The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	0	59497	4112627	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	78681	137155	4112627	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|78681_79632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79706_80651_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80647_82522_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83869_84574_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84570_85677_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85938_86532_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86528_87716_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87778_89038_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89061_90150_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90157_91258_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91261_91837_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91840_92893_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93023_94031_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94032_95319_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95515_96319_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96315_97182_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97256_98387_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98386_99226_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100158_100761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100790_101444_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101576_102833_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102913_103780_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103855_104131_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104138_104801_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104862_105864_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105878_106427_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106484_107381_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107377_108439_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108474_109425_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110324_111518_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111599_112229_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112290_112974_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112983_114666_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114953_115301_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115391_115709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115991_117008_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117083_117884_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117880_118756_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118766_120059_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120101_121142_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121247_122069_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|122169_123120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123218_124124_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124120_124954_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125790_126801_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126797_127187_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128080_129334_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129424_131125_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131551_132199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132197_133637_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133747_134032_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134059_134938_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136204_137155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	165940	304063	4112627	transposase,tRNA,protease	Klosneuvirus(10.53%)	115	NA	NA
WP_005015810.1|165940_166891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168334_169237_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169214_169844_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170126_171557_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171590_172220_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172268_173876_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173900_174584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174665_175142_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929664.1|177413_177941_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178032_178848_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178908_179643_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179680_181759_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182008_182281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182382_183468_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183471_185376_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185372_189047_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189107_189671_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189678_190101_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190128_190548_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190576_191023_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191149_191647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191801_194072_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194147_195353_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195451_196402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196504_197140_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197136_198030_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198424_199525_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199606_199981_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200040_202905_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203049_203790_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203859_205071_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205099_206068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929699.1|207787_208111_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208215_209256_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209261_210041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210086_210383_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210408_210684_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210740_211385_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211384_212071_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212269_213052_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213102_213828_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213859_215209_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215320_216253_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216710_219506_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220099_222943_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223113_223833_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223871_224420_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224574_225474_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225498_226449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226666_227362_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227378_228791_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228903_230334_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230375_232289_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232607_233174_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233264_234266_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929591.1|234380_235331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235417_236368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236364_237315_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237413_238211_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239160_239571_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240592_241336_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241379_242423_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242593_244696_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246106_247063_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247081_247573_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247569_248925_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248925_249624_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249620_250322_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250574_251624_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251729_252671_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252667_254557_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254643_255282_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255424_256810_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256740_257277_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257428_258820_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258836_259817_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259952_260936_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261000_261900_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262006_263761_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263768_264893_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264906_265887_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266617_267568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268127_268673_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268798_270376_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270391_271546_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271559_271685_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271681_273433_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273429_275109_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275171_275720_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276862_277141_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278184_279135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279411_279573_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_162096757.1|279893_280151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280239_280689_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280698_281310_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281468_282317_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282342_283725_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283789_284431_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284570_285029_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285053_285830_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285883_287020_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287016_287967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|288065_288692_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|288714_289641_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|289649_291236_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|291232_292237_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|292436_293297_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|293328_294330_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|294400_295210_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|295287_297147_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|297275_298478_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|298591_299473_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|300975_301536_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_111735998.1|302736_303024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|303112_304063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	391894	449403	4112627	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_010929591.1|391894_392845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392981_393899_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393895_394144_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394140_395346_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395418_396414_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396436_397657_-	CoA transferase	NA	NA	NA	NA	NA
WP_054604412.1|397653_398298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400028_400838_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401142_402096_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402194_403178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403104_403806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403854_404625_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404621_405800_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405967_407674_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407670_408567_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408607_410197_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410246_411239_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411307_411907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412367_413348_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413423_414374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414462_415377_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415373_416033_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416122_417046_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417051_417507_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417503_418607_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418565_418835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418794_420414_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420410_421469_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421598_422093_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422185_423163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423358_424564_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424560_426072_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426087_427401_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427591_427771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428180_428915_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431359_432310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432441_432840_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433250_433721_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433809_434154_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434253_435654_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437442_437961_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438071_438827_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439022_440255_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440247_441033_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441099_442071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442081_443059_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443184_444357_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444383_445412_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445477_446671_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448452_449403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	