The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	27282	78584	4107375	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905499.1|57496_58447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	164893	301502	4107375	tRNA,protease,transposase	Klosneuvirus(10.53%)	116	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225621_226317_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226333_227746_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227858_229289_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229330_231244_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231562_232129_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232219_233221_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_162096757.1|278849_279107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_095593753.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287021_287648_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287670_288597_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288605_290192_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290188_291193_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291392_292253_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292284_293286_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293356_294166_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294243_296103_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296231_297434_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297547_298429_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299931_300492_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300551_301502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	468499	585345	4107375	tRNA,transposase	Acinetobacter_phage(22.22%)	100	NA	NA
WP_010929956.1|468499_469450_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470172_471447_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471533_472616_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472626_473439_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473475_473802_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473806_474367_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474607_475600_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475618_476614_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476629_478006_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|477998_480380_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480396_480786_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480912_481143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481247_482198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482296_483247_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483243_484116_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485046_486333_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486386_487313_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487331_487787_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|488638_489430_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489461_490082_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490078_490708_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490720_491329_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491325_492315_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492420_493635_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495586_496537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|497970_499257_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|499422_499731_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|499752_500397_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|500437_502228_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|502340_503201_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|503197_504403_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|504399_505284_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|506800_507235_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|507197_508196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|508307_509453_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|509527_510856_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|510889_511480_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|511769_512564_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|513733_514468_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|514474_515341_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|515348_517124_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|517166_517664_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|517960_518911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|519009_519960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|520300_521251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|523574_524723_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|524767_525391_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|525543_526536_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|526532_527270_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|527349_528171_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|528259_529123_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|529249_529486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|531460_532495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|532553_533531_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|533538_534459_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|534455_536156_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|536158_537064_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|537107_538241_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|538369_539320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|539418_541488_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|541530_543633_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|543939_545016_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|545091_545976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|546158_546581_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|546590_547991_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|548033_548939_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|549037_550579_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|550613_551153_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|551165_551636_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|551773_552016_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|552132_553014_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|553086_553407_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|554258_555209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|556532_557309_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|557343_559116_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|559117_560020_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|560144_560504_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|560535_561498_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|561596_562547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|562559_563495_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|563554_564394_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|564390_565560_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|565556_566846_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|566888_567263_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|567377_568106_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|568113_568818_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|569081_570602_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|570657_571221_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|571239_572271_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|572267_573056_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|573231_574221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|575977_576928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|578150_579053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|579054_579909_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|579955_581065_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|581075_581594_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|581623_582256_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|582327_582987_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|582983_584123_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|584472_585345_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 4
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	589759	654640	4107375	tRNA,transposase	Pandoravirus(12.5%)	49	NA	NA
WP_010931363.1|589759_590776_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|591047_591674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|591729_592857_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|592862_598580_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|599147_600092_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|600280_601216_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|601333_602905_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|602984_604193_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|604690_605608_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|607968_608190_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|608520_609537_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|609621_609873_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|609876_610692_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|610804_611683_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|611794_613558_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|613673_615014_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931360.1|615010_616066_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010927010.1|616082_617507_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|617506_618208_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|619712_620663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|620758_621730_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|621734_622415_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|622552_622945_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|623052_624069_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|624308_625094_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|625188_626598_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|626608_627409_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|627429_628200_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|628242_628710_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|628706_629657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|630739_631690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632654_633533_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634459_637438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|637791_638742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638738_639827_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639862_640726_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641865_642255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642258_643041_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643074_643860_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644135_645275_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645271_646063_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646059_646809_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646805_647678_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647677_648679_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648675_649839_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649864_650548_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650501_651836_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651828_652923_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653689_654640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	673551	750860	4107375	tRNA,integrase,protease,transposase	Bacillus_phage(20.0%)	59	720688:720706	740576:740594
