assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002302315.1_ASM230231v1	NZ_CP023346	Escherichia coli strain ETEC-2265 chromosome, complete genome	1	45373-45504	1	PILER-CR	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA	NA|274aa|up_9|NZ_CP023346.1_31564_32386_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_8|NZ_CP023346.1_32841_33990_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_7|NZ_CP023346.1_34007_37229_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_6|NZ_CP023346.1_37489_37885_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_5|NZ_CP023346.1_37970_38561_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_4|NZ_CP023346.1_38566_39352_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_3|NZ_CP023346.1_39460_41014_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_2|NZ_CP023346.1_41087_42305_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|NZ_CP023346.1_42433_43576_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|NZ_CP023346.1_43606_45121_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|NZ_CP023346.1_45594_46365_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|NZ_CP023346.1_46379_47321_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|NZ_CP023346.1_47371_48658_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|NZ_CP023346.1_48654_48942_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|177aa|down_4|NZ_CP023346.1_50438_50969_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_5|NZ_CP023346.1_50961_52824_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_6|NZ_CP023346.1_53015_53495_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|281aa|down_7|NZ_CP023346.1_53572_54415_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|down_8|NZ_CP023346.1_54421_54799_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|down_9|NZ_CP023346.1_54801_55623_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_002302315.1_ASM230231v1	NZ_CP023346	Escherichia coli strain ETEC-2265 chromosome, complete genome	2	578779-578875	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA	NA|454aa|up_9|NZ_CP023346.1_566648_568010_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP023346.1_568066_569368_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP023346.1_569389_570535_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP023346.1_570663_571449_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP023346.1_571459_572695_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP023346.1_572716_573766_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP023346.1_574082_575750_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP023346.1_575759_577019_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP023346.1_577029_577845_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP023346.1_577841_578735_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP023346.1_578939_580007_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP023346.1_580003_580513_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP023346.1_580630_581353_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP023346.1_581355_581850_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP023346.1_582023_583409_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP023346.1_583444_583966_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP023346.1_584073_584286_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP023346.1_584287_585154_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP023346.1_585634_586177_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP023346.1_586396_587089_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_002302315.1_ASM230231v1	NZ_CP023346	Escherichia coli strain ETEC-2265 chromosome, complete genome	3	818301-818446	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA|56aa|down_3|NZ_CP023346.1_821229_821397_-,NA|201aa|down_4|NZ_CP023346.1_821639_822242_+,NA|94aa|down_6|NZ_CP023346.1_822772_823054_-	NA|50aa|up_9|NZ_CP023346.1_807281_807431_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP023346.1_807596_808370_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP023346.1_808369_809059_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP023346.1_809061_810120_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP023346.1_810120_810939_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP023346.1_811093_812089_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP023346.1_812129_813083_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP023346.1_813266_814319_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP023346.1_814394_815828_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP023346.1_816010_818272_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP023346.1_818505_819789_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|357aa|down_1|NZ_CP023346.1_819923_820994_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|73aa|down_2|NZ_CP023346.1_820971_821190_-	pfam07825, Exc, Excisionase-like protein	NA|56aa|down_3|NZ_CP023346.1_821229_821397_-	NA	NA|201aa|down_4|NZ_CP023346.1_821639_822242_+	NA	NA|74aa|down_5|NZ_CP023346.1_822452_822674_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|94aa|down_6|NZ_CP023346.1_822772_823054_-	NA	NA|64aa|down_7|NZ_CP023346.1_823064_823256_-	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|61aa|down_8|NZ_CP023346.1_823228_823411_-	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|227aa|down_9|NZ_CP023346.1_823407_824088_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain
GCF_002302315.1_ASM230231v1	NZ_CP023346	Escherichia coli strain ETEC-2265 chromosome, complete genome	4	3119491-3119824	1,3,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	27,29,29	0	0	NA	NA	I-E:I-E:I-E	5,4,3	5	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA	NA|254aa|up_9|NZ_CP023346.1_3111364_3112126_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP023346.1_3112106_3113156_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP023346.1_3113152_3113632_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP023346.1_3113631_3114342_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP023346.1_3114360_3114672_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP023346.1_3114865_3115189_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP023346.1_3115238_3115844_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP023346.1_3115843_3117271_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP023346.1_3117272_3118181_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP023346.1_3118432_3119470_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP023346.1_3119920_3120214_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP023346.1_3120210_3121134_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP023346.1_3121130_3121781_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP023346.1_3121762_3122509_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP023346.1_3122519_3123575_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP023346.1_3123586_3124123_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP023346.1_3124119_3125682_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|934aa|down_7|NZ_CP023346.1_3125779_3128581_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP023346.1_3128817_3128970_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP023346.1_3129234_3129969_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002302315.1_ASM230231v1	NZ_CP023346	Escherichia coli strain ETEC-2265 chromosome, complete genome	5	3145669-3146185	4,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,7	8	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA|47aa|down_1|NZ_CP023346.1_3147334_3147475_+	NA|424aa|up_9|NZ_CP023346.1_3134312_3135584_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP023346.1_3135574_3135835_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP023346.1_3135851_3136427_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP023346.1_3136574_3137435_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP023346.1_3137431_3138211_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP023346.1_3138188_3139526_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP023346.1_3139619_3141074_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP023346.1_3141143_3141929_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP023346.1_3142247_3143525_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP023346.1_3143551_3145030_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP023346.1_3146524_3147196_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP023346.1_3147334_3147475_+	NA	NA|291aa|down_2|NZ_CP023346.1_3147488_3148361_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP023346.1_3148420_3149719_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP023346.1_3149806_3151444_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP023346.1_3151671_3152463_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP023346.1_3152533_3152869_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP023346.1_3152868_3153117_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP023346.1_3153194_3155429_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP023346.1_3155476_3156778_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