591454	652645	4112627	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591454_592405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592880_593771_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593767_594589_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594788_595280_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595298_596372_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596418_597522_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597597_598218_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598238_598748_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598802_599054_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599117_600251_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600258_600645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600641_603161_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603589_603928_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603924_604431_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604492_605293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605403_606345_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606438_607974_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609653_611504_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611507_612341_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612340_613282_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613533_614505_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614646_616935_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617241_618150_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618204_619170_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619244_620906_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620977_621688_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621836_622787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623485_623869_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623926_624529_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624546_624948_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625063_625975_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625971_626553_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627347_628082_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628122_629172_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629319_629898_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630284_631262_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631355_635750_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635950_636799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636957_637770_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637825_638776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638874_639675_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639736_640120_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640131_641484_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641771_642101_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642103_642853_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643035_643956_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644002_644215_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644237_644660_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644676_645777_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645873_647391_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647466_648306_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648327_649200_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649290_650385_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650678_651629_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651703_652645_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	657969	704159	4112627	tail,terminase,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	49	NA	NA
WP_023995141.1|657969_658995_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659035_659275_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659344_660934_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660933_661482_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661562_662135_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662153_663065_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663138_664107_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664229_665303_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665307_667128_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_033446132.1|668242_668578_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668711_669362_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669383_670802_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670871_671627_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671595_672354_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672364_673246_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673262_673970_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673972_674731_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674940_676683_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676675_677200_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677239_678034_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678201_679275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679373_680324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680575_680782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680853_681465_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682019_682271_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682263_682953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683209_684160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684799_685285_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685271_686549_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686551_687970_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|687998_689054_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689059_689302_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689424_690027_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690455_691406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692080_692332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692394_692877_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692890_693079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693078_693474_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693470_693869_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693865_694288_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694295_694796_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695050_695569_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695578_695908_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695925_696216_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696241_698854_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698863_699223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699290_699824_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699820_700210_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700202_704159_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	710325	764255	4112627	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710325_712056_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712108_712537_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712539_713220_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713219_713678_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713714_714689_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714705_716022_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716053_716551_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716637_717327_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717326_718376_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718372_719167_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719335_719686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719661_720219_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721348_722299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724436_725666_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725668_727111_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727215_728361_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728392_729190_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729214_730774_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730770_733143_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733252_734356_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734355_735048_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735191_735893_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735877_736255_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736986_737937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738096_738969_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739309_739528_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739567_740947_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740988_742386_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742425_744078_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744081_744966_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744965_745907_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745985_747605_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747771_748587_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748654_749224_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|749224_750175_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750829_751927_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751960_753226_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753383_754334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754577_755168_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755183_757628_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757747_758719_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758850_759375_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759334_760285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760506_762702_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762774_763182_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763304_764255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	887891	955867	4112627	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|887891_888908_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889104_890088_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891686_893075_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893105_894095_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894205_895438_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895719_896520_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896542_898774_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899561_900008_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900029_900776_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900919_901897_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902530_903142_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903135_904353_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904493_905444_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905440_906160_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906280_908440_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908530_908800_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908888_909095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909093_909621_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909639_910419_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910586_911603_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911675_912167_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912177_913893_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915056_916007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916003_917836_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918234_918894_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919421_920102_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920383_921100_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921114_922416_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924560_927449_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927672_929025_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929053_929575_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929571_931026_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931060_931309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931414_932290_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932315_933371_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933383_934175_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934207_935578_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936754_937705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937757_937979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938138_938351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938470_939589_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939685_939901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940094_940346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940458_941409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941405_941789_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941843_943658_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943807_944635_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944680_945661_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945657_945870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945866_947048_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947211_947946_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947947_950560_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950695_952609_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953224_953635_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953732_954818_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954916_955867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	