2694724_2694886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2694932_2695382_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695378_2696329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|2696315_2696462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2696439_2697888_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2698002_2698284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2698236_2698401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698387_2699338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699582_2700296_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700418_2700646_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2700940_2701579_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2701651_2702722_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702718_2703669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704084_2704609_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704612_2704882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705080_2706142_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706225_2707860_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707861_2708665_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708693_2709653_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709656_2711171_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711207_2712212_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712643_2713114_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713149_2713761_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713791_2714415_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714495_2716028_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2716062_2717304_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717347_2718379_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718375_2719545_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719538_2720219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720380_2721223_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721385_2722357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722528_2723407_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723429_2724500_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724540_2725491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2729602	2806329	4106298	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_005013747.1|2729602_2730553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2731302_2731737_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2731729_2732965_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2732972_2733767_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2733763_2734567_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2734593_2735571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2735599_2737171_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2737181_2738003_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2739727_2741158_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2741170_2741860_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2741955_2743296_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931039.1|2743297_2743585_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_076879563.1|2743643_2743922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931040.1|2743908_2745501_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2745597_2747058_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2747280_2747892_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2751638_2752589_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2753004_2755641_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2755637_2756762_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2756758_2758141_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2758276_2758744_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2758865_2759534_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_019249399.1|2759663_2760809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2760810_2762541_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2762658_2762967_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2762979_2763792_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2764672_2766838_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_019248319.1|2766942_2767752_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
WP_010931050.1|2767791_2769396_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2769476_2770217_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2770224_2770719_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2771091_2772111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2772107_2773490_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2773522_2774383_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2775386_2776268_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2776326_2776764_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2776854_2777826_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2777864_2778809_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2778904_2779714_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2779790_2780165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2780271_2780964_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2780956_2781373_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781483_2782116_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782144_2782588_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782609_2783701_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783755_2784556_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784691_2785312_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785451_2785925_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787064_2788015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788011_2795673_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2795913_2799960_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800272_2800854_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800850_2802149_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802228_2803257_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2803180_2803531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2803517_2804468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_095593566.1|2804464_2805406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2805378_2806329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2811836	2868994	4106298	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
WP_010929591.1|2811836_2812787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2813948_2814455_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2814451_2815216_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2815231_2815516_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2815580_2816570_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2816741_2817671_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2817642_2818329_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2818362_2818908_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818952_2820218_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2820214_2821117_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2822298_2823243_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2823337_2824855_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2824896_2826525_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2826632_2827514_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2830626_2831001_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2831025_2831364_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2831407_2833042_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2833080_2834427_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2834534_2835956_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2836025_2836610_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2836712_2837663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837797_2838904_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2838914_2840012_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2840156_2841362_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2841368_2841890_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2841886_2842378_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2842374_2842626_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2842606_2843092_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2843227_2846689_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2846685_2847591_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2847600_2848032_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2848278_2848782_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2848793_2850260_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2850334_2851210_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2851206_2852214_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852681_2852987_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2853077_2853668_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853858_2854875_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2855066_2857403_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2857485_2857920_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2858018_2858969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2859067_2860018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2860014_2860809_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2860840_2861545_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2861619_2862420_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2862416_2862824_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2862820_2863462_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2863454_2865476_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2866715_2868047_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2868043_2868994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2883469	2924828	4106298	protease,transposase	uncultured_Mediterranean_phage(40.0%)	30	NA	NA
WP_010930800.1|2883469_2884420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2884750_2888572_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2888728_2889397_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2889401_2891075_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2891093_2892413_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2892417_2894769_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2894788_2896957_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2896953_2902143_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2902232_2902547_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2902774_2903020_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2903114_2903633_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2903732_2904938_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2905053_2906451_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2906567_2907146_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2907218_2908610_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2908777_2909728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2910008_2910629_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2910625_2911039_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2911035_2912079_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2912134_2912323_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2912332_2913097_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2913187_2913844_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2913935_2914694_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2914719_2916321_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2916521_2917526_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2917626_2917890_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2918007_2918784_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2919374_2920325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2922708_2923821_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2923877_2924828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	2955214	3009445	4106298	transposase	Planktothrix_phage(16.67%)	51	NA	NA
WP_005012067.1|2955214_2956165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2956151_2956397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2956285_2957182_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2959459_2961685_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2961849_2962938_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2962894_2963548_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2963595_2964393_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2964924_2965875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2965955_2967104_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2967160_2968111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2968097_2968316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2968209_2968515_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2968543_2968978_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968979_2970224_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2970220_2970931_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2970945_2971857_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2972219_2972624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2972620_2973079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2973085_2973994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973990_2974857_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2974843_2975671_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2975681_2976809_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2977886_2979125_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2979166_2980429_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2980435_2981188_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2981239_2981425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2981700_2982165_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2982196_2982856_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2983000_2985109_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2985105_2986056_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2986159_2986780_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2986883_2987624_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2988758_2989883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2989928_2990297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2990538_2991489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2992524_2993067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2993259_2993466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993452_2994403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2994399_2995365_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2995434_2996271_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|2996747_2997893_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2997954_2998905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2999097_2999880_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|2999893_3000643_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3000670_3002017_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3002042_3002972_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3003087_3003993_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3004010_3005210_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3005282_3005975_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3006023_3008450_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3008494_3009445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	3378849	3499094	4106298	tRNA,transposase	Acinetobacter_phage(20.0%)	103	NA	NA