WP_023995489.1|673551_674502_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674600_676076_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677663_678551_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678553_679495_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679540_681106_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682883_684209_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684391_685849_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685812_686310_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686340_687312_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|687364_687796_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687925_688594_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689322_690426_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|690531_691806_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691817_692843_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692844_694215_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|694215_695352_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695398_697324_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697320_698442_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698438_699593_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699589_700720_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700727_702293_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702299_703682_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703960_704572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704663_706079_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706096_706807_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706803_708126_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708205_710167_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710292_711606_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711714_713013_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713195_714104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714113_714323_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714334_716014_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716115_717069_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717159_717987_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717985_719872_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719868_720468_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720516_721416_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720688:720706	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721624_722575_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722697_723312_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723440_724037_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724033_724816_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724888_725980_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726259_727387_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727728_728775_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729285_732042_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732043_734995_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735010_736222_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736218_736419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|736405_737356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737372_737867_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737870_738128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738671_739583_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739664_739949_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_010929969.1|740732_741683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740576:740594	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742101_744666_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744710_746564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746896_748468_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749736_749892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749909_750860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	1005146	1099183	4107375	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1005146_1006097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006199_1006862_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006956_1007127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007479_1008481_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008483_1009680_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009700_1010504_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1010584_1010881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010911_1011475_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011515_1012373_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012380_1013130_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013151_1014024_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014052_1014832_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014865_1015663_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018317_1018710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018703_1019564_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019567_1020530_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021306_1021996_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022856_1023807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024156_1025026_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025096_1025792_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025781_1026291_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026287_1027508_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027455_1028358_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029244_1030531_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030569_1031943_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031981_1032683_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032981_1033971_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034071_1034533_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034548_1035097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1035238_1036714_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036819_1037911_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037914_1038697_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038706_1039495_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040620_1041055_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041051_1042062_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042105_1043032_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043318_1043687_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1043739_1043886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1043903_1044854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044898_1047325_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047373_1048066_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048138_1049338_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049355_1050261_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050376_1051306_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051331_1052678_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1052690_1053455_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1053468_1054251_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054443_1055394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055455_1056565_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057077_1057914_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1058040_1058949_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058945_1059896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1059913_1060084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060281_1060824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061859_1062810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063051_1063420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063465_1064590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1065724_1066465_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066568_1067189_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067292_1068243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068239_1070348_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070492_1071152_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071183_1071648_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071923_1072109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072160_1072913_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072919_1074182_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074223_1075462_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076539_1077667_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077677_1078505_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078491_1079358_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080724_1081129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081220_1082171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1082188_1082353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1082540_1083452_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083466_1084177_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084173_1085418_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085419_1085854_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085882_1086188_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086286_1087237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1087293_1088442_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088522_1089473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090004_1090802_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090849_1091503_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091459_1092548_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092712_1094938_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097215_1098112_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1098065_1098215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1098232_1099183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	1129569	1199490	4107375	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129569_1130520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130576_1131689_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134072_1135023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135613_1136390_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136507_1136771_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136871_1137876_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138076_1139678_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139703_1140462_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140553_1141210_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141300_1142065_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142074_1142263_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142318_1143362_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143358_1143772_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143768_1144389_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144669_1145620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145787_1147179_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147251_1147830_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147946_1149344_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149459_1150665_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150764_1151283_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151377_1151623_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151850_1152165_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1152263_1157444_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157440_1159609_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159664_1161980_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161984_1163304_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163322_1164996_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165000_1165669_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165825_1169647_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1169801_1169960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1169977_1170928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170949_1172095_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172243_1173173_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173169_1174258_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174254_1175058_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175054_1175786_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175843_1177133_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177229_1177832_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182384_1182723_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183430_1183697_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185403_1186354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186350_1187682_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188942_1190943_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190935_1191577_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191573_1191981_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191977_1192778_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192852_1193557_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193588_1194383_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194379_1195330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1195428_1195863_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1195945_1198282_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010931363.1|1198473_1199490_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	1246884	1323746	4107375	tRNA,transposase	Bacillus_virus(25.0%)	57	NA	NA