999396	1071913	4112627	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|999396_1000347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000451_1001501_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1001638_1002655_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1004163_1004736_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1004795_1005527_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1005578_1006496_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1007303_1010483_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1010479_1011862_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011931_1012183_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1012328_1012943_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1013129_1015190_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1015319_1016171_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1016167_1016794_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1016790_1018545_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1018837_1021543_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1021555_1023217_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1023229_1025020_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1025241_1026417_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1026459_1027410_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027508_1028249_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028443_1030480_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030497_1031508_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031625_1032819_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032848_1033622_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033618_1034809_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034834_1035773_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035769_1038118_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038272_1038914_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1040243_1040396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040427_1040976_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1040994_1041480_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041657_1042596_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042598_1042916_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042961_1043906_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045586_1046237_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046290_1046626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046622_1047483_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047499_1047781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047854_1048118_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048361_1049312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049610_1050348_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050783_1051107_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051141_1051702_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051822_1052698_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052710_1053658_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053759_1054053_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054079_1056137_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056151_1056652_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056725_1058432_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059295_1060348_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060400_1060790_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060798_1061431_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061530_1062547_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063377_1064385_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064381_1066025_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066021_1066909_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067049_1067523_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067512_1068535_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068531_1069959_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070896_1071913_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	1154259	1219843	4112627	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1154259_1156056_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156055_1157024_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157093_1157939_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158006_1158561_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158607_1159558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159656_1160289_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160453_1162736_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162890_1165587_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165712_1166201_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168611_1171482_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171527_1172742_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172971_1174399_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174496_1175588_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175600_1176359_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176446_1177349_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177345_1178296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178425_1179409_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179463_1180186_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181664_1183020_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183100_1185476_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185640_1187716_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1187777_1188572_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188679_1189642_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189629_1190385_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190492_1192130_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192197_1192935_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193037_1193613_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193785_1194322_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194354_1194669_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194684_1195530_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195568_1196948_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197025_1197907_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198005_1198956_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198952_1199363_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199470_1200325_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200317_1201280_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201325_1202450_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202555_1203434_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203558_1204338_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204491_1205913_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206347_1208045_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208271_1209213_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209539_1210286_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210293_1211220_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211341_1212259_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212298_1213252_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213276_1213855_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215528_1216137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216214_1216568_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216651_1217641_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1217843_1218794_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1218892_1219843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	1318979	1384408	4112627	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1318979_1319930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320698_1321337_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322226_1322673_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322754_1323456_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323456_1324224_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324220_1325459_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325458_1326385_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326487_1327603_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327618_1328569_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328922_1329504_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329500_1330334_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330544_1331858_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332034_1332916_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332935_1333787_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333839_1334928_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335038_1336166_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336400_1337012_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337110_1338061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338282_1338660_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338807_1339305_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339301_1339829_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339962_1340778_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340790_1341972_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342019_1342913_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343039_1343510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343635_1344463_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344491_1345268_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345264_1345540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345554_1346019_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346030_1346732_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346841_1347342_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347424_1348603_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350230_1350566_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350753_1352202_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352259_1352604_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352710_1353250_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353342_1354293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1354391_1355342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1355440_1355848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356080_1356512_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1356693_1357098_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358334_1358658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358660_1359548_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359580_1360006_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360077_1360431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360670_1361177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361215_1362547_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362606_1363422_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363418_1364273_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367335_1369879_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371245_1373000_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1372996_1375117_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375121_1377317_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377313_1380655_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383457_1384408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	1449006	1504493	4112627	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449006_1449957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451157_1451604_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451596_1453072_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453068_1453824_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453816_1454827_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454816_1456493_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456805_1457138_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457151_1457547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457556_1457883_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457879_1458206_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458132_1459155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459151_1459502_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459549_1459978_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1459985_1461359_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461499_1461877_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462139_1463447_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463507_1464338_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464334_1464823_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464864_1466385_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466428_1466905_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467708_1470306_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470335_1471157_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471883_1472633_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472816_1473695_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473792_1474509_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474523_1475084_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475250_1476015_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476034_1476892_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476888_1478088_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478127_1479462_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479514_1481851_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481976_1482540_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482548_1483640_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483711_1484167_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484167_1484962_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484958_1486140_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486126_1486732_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486728_1487502_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487513_1488341_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488502_1490866_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490933_1491653_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491776_1492202_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492236_1493187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493304_1494231_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494296_1495454_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495434_1495902_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496049_1497000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497016_1497451_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497440_1497791_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1497987_1499142_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499138_1500311_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500358_1501252_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501297_1501735_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501794_1502484_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502493_1503444_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1503542_1504493_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	