assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002310475.1_ASM231047v1	NZ_CP023392	Lactococcus raffinolactis strain WiKim0068 chromosome, complete genome	1	641886-641995	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,WYL	Orphan	TTGTGAGCTGAAATCTAACGAAGTC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,WYL	NA|149aa|up_9|NZ_CP023392.1_632224_632671_-,NA|136aa|up_8|NZ_CP023392.1_632715_633123_-,NA	NA|149aa|up_9|NZ_CP023392.1_632224_632671_-	NA	NA|136aa|up_8|NZ_CP023392.1_632715_633123_-	NA	NA|56aa|up_7|NZ_CP023392.1_633759_633927_+	pfam11240, DUF3042, Protein of unknown function (DUF3042)	NA|198aa|up_6|NZ_CP023392.1_634045_634639_-	pfam12732, YtxH, YtxH-like protein	NA|133aa|up_5|NZ_CP023392.1_634723_635122_-	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|266aa|up_4|NZ_CP023392.1_635239_636037_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|308aa|up_3|NZ_CP023392.1_636038_636962_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|108aa|up_2|NZ_CP023392.1_637184_637508_-	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|411aa|up_1|NZ_CP023392.1_637500_638733_-	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|933aa|up_0|NZ_CP023392.1_638903_641702_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|238aa|down_0|NZ_CP023392.1_642217_642931_-	pfam05103, DivIVA, DivIVA protein	NA|266aa|down_1|NZ_CP023392.1_643035_643833_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|82aa|down_2|NZ_CP023392.1_643832_644078_-	pfam02325, YGGT, YGGT family	NA|183aa|down_3|NZ_CP023392.1_644077_644626_-	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|221aa|down_4|NZ_CP023392.1_644675_645338_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|422aa|down_5|NZ_CP023392.1_645341_646607_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|457aa|down_6|NZ_CP023392.1_646747_648118_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|290aa|down_7|NZ_CP023392.1_648280_649150_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|171aa|down_8|NZ_CP023392.1_649201_649714_-	pfam05991, NYN_YacP, YacP-like NYN domain	NA|257aa|down_9|NZ_CP023392.1_649730_650501_-	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3
GCF_002310475.1_ASM231047v1	NZ_CP023392	Lactococcus raffinolactis strain WiKim0068 chromosome, complete genome	2	1291566-1291714	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,WYL	Orphan	GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,WYL	NA|77aa|up_3|NZ_CP023392.1_1288346_1288577_+,NA|81aa|up_2|NZ_CP023392.1_1288580_1288823_+,NA	NA|133aa|up_9|NZ_CP023392.1_1281983_1282382_-	COG2501, COG2501, S4-like RNA binding protein [Replication, recombination, and repair]	NA|421aa|up_8|NZ_CP023392.1_1282620_1283883_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|428aa|up_7|NZ_CP023392.1_1283872_1285156_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|290aa|up_6|NZ_CP023392.1_1285229_1286099_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|186aa|up_5|NZ_CP023392.1_1286106_1286664_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|429aa|up_4|NZ_CP023392.1_1287063_1288350_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|77aa|up_3|NZ_CP023392.1_1288346_1288577_+	NA	NA|81aa|up_2|NZ_CP023392.1_1288580_1288823_+	NA	NA|581aa|up_1|NZ_CP023392.1_1288846_1290589_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|306aa|up_0|NZ_CP023392.1_1290555_1291473_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|289aa|down_0|NZ_CP023392.1_1291753_1292620_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|35aa|down_1|NZ_CP023392.1_1292765_1292870_-	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|330aa|down_2|NZ_CP023392.1_1293109_1294099_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|287aa|down_3|NZ_CP023392.1_1294100_1294961_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|147aa|down_4|NZ_CP023392.1_1295149_1295590_+	pfam08837, DUF1810, Protein of unknown function (DUF1810)	NA|478aa|down_5|NZ_CP023392.1_1296125_1297559_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|278aa|down_6|NZ_CP023392.1_1297659_1298493_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|391aa|down_7|NZ_CP023392.1_1298613_1299786_+	PRK09354, recA, recombinase A; Provisional	NA|133aa|down_8|NZ_CP023392.1_1299965_1300364_+	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|66aa|down_9|NZ_CP023392.1_1300864_1301062_-	pfam05532, CsbD, CsbD-like
GCF_002310475.1_ASM231047v1	NZ_CP023392	Lactococcus raffinolactis strain WiKim0068 chromosome, complete genome	3	1394621-1394754	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,WYL	Orphan	TTCGCGGGTTCCCCGCTCATCATTAAAGGAGTTGCCA	37	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,WYL	NA|109aa|up_4|NZ_CP023392.1_1391396_1391723_+,NA|77aa|up_3|NZ_CP023392.1_1391798_1392029_-,NA|121aa|down_8|NZ_CP023392.1_1407321_1407684_+	NA|288aa|up_9|NZ_CP023392.1_1387827_1388691_+	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	NA|174aa|up_8|NZ_CP023392.1_1388687_1389209_+	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|70aa|up_7|NZ_CP023392.1_1389205_1389415_+	PRK13672, PRK13672, hypothetical protein; Provisional	NA|142aa|up_6|NZ_CP023392.1_1389656_1390082_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|229aa|up_5|NZ_CP023392.1_1390254_1390941_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|109aa|up_4|NZ_CP023392.1_1391396_1391723_+	NA	NA|77aa|up_3|NZ_CP023392.1_1391798_1392029_-	NA	NA|134aa|up_2|NZ_CP023392.1_1392178_1392580_-	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|248aa|up_1|NZ_CP023392.1_1392659_1393403_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|342aa|up_0|NZ_CP023392.1_1393395_1394421_+	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]	NA|153aa|down_0|NZ_CP023392.1_1395430_1395889_+	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|211aa|down_1|NZ_CP023392.1_1395956_1396589_-	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|285aa|down_2|NZ_CP023392.1_1396770_1397625_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|243aa|down_3|NZ_CP023392.1_1397643_1398372_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|448aa|down_4|NZ_CP023392.1_1398381_1399725_+	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides	NA|323aa|down_5|NZ_CP023392.1_1399740_1400709_+	cd04513, Glycosylasparaginase, Glycosylasparaginase and similar proteins	NA|497aa|down_6|NZ_CP023392.1_1400790_1402281_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|1446aa|down_7|NZ_CP023392.1_1402818_1407156_+	pfam18202, TQ, T-Q ester bond containing domain	NA|121aa|down_8|NZ_CP023392.1_1407321_1407684_+	NA	NA|276aa|down_9|NZ_CP023392.1_1407667_1408495_+	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional
