assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002302375.1_ASM230237v1	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1	998314-998607	1,1,2	PILER-CR,CRISPRCasFinder,CRISPRCasFinder	no		RT,csa3	Orphan	TCGGCGGCAGCGGCGGTGCGGGCGGCA,TCGGCGGCGGCGGCGGTGCGGGCGGCA,TCGGCGGCGGCGGCGGTGCGGGCGGCA	27,27,27	0	0	NA	NA	NA:NA:NA	3,2,2	3	Orphan	DEDDh,WYL,cas3,csa3,RT	NA|133aa|up_3|NZ_CP019487.1_991681_992080_+,NA|131aa|up_0|NZ_CP019487.1_994180_994573_+,NA|309aa|down_2|NZ_CP019487.1_1003658_1004585_+,NA|181aa|down_4|NZ_CP019487.1_1005459_1006002_+,NA|63aa|down_5|NZ_CP019487.1_1006274_1006463_+	NA|425aa|up_9|NZ_CP019487.1_980264_981539_+	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase	NA|486aa|up_8|NZ_CP019487.1_981535_982993_+	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|341aa|up_7|NZ_CP019487.1_983709_984732_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|388aa|up_6|NZ_CP019487.1_984821_985985_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|681aa|up_5|NZ_CP019487.1_985990_988033_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|1113aa|up_4|NZ_CP019487.1_988217_991556_+	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|133aa|up_3|NZ_CP019487.1_991681_992080_+	NA	NA|261aa|up_2|NZ_CP019487.1_992168_992951_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|384aa|up_1|NZ_CP019487.1_992938_994090_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|131aa|up_0|NZ_CP019487.1_994180_994573_+	NA	NA|306aa|down_0|NZ_CP019487.1_1001395_1002313_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|414aa|down_1|NZ_CP019487.1_1002392_1003634_+	pfam04143, Sulf_transp, Sulphur transport	NA|309aa|down_2|NZ_CP019487.1_1003658_1004585_+	NA	NA|168aa|down_3|NZ_CP019487.1_1004753_1005257_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|181aa|down_4|NZ_CP019487.1_1005459_1006002_+	NA	NA|63aa|down_5|NZ_CP019487.1_1006274_1006463_+	NA	NA|594aa|down_6|NZ_CP019487.1_1006438_1008220_+	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|208aa|down_7|NZ_CP019487.1_1011442_1012066_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|297aa|down_8|NZ_CP019487.1_1012265_1013156_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|417aa|down_9|NZ_CP019487.1_1013448_1014699_-	PRK10604, PRK10604, sensor protein RstB; Provisional
GCF_002302375.1_ASM230237v1	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	2	998689-998793	3	CRISPRCasFinder	no		RT,csa3	Orphan	TCGGCGGCGGCGGCGGTGCGGGCGGCA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA|133aa|up_3|NZ_CP019487.1_991681_992080_+,NA|131aa|up_0|NZ_CP019487.1_994180_994573_+,NA|309aa|down_2|NZ_CP019487.1_1003658_1004585_+,NA|181aa|down_4|NZ_CP019487.1_1005459_1006002_+,NA|63aa|down_5|NZ_CP019487.1_1006274_1006463_+	NA|425aa|up_9|NZ_CP019487.1_980264_981539_+	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase	NA|486aa|up_8|NZ_CP019487.1_981535_982993_+	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|341aa|up_7|NZ_CP019487.1_983709_984732_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|388aa|up_6|NZ_CP019487.1_984821_985985_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|681aa|up_5|NZ_CP019487.1_985990_988033_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|1113aa|up_4|NZ_CP019487.1_988217_991556_+	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|133aa|up_3|NZ_CP019487.1_991681_992080_+	NA	NA|261aa|up_2|NZ_CP019487.1_992168_992951_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|384aa|up_1|NZ_CP019487.1_992938_994090_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|131aa|up_0|NZ_CP019487.1_994180_994573_+	NA	NA|306aa|down_0|NZ_CP019487.1_1001395_1002313_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|414aa|down_1|NZ_CP019487.1_1002392_1003634_+	pfam04143, Sulf_transp, Sulphur transport	NA|309aa|down_2|NZ_CP019487.1_1003658_1004585_+	NA	NA|168aa|down_3|NZ_CP019487.1_1004753_1005257_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|181aa|down_4|NZ_CP019487.1_1005459_1006002_+	NA	NA|63aa|down_5|NZ_CP019487.1_1006274_1006463_+	NA	NA|594aa|down_6|NZ_CP019487.1_1006438_1008220_+	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|208aa|down_7|NZ_CP019487.1_1011442_1012066_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|297aa|down_8|NZ_CP019487.1_1012265_1013156_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|417aa|down_9|NZ_CP019487.1_1013448_1014699_-	PRK10604, PRK10604, sensor protein RstB; Provisional