1599189	1667272	4112627	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1599189_1599678_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1599795_1600374_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1600479_1600848_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1600946_1601897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1601903_1603016_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1603702_1604905_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1605108_1607769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1607781_1611186_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1611852_1614078_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614124_1614451_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1614501_1615110_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615208_1616159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616228_1616993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1616989_1617526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617692_1618544_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618603_1619230_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619226_1620177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620275_1621388_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621377_1622379_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622484_1623996_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1623992_1625297_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625408_1625969_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626236_1626791_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627246_1627462_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627716_1630314_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630310_1631498_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632155_1632770_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632858_1633980_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1633997_1634903_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635795_1636746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636927_1637680_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637748_1638408_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638404_1639133_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639145_1641425_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641449_1641653_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641694_1642327_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642462_1643380_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643376_1644090_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644327_1645098_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645102_1645702_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645946_1647437_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647495_1647780_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648345_1649272_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649408_1650149_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650315_1651692_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651873_1652779_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654430_1656233_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656350_1657001_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657098_1658049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1658070_1659291_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1659476_1660889_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1660952_1662020_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1662019_1663507_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1663516_1664461_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1664620_1665319_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1665396_1666302_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1666321_1667272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2004577	2077789	4112627	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_005012067.1|2004577_2005528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2005979_2006981_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007153_2008011_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008007_2009270_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009370_2009745_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2009817_2011005_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011089_2011860_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2011973_2012738_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012688_2013990_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2013986_2014793_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2016536_2017508_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017664_2018177_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018335_2019310_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020310_2021105_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021130_2021937_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022047_2022638_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022648_2023827_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023929_2024304_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024556_2025888_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025954_2029185_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030675_2031422_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031506_2031968_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032005_2033064_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033026_2034856_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034895_2035468_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036892_2037714_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038032_2039355_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039714_2040350_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040309_2041260_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042130_2043003_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043080_2044220_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044578_2045835_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045840_2046368_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046372_2047191_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047190_2047913_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047934_2048249_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048266_2049415_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049445_2050321_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050317_2051637_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051709_2052906_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052916_2054404_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2056998_2057898_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058035_2059001_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059099_2060050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060271_2061222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2061218_2061521_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2061680_2062085_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2062077_2063304_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2063300_2063747_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2063816_2064599_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2064640_2066146_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2066431_2067265_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2068702_2069524_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2069542_2070397_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2070400_2071372_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2072056_2072233_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2072718_2073669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074806_2075103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075277_2076630_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076772_2077789_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2090995	2135318	4112627	transposase	Bacillus_phage(25.0%)	44	NA	NA
WP_010929577.1|2090995_2091946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092598_2093549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093632_2095450_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095523_2096171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096183_2097113_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097282_2097747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2097994_2098675_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098723_2100415_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100430_2100982_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2100978_2101350_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101462_2102299_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102309_2102834_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102931_2103111_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103240_2104215_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104345_2104702_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104691_2105567_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105665_2106550_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106571_2107867_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108815_2109466_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2109553_2111074_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111331_2113197_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114242_2115193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115210_2115351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116165_2116525_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116512_2117949_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117945_2118599_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118595_2119789_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119892_2121167_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121163_2122114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2122280_2123255_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2123251_2123395_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2125016_2125679_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2125681_2125858_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2125854_2126793_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2126884_2128375_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2128460_2128613_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2128626_2128866_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2128961_2129705_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2129713_2130238_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2130336_2131260_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2131256_2132018_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2132033_2133119_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2133318_2134269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134367_2135318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2145558	2204827	4112627	