WP_010927663.1|1246884_1247835_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1247831_1248782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1249042_1250071_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1250150_1251449_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1251445_1252027_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1252339_1256386_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1256626_1264288_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1264284_1265235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1266374_1266848_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1266987_1267608_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1267743_1268544_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1268598_1269690_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1269711_1270155_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1270183_1270816_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1270926_1271343_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1271335_1272028_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1272134_1272509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1272585_1273395_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1273490_1274435_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1274473_1275445_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1275535_1275973_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1276031_1276913_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1277916_1278777_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1278809_1280192_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1280188_1281208_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1281580_1282075_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1282082_1282823_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1282903_1284508_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1284547_1285336_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1285461_1287627_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1288507_1289320_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1289332_1289641_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1289758_1291489_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1291490_1292693_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1292765_1293434_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1293555_1294023_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1294158_1295541_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1295537_1296662_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1296658_1299295_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1299710_1300661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1304407_1305019_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1305241_1306702_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1306798_1308391_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_162291322.1|1308744_1309002_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1309003_1310344_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1310439_1311129_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1311141_1312572_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1314296_1315118_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1315128_1316700_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1316728_1317706_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1317732_1318536_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1318532_1319327_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1319334_1320570_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1320583_1320997_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247980.1|1321307_1321625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1321746_1322697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1322795_1323746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	1327857	1368526	4107375	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1327857_1328808_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1328848_1329919_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1329941_1330820_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1330991_1331963_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1332125_1332968_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1333129_1333810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1333803_1334973_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1334969_1336001_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1336068_1337286_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1337320_1338853_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1338933_1339557_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1339587_1340199_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1340234_1340705_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1341136_1342141_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1342177_1343692_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1343695_1344655_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1344683_1345487_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1345488_1347123_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1347206_1348268_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1348466_1348736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1348739_1349264_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_005012067.1|1349679_1350630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1350626_1351661_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1351769_1352408_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1352702_1352930_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1353052_1353766_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931070.1|1354010_1354961_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1355100_1355346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1355460_1356909_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1357019_1357970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1357966_1358416_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1358610_1359561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1359896_1360094_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1360109_1360469_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1360543_1361566_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1361578_1363996_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1364013_1364343_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1364401_1364812_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1365311_1366403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1366586_1367183_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1367282_1367465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1367575_1368526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	1448203	1501382	4107375	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1448203_1449154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1449171_1449324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1449320_1449674_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449686_1450049_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450090_1450516_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450718_1451975_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452173_1453154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453303_1454545_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454643_1455594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455602_1456298_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459118_1459718_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459728_1461894_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461917_1463702_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463701_1463791_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464485_1464758_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464757_1466824_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466820_1467771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1467886_1468219_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1468215_1468902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1468888_1469848_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1469880_1472250_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1472249_1472882_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1472983_1474324_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1474370_1475726_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1476016_1476253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1476440_1476758_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1477030_1477546_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1477816_1478572_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1478910_1479117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1479124_1479784_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1480078_1482283_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1482393_1483617_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1483739_1484714_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1484781_1485975_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1485989_1486790_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1486786_1488643_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1488639_1489245_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1489263_1490649_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1491374_1492601_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1492689_1493472_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1493570_1494521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1494547_1495321_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1495332_1496574_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1498355_1499306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1499337_1500435_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_010931070.1|1500431_1501382_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	1543231	1611316	4107375	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1543231_1543720_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1543837_1544416_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1544521_1544890_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1544988_1545939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1545945_1547058_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1547744_1548947_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1549150_1551811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1551823_1555228_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1555895_1558121_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1558167_1558494_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1558544_1559153_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1559251_1560202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1560271_1561036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1561032_1561569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1561735_1562587_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1562646_1563273_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1563269_1564220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1564318_1565431_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1565420_1566422_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1566527_1568039_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1568035_1569340_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1569451_1570012_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1570279_1570834_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1571289_1571505_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1571759_1574357_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1574353_1575541_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1576198_1576813_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1576901_1578023_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1578040_1578946_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1579838_1580789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1580970_1581723_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1581791_1582451_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1582447_1583176_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1583188_1585468_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1585492_1585696_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1585737_1586370_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1586505_1587423_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1587419_1588133_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1588370_1589141_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1589145_1589745_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1589989_1591480_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1591538_1591823_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1592388_1593315_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1593451_1594192_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1594358_1595735_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1595916_1596822_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1598473_1600276_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1600393_1601044_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1601142_1602093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1602114_1603335_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1603520_1604933_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1604996_1606064_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1606063_1607551_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1607560_1608505_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1608664_1609363_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1609440_1610346_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1610365_1611316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	1647265	1702805	4107375	