GCF_002302375.1_ASM230237v1	NZ_CP019488	Sinorhizobium meliloti strain B399 chromosome, complete genome	1	173737-173883	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3	Orphan	TCTCCCCGCATGCGGGGAGAAGGG	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,cas3,csa3,RT	NA,NA	NA|243aa|up_9|NZ_CP019488.1_162773_163502_+	COG5461, COG5461, Type IV pili component [Cell motility and secretion]	NA|429aa|up_8|NZ_CP019488.1_163524_164811_+	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|467aa|up_7|NZ_CP019488.1_164941_166342_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|337aa|up_6|NZ_CP019488.1_166400_167411_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|328aa|up_5|NZ_CP019488.1_167418_168402_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|388aa|up_4|NZ_CP019488.1_168630_169794_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|270aa|up_3|NZ_CP019488.1_170050_170860_-	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	NA|464aa|up_2|NZ_CP019488.1_170990_172382_+	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]	NA|115aa|up_1|NZ_CP019488.1_172469_172814_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|285aa|up_0|NZ_CP019488.1_172822_173677_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|320aa|down_0|NZ_CP019488.1_173913_174873_-	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|543aa|down_1|NZ_CP019488.1_174883_176512_-	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|378aa|down_2|NZ_CP019488.1_176520_177654_-	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|361aa|down_3|NZ_CP019488.1_177653_178736_-	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|620aa|down_4|NZ_CP019488.1_178916_180776_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|356aa|down_5|NZ_CP019488.1_181067_182135_+	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane]	NA|127aa|down_6|NZ_CP019488.1_182255_182636_+	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism]	NA|340aa|down_7|NZ_CP019488.1_182697_183717_+	PRK00292, glk, glucokinase; Provisional	NA|602aa|down_8|NZ_CP019488.1_183825_185631_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|273aa|down_9|NZ_CP019488.1_185648_186467_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002302375.1_ASM230237v1	NZ_CP019488	Sinorhizobium meliloti strain B399 chromosome, complete genome	2	1129565-1129675	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3	Orphan	GGGCGAAGGGCCGGTCTATCCGAACATGTGAATGT	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA|52aa|up_3|NZ_CP019488.1_1124930_1125086_-,NA|59aa|up_2|NZ_CP019488.1_1125123_1125300_-,NA	NA|466aa|up_9|NZ_CP019488.1_1112264_1113662_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|987aa|up_8|NZ_CP019488.1_1113696_1116657_+	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA|773aa|up_7|NZ_CP019488.1_1116667_1118986_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|885aa|up_6|NZ_CP019488.1_1119348_1122003_-	PRK14015, pepN, aminopeptidase N; Provisional	NA|313aa|up_5|NZ_CP019488.1_1122428_1123367_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|430aa|up_4|NZ_CP019488.1_1123376_1124666_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|52aa|up_3|NZ_CP019488.1_1124930_1125086_-	NA	NA|59aa|up_2|NZ_CP019488.1_1125123_1125300_-	NA	NA|287aa|up_1|NZ_CP019488.1_1125438_1126299_-	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|430aa|up_0|NZ_CP019488.1_1126371_1127661_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|333aa|down_0|NZ_CP019488.1_1130083_1131082_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold	NA|296aa|down_1|NZ_CP019488.1_1131302_1132190_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP019488.1_1132279_1133293_-	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein	NA|134aa|down_3|NZ_CP019488.1_1133393_1133795_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|309aa|down_4|NZ_CP019488.1_1133933_1134860_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|496aa|down_5|NZ_CP019488.1_1134875_1136363_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|340aa|down_6|NZ_CP019488.1_1136355_1137375_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|319aa|down_7|NZ_CP019488.1_1137470_1138427_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|501aa|down_8|NZ_CP019488.1_1138455_1139958_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|107aa|down_9|NZ_CP019488.1_1140037_1140358_-	COG1742, COG1742, Uncharacterized conserved protein [Function unknown]