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_010930787.1|2145558_2146458_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146476_2147781_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147746_2148853_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148940_2149177_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149315_2150386_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150389_2151745_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2151771_2152929_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152934_2153573_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2153574_2154870_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2154919_2156206_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156221_2156728_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156724_2157873_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157900_2158326_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158648_2161531_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161623_2162379_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163144_2164494_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164591_2165542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165640_2166591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166664_2167138_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167163_2168372_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168368_2169142_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169141_2169765_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169930_2170191_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170494_2171076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171142_2171397_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171383_2174008_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2174079_2174898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2174894_2175500_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2175537_2176671_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2178386_2178761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2178858_2180133_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2180136_2181714_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2182620_2183976_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2183972_2185607_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2185599_2186430_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2186447_2187392_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2187444_2189019_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2189066_2189426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2189418_2189739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2189854_2190787_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2190889_2191846_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2191995_2193333_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2193337_2194594_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2194789_2195836_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2195893_2196262_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2196392_2197265_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2197341_2198244_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2199300_2200518_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2201791_2202742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202942_2203752_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2203876_2204827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2256076	2313355	4112627	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2256076_2257027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257125_2259120_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259179_2260145_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260134_2262996_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2262998_2263505_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263609_2264818_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264819_2265758_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265919_2266393_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266389_2267340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2267450_2267891_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2268019_2269249_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2269287_2270109_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2270162_2271314_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2271405_2271894_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2274444_2276994_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2277064_2279638_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2279903_2280104_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2280135_2280297_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2280354_2280693_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2280841_2281792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2282566_2283235_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2283216_2285172_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2285414_2286164_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2286176_2287040_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2287043_2288459_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2288592_2289321_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2289459_2289660_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2289835_2290234_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2290257_2291658_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2291776_2292529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2292817_2293495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2293521_2294301_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2294297_2295182_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2295199_2295979_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2295963_2296722_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2296859_2297495_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2297762_2298779_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2298876_2299917_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2300051_2301344_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2302703_2303087_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2303104_2303692_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2303729_2304680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2304778_2305339_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2305335_2305881_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2306076_2307105_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2307145_2308486_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2308594_2309599_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2309705_2312306_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2312404_2313355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2536189	2601909	4112627	transposase,tRNA,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2536189_2538133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2538129_2539050_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539069_2539657_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2539649_2540540_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2540536_2541298_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2541303_2542188_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2542210_2544004_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2544134_2545622_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2545659_2546718_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2546717_2547218_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547230_2547830_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2547826_2548327_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548328_2549558_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2549747_2549987_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550169_2550922_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2550923_2551859_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2551940_2552927_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2552926_2553985_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554041_2554224_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554275_2554869_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2554977_2555577_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2555573_2556284_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556285_2557113_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2558929_2560171_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560182_2560956_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2560982_2561933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562031_2562814_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2562902_2564129_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2564854_2566240_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566258_2566864_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2566860_2568717_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2568713_2569514_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569528_2570722_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2570789_2571764_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2571886_2573110_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573220_2575425_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2575719_2576379_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576386_2576593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2576931_2577687_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2577957_2578473_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2578745_2579063_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579250_2579487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2579777_2581133_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581179_2582520_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582621_2583254_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583253_2585623_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585655_2586615_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586601_2587288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587284_2587617_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2587732_2588683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2588781_2589732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2589728_2591795_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2591794_2592067_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2592761_2592851_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2592850_2594635_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2594658_2596824_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2596834_2597434_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600254_2600950_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2600958_2601909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2688026	2707922	4112627	transposase,tRNA	Geobacillus_virus(33.33%)	22	NA	NA
WP_010929591.1|2688026_2688977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689087_2689270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689369_2689966_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690149_2691241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691740_2692151_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2692209_2692539_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2692556_2694974_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2694986_2696009_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696083_2696443_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696458_2696656_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2696991_2697942_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698136_2698586_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698582_2699533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2699631_2700582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700692_2702141_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2702255_2702501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702640_2703591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703835_2704549_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704671_2704899_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705193_2705832_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705940_2706975_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2706971_2707922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2785206	2863216	4112627	transposase,tRNA	Moraxella_phage(14.29%)	60	NA	NA
WP_003810909.1|2785206_2785623_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785733_2786366_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786394_2786838_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786859_2787951_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2788005_2788806_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788941_2789562_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789701_2790175_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791314_2792265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069122.1|2792261_2799923_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800163_2804210_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804522_2805104_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805100_2806399_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806478_2807507_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807766_2808717_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808713_2809664_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2809980_2810586_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810639_2811953_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812027_2812498_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812497_2813286_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813296_2814949_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931075.1|2817147_2817654_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817650_2818415_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818430_2818715_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818779_2819769_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819940_2820870_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820841_2821528_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821561_2822107_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822151_2823417_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823413_2824316_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825497_2826442_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826536_2828054_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828095_2829724_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829831_2830713_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833825_2834200_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834224_2834563_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834606_2836241_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836279_2837626_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837733_2839155_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839224_2839809_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839911_2840862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840996_2842103_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842113_2843211_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843355_2844561_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844567_2845089_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845085_2845568_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845573_2845825_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845805_2846291_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846426_2849888_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849905_2850790_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850799_2851231_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851477_2851981_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852058_2853459_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853533_2854409_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854405_2855413_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855880_2856186_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856276_2856867_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857057_2858074_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858265_2860602_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860684_2861119_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2862265_2863216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2871241	