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1647265_1648216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1648274_1649048_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1649040_1650597_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1650593_1651544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1652870_1653473_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1653712_1654414_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1654407_1655190_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1655374_1656325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1656423_1657161_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1657350_1658109_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1658155_1659145_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1659322_1660291_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1661830_1662799_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1662807_1663749_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1664222_1665233_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1665223_1666738_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1666734_1668081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1668083_1669118_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1669167_1670793_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1671345_1672296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1672400_1673348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1673401_1675216_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1675208_1675883_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_077084135.1|1676012_1679036_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1679049_1679349_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1679663_1680287_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1680530_1681400_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1681377_1682322_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1682407_1683334_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1683446_1684226_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1684216_1685413_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1685443_1686394_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1686615_1687305_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1687369_1688125_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1688176_1689169_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1689178_1690132_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1690247_1691210_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1692611_1693040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1693036_1693987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1694280_1695003_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1695441_1696629_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1696632_1696983_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1698732_1699704_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1699717_1700431_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1700435_1701353_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1701459_1701756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1701854_1702805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	1935567	2005219	4107375	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1935567_1938225_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1938302_1939505_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1939501_1940014_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1940136_1940574_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1940850_1941801_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1941899_1942850_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1943013_1944909_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1945022_1945190_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1945253_1945490_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1945858_1947010_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1948573_1949524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1949975_1950977_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1951149_1952007_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1952003_1953266_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1953366_1953741_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1953813_1955001_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1955085_1955856_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1955969_1956734_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1956684_1957986_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1957982_1958789_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1960533_1961505_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1961661_1962174_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1962332_1963307_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1964307_1965102_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1965127_1965934_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1966044_1966635_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1966645_1967824_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1967926_1968301_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1968553_1969885_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1969951_1973182_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1974672_1975419_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1975503_1975965_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1976002_1977061_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1977023_1978853_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1978892_1979465_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1980889_1981711_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1982029_1983352_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1983711_1984347_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1984306_1985257_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1986127_1987000_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1987077_1988217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1988575_1989832_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1989837_1990365_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1990369_1991188_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1991187_1991910_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1991931_1992246_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1992263_1993412_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1993442_1994318_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1994314_1995634_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1995706_1996903_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1996913_1998401_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2000995_2001895_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2002032_2002998_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2003096_2004047_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2004268_2005219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	2016715	2067159	4107375	transposase	Erysipelothrix_phage(16.67%)	46	NA	NA
WP_005013747.1|2016715_2017666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2018802_2019099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2019273_2020626_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2020768_2021785_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2023764_2024778_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2024864_2025770_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2025926_2026271_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2026428_2026887_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2026900_2029117_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2029113_2030175_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2030203_2031178_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2031129_2031948_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2031960_2032569_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2032743_2033139_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2033157_2034597_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2034625_2034973_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2034991_2035942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2036594_2037545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037643_2038594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038677_2040495_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040568_2041216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041228_2042158_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042327_2042792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043039_2043720_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043768_2045460_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045475_2046027_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046023_2046395_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046507_2047344_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047354_2047879_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2047976_2048156_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048285_2049260_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049390_2049747_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049736_2050612_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050710_2051595_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051616_2052912_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053860_2054511_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2054598_2056119_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056376_2058242_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059287_2060238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060255_2060396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061210_2061570_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061557_2062994_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2062990_2063644_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063640_2064834_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2064937_2066212_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066208_2067159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	2078363	2119054	4107375	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2078363_2079314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079412_2080363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2080322_2080736_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2081020_2081320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2081729_2084012_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2084697_2086728_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2086747_2086960_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2087237_2087777_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2087890_2089186_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2089262_2090420_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2090603_2091503_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2091521_2092826_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2092791_2093898_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2093985_2094222_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2094360_2095431_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2095434_2096790_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2096816_2097974_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2097979_2098618_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2098619_2099915_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2099964_2101251_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2101266_2101773_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2101769_2102918_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2102945_2103371_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2103693_2106576_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2106668_2107424_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2108189_2109539_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2109637_2110588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2110686_2111637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111710_2112184_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112209_2113418_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113414_2114188_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114187_2114811_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2114976_2115237_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115540_2116122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116188_2116443_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116429_2119054_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	2146837	2212386	4107375	