WP_023995489.1|3378849_3379800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3380204_3380849_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3380873_3381458_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3381558_3382176_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3382178_3383894_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3383890_3384199_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3384215_3384851_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3384877_3385180_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3385280_3386135_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3386322_3386547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3386716_3386989_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3387406_3387814_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3388183_3388978_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3389078_3390314_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3390382_3391399_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3391395_3392787_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3392783_3393980_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393976_3395515_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3395511_3396771_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3398711_3399662_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3399648_3399825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3400428_3401523_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3401515_3402850_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3402803_3403487_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3403512_3404676_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3404672_3405674_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3405673_3406546_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3406542_3407292_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3407288_3408080_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3408076_3409216_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3409524_3410277_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3410310_3411093_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3411096_3411486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3412625_3413489_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3413524_3414613_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3414609_3415560_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3415546_3415960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3415913_3418892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3419818_3420697_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3421661_3422612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013039.1|3422598_3422787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3423694_3424645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424641_3425109_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425151_3425922_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3425942_3426743_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426753_3428163_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428257_3429043_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429282_3430299_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430406_3430799_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3430936_3431617_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3431621_3432620_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432688_3433639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3435143_3435845_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3435844_3437269_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3438338_3439679_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3439794_3441558_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441669_3442548_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442660_3443476_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443479_3443731_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443815_3444832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445162_3445384_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447744_3448662_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449159_3450368_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450447_3452019_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452136_3453072_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453260_3454205_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3454273_3454489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3454772_3460490_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460495_3461623_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461678_3462305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3462576_3463593_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463688_3464399_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464395_3465385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3465516_3467112_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467114_3467852_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468007_3468880_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469148_3470369_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470365_3471025_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471096_3471729_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471758_3472277_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472287_3473397_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473443_3474298_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474299_3475202_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476424_3477375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479131_3480121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480296_3481085_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481081_3482113_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482131_3482695_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482750_3484271_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484534_3485239_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485246_3485984_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486089_3486464_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486506_3487796_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487792_3488962_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3488958_3489798_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489857_3490793_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490805_3491756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491854_3492817_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492848_3493208_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493332_3494235_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494236_3496009_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496043_3496820_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498143_3499094_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	3514032	3572104	4106298	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514032_3514983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515111_3516245_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516288_3517194_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517196_3518897_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518893_3519814_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519821_3520799_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520857_3521892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3523866_3524103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3524229_3525093_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525181_3526003_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526082_3526820_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3526816_3527809_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3527922_3528585_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528629_3529778_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3532101_3533052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533392_3534343_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534440_3535391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535687_3536185_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536227_3538003_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3538049_3538877_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538883_3539618_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540787_3541582_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541871_3542462_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542495_3543824_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543898_3545044_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545155_3546154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546116_3546551_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548067_3548952_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3548948_3550154_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550150_3551011_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551123_3552914_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3552954_3553620_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553620_3553929_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554094_3555381_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3556814_3557765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559716_3560931_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561036_3562026_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562022_3562631_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562643_3563273_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563269_3563890_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3563921_3564713_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3565555_3566020_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566038_3566965_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567018_3568305_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569235_3570108_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570104_3571055_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571153_3572104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP016960	Bordetella pertussis strain D735, complete genome	4106298	4004317	4069229	4106298	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4004317_4004803_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004891_4005029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005021_4006002_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006268_4007078_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007117_4007798_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007791_4008250_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008261_4008624_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008706_4009390_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009445_4009754_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009772_4010087_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010083_4012558_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012565_4013957_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4013953_4014139_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014117_4014819_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014815_4015637_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015617_4016742_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016734_4017754_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4017959_4018994_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019094_4019886_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4019968_4020343_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020320_4021730_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021722_4023105_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023439_4025044_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4025079_4026093_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026103_4027030_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027420_4028371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028540_4029767_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029966_4030833_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030825_4031788_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031888_4032839_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4032937_4033888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033986_4034937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4034933_4036427_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036423_4039531_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039527_4042596_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042592_4043843_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044023_4044785_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044817_4045468_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045470_4046310_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046550_4047294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047376_4047724_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047821_4048664_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048708_4049596_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049622_4049811_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049908_4051366_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051352_4052879_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052897_4053365_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053364_4054387_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054507_4055248_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055302_4056403_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056404_4057595_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057714_4058731_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059049_4059721_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059717_4060626_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060837_4061485_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065336_4066413_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066423_4067233_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067322_4068096_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_153302798.1|4068115_4068292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|4068278_4069229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