GCF_002302375.1_ASM230237v1	NZ_CP019488	Sinorhizobium meliloti strain B399 chromosome, complete genome	3	2288270-2288382	3	CRISPRCasFinder	no		DEDDh,WYL,cas3,csa3	Orphan	CCCTCATTCCTGTGCTTGTCACAGGAAT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA,NA|301aa|down_2|NZ_CP019488.1_2291069_2291972_+	NA|246aa|up_9|NZ_CP019488.1_2276088_2276826_+	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|215aa|up_8|NZ_CP019488.1_2276982_2277627_+	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|376aa|up_7|NZ_CP019488.1_2277794_2278922_+	pfam11064, DUF2865, Protein of unknown function (DUF2865)	NA|228aa|up_6|NZ_CP019488.1_2278945_2279629_-	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|274aa|up_5|NZ_CP019488.1_2279926_2280748_-	PRK06198, PRK06198, short chain dehydrogenase; Provisional	NA|398aa|up_4|NZ_CP019488.1_2281119_2282313_-	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|341aa|up_3|NZ_CP019488.1_2282410_2283433_+	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|276aa|up_2|NZ_CP019488.1_2283443_2284271_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|561aa|up_1|NZ_CP019488.1_2284273_2285956_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|640aa|up_0|NZ_CP019488.1_2286224_2288144_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|141aa|down_0|NZ_CP019488.1_2288770_2289193_+	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|578aa|down_1|NZ_CP019488.1_2289194_2290928_+	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|301aa|down_2|NZ_CP019488.1_2291069_2291972_+	NA	NA|132aa|down_3|NZ_CP019488.1_2291993_2292389_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|458aa|down_4|NZ_CP019488.1_2292524_2293898_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|464aa|down_5|NZ_CP019488.1_2294130_2295522_-	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant	NA|181aa|down_6|NZ_CP019488.1_2295726_2296269_-	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|232aa|down_7|NZ_CP019488.1_2296380_2297076_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|228aa|down_8|NZ_CP019488.1_2297295_2297979_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|632aa|down_9|NZ_CP019488.1_2298011_2299907_-	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002302375.1_ASM230237v1	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	1	295272-295381	1	CRISPRCasFinder	no			Orphan	TCATCCCGGCGGTCCCGCCGCGCGGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,csa3,RT	NA|129aa|up_8|NZ_CP019486.1_288236_288623_-,NA|108aa|up_6|NZ_CP019486.1_289985_290309_-,NA|86aa|up_5|NZ_CP019486.1_290815_291073_+,NA|103aa|up_3|NZ_CP019486.1_293525_293834_+,NA|116aa|up_0|NZ_CP019486.1_294541_294889_-,NA|160aa|down_0|NZ_CP019486.1_297545_298025_+,NA|90aa|down_2|NZ_CP019486.1_298832_299102_-,NA|163aa|down_5|NZ_CP019486.1_302683_303172_+,NA|115aa|down_9|NZ_CP019486.1_307163_307508_-	NA|524aa|up_9|NZ_CP019486.1_285973_287545_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|129aa|up_8|NZ_CP019486.1_288236_288623_-	NA	NA|224aa|up_7|NZ_CP019486.1_289320_289992_+	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	NA|108aa|up_6|NZ_CP019486.1_289985_290309_-	NA	NA|86aa|up_5|NZ_CP019486.1_290815_291073_+	NA	NA|135aa|up_4|NZ_CP019486.1_291475_291880_+	pfam07886, BA14K, BA14K-like protein	NA|103aa|up_3|NZ_CP019486.1_293525_293834_+	NA	NA|96aa|up_2|NZ_CP019486.1_293915_294203_+	pfam07756, DUF1612, Protein of unknown function (DUF1612)	NA|106aa|up_1|NZ_CP019486.1_294183_294501_+	pfam11972, HTH_13, HTH DNA binding domain	NA|116aa|up_0|NZ_CP019486.1_294541_294889_-	NA	NA|160aa|down_0|NZ_CP019486.1_297545_298025_+	NA	NA|212aa|down_1|NZ_CP019486.1_298082_298718_-	PRK09391, fixK, transcriptional regulator FixK; Provisional	NA|90aa|down_2|NZ_CP019486.1_298832_299102_-	NA	NA|586aa|down_3|NZ_CP019486.1_299242_301000_+	COG5616, COG5616, Predicted integral membrane protein [Function unknown]	NA|382aa|down_4|NZ_CP019486.1_301041_302187_-	PRK10983, PRK10983, AI-2E family transporter YdiK	NA|163aa|down_5|NZ_CP019486.1_302683_303172_+	NA	NA|410aa|down_6|NZ_CP019486.1_303175_304405_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|285aa|down_7|NZ_CP019486.1_304515_305370_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|401aa|down_8|NZ_CP019486.1_305968_307171_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|115aa|down_9|NZ_CP019486.1_307163_307508_-	NA