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2146837_2147788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2147988_2148798_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2148922_2149873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2149869_2150763_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2150887_2151082_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2151081_2151423_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2151432_2153295_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2153424_2153937_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2153939_2154263_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2154264_2154675_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2154712_2155924_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2155941_2156454_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2156669_2157161_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2157413_2159450_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2159527_2160730_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2160858_2161509_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2163066_2164017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164587_2164800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2164817_2165549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165583_2166225_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166217_2166886_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169098_2169875_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2169896_2171054_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171050_2171482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2171478_2172276_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172295_2172697_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172763_2173735_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2173800_2175024_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175251_2176202_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176325_2178779_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2178967_2180272_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180376_2181030_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181032_2182343_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2182521_2183100_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183211_2183412_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183757_2184324_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184407_2184611_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2184917_2185238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185279_2185561_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185635_2186892_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187274_2187604_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189174_2189996_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2189995_2191135_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191141_2192038_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2192052_2193960_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194319_2196932_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2196984_2199285_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199281_2200490_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2200751_2201126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201122_2202073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202171_2204166_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204225_2205191_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205180_2208042_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208044_2208551_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208655_2209864_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2209865_2210804_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2210965_2211439_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211435_2212386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	2506031	2564274	4107375	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2506031_2506982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507461_2508118_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930386.1|2509801_2510431_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510642_2511737_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511881_2512694_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2512697_2514281_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2514451_2515582_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515768_2516845_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2516926_2517577_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517591_2518995_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519278_2520097_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2520093_2520798_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521697_2522813_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522846_2523221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523243_2524401_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524413_2524647_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525281_2528251_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528265_2528475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528626_2529256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2529252_2531310_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531366_2532047_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532043_2532604_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532610_2533708_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533860_2534454_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534450_2535743_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535756_2536299_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536308_2537145_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537178_2538240_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538281_2539334_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539349_2539652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539793_2540744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2540761_2540926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2540922_2542617_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542613_2543699_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543746_2544646_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544656_2545301_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546322_2549565_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549575_2550730_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2550956_2551919_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552017_2552968_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553066_2554017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554026_2554716_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554775_2555213_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555258_2556152_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556199_2557372_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557368_2558523_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2558719_2559070_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559059_2559494_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559510_2560461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560608_2561076_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561056_2562214_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562279_2563206_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563323_2564274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	2606554	2673054	4107375	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606554_2607505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607874_2608447_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608449_2609460_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609452_2609953_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2609963_2610305_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2610373_2611108_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611124_2611394_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611416_2612205_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612251_2613268_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613484_2614927_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615105_2616725_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616845_2618666_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618744_2620277_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2620310_2621957_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622026_2623049_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623066_2624200_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624202_2624892_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624891_2625677_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625720_2626485_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626523_2627945_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628010_2628715_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628762_2629182_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629194_2629602_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629785_2630496_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630622_2630913_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2630930_2631413_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635918_2637073_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637378_2638395_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638641_2639430_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639496_2640177_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640173_2640944_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641042_2641993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642048_2642966_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2642976_2644155_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644174_2645170_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646758_2647367_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647354_2648395_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648412_2649375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649371_2650565_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650561_2651359_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651384_2652371_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652389_2654429_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2654630_2655311_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655324_2656236_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656232_2656811_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2656949_2657855_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657862_2661282_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661269_2663870_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664825_2665458_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665851_2666610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2666606_2667809_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2667996_2668947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669854_2671000_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2670986_2671742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671858_2672038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672103_2673054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	2835619	2901202	4107375	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2835619_2836570_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2836668_2837619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852977.1|2837636_2837825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930231.1|2837821_2838811_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2838894_2839248_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2839325_2839934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2841607_2842186_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2842210_2843164_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2843203_2844121_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2844242_2845169_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2845176_2845923_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2846249_2847191_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2847417_2849115_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2849549_2850971_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2851124_2851904_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2852028_2852907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2853012_2854137_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930219.1|2855136_2855991_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2856098_2856509_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2856505_2857456_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857554_2858436_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858513_2859893_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2859931_2860777_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860792_2861107_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861139_2861676_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861848_2862424_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862526_2863264_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863331_2864969_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865076_2865832_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865819_2866782_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866889_2867684_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867745_2869821_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2869985_2872361_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872441_2873797_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875275_2875998_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876052_2877036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877165_2878116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878112_2879015_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879102_2879861_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879873_2880965_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881062_2882490_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882719_2883934_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2883979_2886850_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889260_2889749_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889874_2892571_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892725_2895008_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895172_2895805_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895903_2896854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896900_2897455_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897522_2898368_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898437_2899406_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899405_2901202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	2918772	2975980	4107375	transposase,tRNA,holin	Catovirus(22.22%)	49	NA	NA
