assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002310615.1_ASM231061v1	NZ_CP023386	Escherichia coli strain 1190 chromosome, complete genome	1	1104214-1104486	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas14j,DEDDh,DinG,RT,c2c9_V-U4	Orphan	GAGTTCCCCGCGCGAGCGGGGATAAACCG,GAGTTCCCCGCGCGAGCGGGGATAAACCG,GAGTTCCCCGCGCGAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,4,4	4	Orphan	cas3,csa3,PD-DExK,cas14j,DEDDh,DinG,RT,c2c9_V-U4	NA,NA	NA|919aa|up_9|NZ_CP023386.1_1090806_1093563_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP023386.1_1093619_1094921_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP023386.1_1094968_1097203_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP023386.1_1097280_1097529_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP023386.1_1097528_1097864_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP023386.1_1097934_1098726_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP023386.1_1098953_1100591_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP023386.1_1100678_1101977_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP023386.1_1102036_1102909_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP023386.1_1103202_1103874_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP023386.1_1104531_1106010_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP023386.1_1106036_1107314_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP023386.1_1107632_1108418_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP023386.1_1108487_1109942_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP023386.1_1110034_1111372_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP023386.1_1111349_1112129_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP023386.1_1112125_1112986_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP023386.1_1113132_1113708_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP023386.1_1113724_1113985_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP023386.1_1113975_1115247_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002310615.1_ASM231061v1	NZ_CP023386	Escherichia coli strain 1190 chromosome, complete genome	2	2268956-2269079	2	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas14j,DEDDh,DinG,RT,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas14j,DEDDh,DinG,RT,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP023386.1_2277976_2278066_+	NA|471aa|up_9|NZ_CP023386.1_2258397_2259810_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP023386.1_2260366_2260576_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP023386.1_2261031_2261658_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP023386.1_2261678_2263781_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|220aa|up_5|NZ_CP023386.1_2263784_2264444_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP023386.1_2264507_2265176_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP023386.1_2265172_2265958_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP023386.1_2265961_2266774_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP023386.1_2266779_2268390_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP023386.1_2268515_2268821_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP023386.1_2269394_2270651_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP023386.1_2270691_2272065_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP023386.1_2272279_2272921_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP023386.1_2272960_2274109_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP023386.1_2274399_2275611_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP023386.1_2275723_2276656_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP023386.1_2276652_2277678_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP023386.1_2277976_2278066_+	NA	NA|390aa|down_8|NZ_CP023386.1_2278231_2279401_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP023386.1_2279546_2280128_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002310615.1_ASM231061v1	NZ_CP023386	Escherichia coli strain 1190 chromosome, complete genome	3	4102548-4102680	2	PILER-CR	no		cas3,csa3,PD-DExK,cas14j,DEDDh,DinG,RT,c2c9_V-U4	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas14j,DEDDh,DinG,RT,c2c9_V-U4	NA,NA	NA|84aa|up_9|NZ_CP023386.1_4093982_4094234_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP023386.1_4094236_4094470_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP023386.1_4094555_4095035_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP023386.1_4095226_4097089_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP023386.1_4097081_4097612_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP023386.1_4097719_4099051_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP023386.1_4099109_4099397_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP023386.1_4099393_4100680_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP023386.1_4100730_4101672_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP023386.1_4101686_4102457_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP023386.1_4102929_4104444_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP023386.1_4104474_4105617_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP023386.1_4105735_4106953_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP023386.1_4107026_4108580_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP023386.1_4108688_4109474_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP023386.1_4109479_4110070_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP023386.1_4110188_4110584_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP023386.1_4110844_4114063_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP023386.1_4114080_4115229_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP023386.1_4115684_4116506_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002310615.1_ASM231061v1	NZ_CP023386	Escherichia coli strain 1190 chromosome, complete genome	4	4333575-4333724	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas14j,DEDDh,DinG,RT,c2c9_V-U4	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas14j,DEDDh,DinG,RT,c2c9_V-U4	NA,NA|532aa|down_6|NZ_CP023386.1_4340821_4342417_-	NA|340aa|up_9|NZ_CP023386.1_4321767_4322787_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP023386.1_4322790_4323354_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP023386.1_4323570_4324602_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP023386.1_4324625_4325390_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP023386.1_4325452_4326772_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP023386.1_4326838_4327837_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP023386.1_4327914_4329417_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP023386.1_4329577_4330660_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP023386.1_4330659_4331760_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP023386.1_4332026_4333538_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP023386.1_4333891_4334335_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP023386.1_4334334_4337190_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP023386.1_4337245_4338442_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP023386.1_4338634_4339138_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP023386.1_4339183_4339600_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP023386.1_4339761_4340766_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|532aa|down_6|NZ_CP023386.1_4340821_4342417_-	NA	NA|151aa|down_7|NZ_CP023386.1_4342539_4342992_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP023386.1_4343136_4343730_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP023386.1_4343800_4344514_+	PRK12742, PRK12742, SDR family oxidoreductase