2929075	4112627	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871241_2872192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|2872290_2873241_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874947_2875214_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875921_2876260_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880812_2881415_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881511_2882801_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882858_2883590_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883586_2884390_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884386_2885475_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885471_2886401_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886549_2887695_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2887716_2888667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2888997_2892819_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2892975_2893644_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893648_2895322_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895340_2896660_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896664_2898980_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899035_2901204_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901200_2906381_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906479_2906794_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907021_2907267_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907361_2907880_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2907979_2909185_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909300_2910698_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910814_2911393_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911465_2912857_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913024_2913975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914255_2914876_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914872_2915286_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915282_2916326_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916381_2916570_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916579_2917344_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917434_2918091_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918182_2918941_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2918966_2920568_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920768_2921773_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921873_2922137_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922254_2923031_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923621_2924572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2926955_2928068_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928124_2929075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	2959461	3003152	4112627	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2959461_2960412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2960532_2961429_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963706_2965932_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966096_2967185_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967141_2967795_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967842_2968640_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969171_2970122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970202_2971351_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971407_2972358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972456_2972762_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972790_2973225_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973226_2974471_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974467_2975178_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975192_2976104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976466_2976871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976867_2977326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977332_2978241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978237_2979104_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979090_2979918_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979928_2981056_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982133_2983372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983413_2984676_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984682_2985435_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985486_2985672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985947_2986412_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986443_2987103_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987247_2989356_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989352_2990303_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990406_2991027_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991130_2991871_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993005_2994130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994175_2994544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994785_2995736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996771_2997314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997699_2998650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998646_2999555_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999681_3000518_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001030_3002140_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002201_3003152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	3407150	3470981	4112627	transposase,tRNA	Staphylococcus_phage(12.5%)	47	NA	NA
WP_005012067.1|3407150_3408101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3408867_3409962_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3409954_3411289_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3411242_3411926_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3411951_3413115_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3413111_3414113_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3414112_3414985_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3414981_3415731_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3415727_3416519_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3416515_3417655_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3417930_3418716_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3418749_3419532_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3419535_3419925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3421064_3421928_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3421963_3423052_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_019247959.1|3424351_3427330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3428256_3429135_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3431083_3432034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3432030_3432498_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3432540_3433311_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3433331_3434132_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3434142_3435552_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3435646_3436432_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3436671_3437688_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3437795_3438188_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3438325_3439006_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3439010_3439982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3440077_3441028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3442532_3443234_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3443233_3444658_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3444674_3445730_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3445726_3447067_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3447182_3448946_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3449057_3449936_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3450048_3450864_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3450867_3451119_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3451203_3452220_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3452550_3452772_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3455132_3456050_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3456547_3457756_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3457835_3459407_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3459524_3460460_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3460648_3461593_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3462160_3467878_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3467883_3469011_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3469066_3469693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3469964_3470981_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017119	Bordetella pertussis strain J160 chromosome, complete genome	4112627	3475395	3541730	4112627	transposase,tRNA	Acinetobacter_phage(33.33%)	56	NA	NA
WP_019247745.1|3475395_3476268_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3476617_3477757_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3477753_3478413_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3478484_3479117_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3479146_3479665_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3479675_3480785_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3480831_3481686_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3481687_3482590_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3483812_3484763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3486519_3487509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3487684_3488473_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3488469_3489501_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3489519_3490083_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3490138_3491659_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3491922_3492627_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3492634_3493363_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3493477_3493852_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3493894_3495184_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3495180_3496350_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3496346_3497186_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3497245_3498181_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3498193_3499144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3499242_3500205_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3500236_3500596_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3500720_3501623_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3501624_3503397_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3503431_3504208_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3505531_3506482_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3507333_3507654_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3507726_3508608_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3508724_3508967_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3509104_3509575_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3509587_3510127_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3510161_3511703_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3511801_3512707_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3512749_3514150_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3514159_3514582_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3514764_3515649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3515724_3516801_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3517107_3519210_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_077069125.1|3519252_3521322_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3521420_3522371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3522499_3523633_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3523676_3524582_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3524584_3526285_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3526281_3527202_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3527209_3528187_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815317.1|3531253_3531490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3531616_3532480_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3532568_3533390_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3533469_3534207_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3534203_3535196_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3535348_3535972_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3536016_3537165_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3539488_3540439_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3540779_3541730_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