WP_010930190.1|2918772_2920293_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920335_2920638_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920634_2921267_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921345_2923211_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923207_2924002_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924030_2925146_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926050_2926929_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926928_2927753_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927920_2928871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929083_2931933_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931914_2932643_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932783_2934247_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934243_2934615_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934632_2935946_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935982_2936441_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2936395_2936536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2936553_2937504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937500_2938514_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938653_2939640_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939998_2940706_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941286_2942237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942388_2942991_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943009_2943642_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943686_2943938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943879_2945766_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945784_2946627_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946623_2947982_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948202_2948997_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949227_2950721_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2950956_2953038_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953232_2954273_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954407_2955424_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955445_2956303_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956347_2957124_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2957336_2957474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2957491_2958442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958468_2958933_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960139_2962428_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962544_2963417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963459_2964614_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964648_2965479_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965562_2967107_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967149_2967509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967510_2967924_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2967964_2968282_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968366_2969083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969346_2970768_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_010930742.1|2972072_2973023_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2974963_2975980_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	2984601	3057118	4107375	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_023853536.1|2984601_2985618_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986555_2987983_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987979_2989002_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988991_2989465_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989605_2990493_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990489_2992133_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2992129_2993137_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2993967_2994984_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995083_2995716_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995724_2996114_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996166_2997219_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998082_2999789_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999862_3000363_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000377_3002435_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002461_3002755_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002856_3003804_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003816_3004692_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004812_3005373_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005407_3005731_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006166_3006904_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007202_3008153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3008396_3008660_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3008733_3009015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3009031_3009892_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3009888_3010224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3010277_3010928_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3012608_3013553_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3013598_3013916_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3013918_3014857_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3015034_3015520_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3015538_3016087_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3016118_3016271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3017600_3018242_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3018396_3020745_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3020741_3021680_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3021705_3022896_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3022892_3023666_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3023695_3024889_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3025006_3026017_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3026034_3028071_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3028265_3029006_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3029104_3030055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030097_3031273_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031494_3033285_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3033297_3034959_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3034971_3037677_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3037969_3039724_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039720_3040347_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040343_3041195_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3041324_3043385_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043571_3044186_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044331_3044583_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3044652_3046035_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046031_3049211_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050018_3050936_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050987_3051719_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051778_3052351_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053859_3054876_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055013_3056063_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056167_3057118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	3076518	3141458	4107375	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3076518_3077469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077567_3078152_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078186_3079176_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079172_3080114_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080110_3081331_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081373_3081688_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081879_3082239_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3082240_3083956_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084143_3084815_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084829_3086158_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086154_3087054_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087140_3088226_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3088218_3089349_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3089351_3092033_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092403_3092985_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3093110_3093836_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093832_3094510_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094725_3095907_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096679_3096862_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096891_3097842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097971_3098364_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098640_3099552_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099676_3100651_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100647_3101598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3101696_3102782_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3102879_3103290_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3103905_3105819_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3105954_3108567_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3108568_3109303_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3109466_3110648_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3110644_3110857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3110853_3111834_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3111879_3112707_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3112856_3114671_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3114725_3115109_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3115105_3116056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3116168_3116420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3116613_3116829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3116925_3118044_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3118163_3118376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3118535_3118757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3118809_3119760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3120936_3122307_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3122339_3123131_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3123143_3124199_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3124224_3125100_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3125205_3125454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3125488_3126943_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3126939_3127461_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3127489_3128842_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3129065_3131954_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3134098_3135400_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3135414_3136131_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3136412_3137093_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3137620_3138280_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3138678_3140511_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3140507_3141458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	3233080	3302083	4107375	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3233080_3234031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234027_3235047_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235056_3237765_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237912_3238569_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238667_3239618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239765_3240659_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240858_3242553_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242587_3243514_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243582_3244680_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244698_3245562_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245573_3246356_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246352_3247471_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247467_3249000_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249040_3250048_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250192_3250915_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3250930_3251953_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252269_3253004_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253088_3254834_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254830_3255583_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255627_3256584_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256672_3257239_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257246_3258107_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258136_3258865_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_023998704.1|3258896_3259580_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260417_3261332_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261396_3262305_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262395_3263820_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263821_3265144_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265140_3267279_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267356_3272477_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272577_3272886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3272955_3273513_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273528_3275010_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275064_3276918_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277180_3278518_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278552_3280550_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280567_3282616_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282746_3283613_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3283881_3284847_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3284961_3286110_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286534_3286846_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286879_3287140_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287289_3288423_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288493_3289630_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289795_3290590_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290652_3291096_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291211_3292162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3292284_3292692_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292764_3294960_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295181_3296132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296091_3296616_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296747_3297719_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297838_3300283_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300298_3300889_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301132_3302083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	3317529	3417642	4107375	tail,terminase,protease,transposase,tRNA	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3317529_3318480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319211_3319589_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319573_3320275_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320418_3321111_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321110_3322214_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322323_3324696_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324692_3326252_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326276_3327074_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327105_3328251_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328355_3329798_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329800_3331030_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333167_3334118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335247_3335805_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3335780_3336131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336299_3337094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337090_3338140_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338139_3338829_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3338915_3339413_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339444_3340761_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3340777_3341752_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3341788_3342247_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342246_3342927_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3342929_3343358_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343410_3345141_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345206_3345779_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345759_3346446_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346801_3347473_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347801_3348023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348022_3348304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348300_3348816_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348815_3349367_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349345_3349588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349592_3350405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350404_3350668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350708_3350906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350886_3351303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351307_3355264_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355256_3355646_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355642_3356176_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356243_3356603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356612_3359225_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359250_3359541_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359558_3359888_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359897_3360416_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360670_3361171_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361178_3361601_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361597_3361996_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361992_3362388_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3362387_3362576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362589_3363072_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363134_3363386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364060_3365011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365439_3366042_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366164_3366407_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366412_3367468_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367496_3368915_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368917_3370195_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370181_3370667_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371306_3372257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3372274_3372496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3372513_3373203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373195_3373447_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3374001_3374613_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374684_3374891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3375142_3376093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376191_3377265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377432_3378227_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378266_3378791_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3378783_3380526_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380735_3381494_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381496_3382204_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382220_3383102_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383112_3383871_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3383839_3384595_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384664_3386083_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386104_3386755_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3386888_3387224_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387312_3388263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388339_3390160_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390164_3391238_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391360_3392329_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392402_3393314_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393332_3393905_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3393985_3394534_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394533_3396123_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396192_3396432_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396472_3397498_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397563_3398745_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398841_3399294_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399303_3400644_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3400960_3401998_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402379_3402739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402822_3403764_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403838_3404789_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405082_3406177_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3406267_3407140_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407161_3408001_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408076_3409594_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409690_3410791_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410807_3411230_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3411252_3411465_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411511_3412432_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412614_3413364_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413366_3413696_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3413983_3415336_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3415347_3415731_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415792_3416593_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416691_3417642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017121	Bordetella pertussis strain J172 chromosome, complete genome	4107375	4006443	4071355	4107375	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006443_4006929_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007017_4007155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007147_4008128_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008394_4009204_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009243_4009924_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009917_4010376_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010387_4010750_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010832_4011516_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011571_4011880_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011898_4012213_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012209_4014684_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014691_4016083_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016079_4016265_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016243_4016945_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016941_4017763_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017743_4018868_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018860_4019880_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020085_4020976_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021220_4022012_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022094_4022469_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022446_4023856_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023848_4025231_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025565_4027170_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027247_4028219_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028229_4029156_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029546_4030497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030666_4031893_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032092_4032959_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032951_4033914_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034014_4034965_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035063_4036014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036112_4037063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037059_4038553_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038549_4041657_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041653_4044722_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044718_4045969_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046149_4046902_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046943_4047588_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047596_4048577_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048676_4049420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049502_4049850_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049947_4050790_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050834_4051722_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051748_4051937_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052034_4053492_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053478_4055005_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055023_4055491_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055490_4056513_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056633_4057374_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057428_4058529_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058530_4059721_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059840_4060857_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061175_4061847_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061843_4062752_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062963_4063611_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067471_4068539_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068549_4069359_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069448_4070222_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_162291321.1|4070222_4070387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4070404_4071355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
