The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	551742	616690	4716432	tRNA,integrase,transposase,protease	Vibrio_phage(17.65%)	57	582146:582161	586640:586655
WP_001162171.1|551742_553095_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_001232255.1|553277_553664_+	cytochrome b562	NA	NA	NA	NA	NA
WP_001106226.1|553708_554173_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	H6WXC9	Vibrio_phage	59.7	2.5e-52
WP_000187791.1|554330_556469_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.6	9.1e-267
WP_001301172.1|556862_558518_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_001299664.1|558567_559989_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_001181312.1|560107_561055_-	HTH-type transcriptional regulator TreR	NA	C6ZCU4	Enterobacteria_phage	21.8	7.9e-13
WP_001387276.1|561239_561293_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA	NA
WP_000471885.1|561433_564130_+	magnesium-translocating P-type ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	27.6	8.2e-47
WP_000047539.1|564335_564722_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_000148581.1|564794_565256_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_000013046.1|565268_566204_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	40.2	2.9e-52
WP_001296693.1|566207_566342_-	pyr operon leader peptide	NA	NA	NA	NA	NA
WP_000230281.1|566622_567018_-	RidA family protein	NA	NA	NA	NA	NA
WP_000500689.1|567148_567862_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000256681.1|567932_568526_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001326836.1|568670_569123_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_000036448.1|569245_570841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000012907.1|570896_571901_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000002953.1|572062_572479_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_001059412.1|572524_573028_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000079655.1|573212_574409_+	DUF898 domain-containing protein	NA	NA	NA	NA	NA
WP_000416382.1|574464_577320_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.3e-140
WP_000786399.1|577319_577763_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_000397144.1|578116_579628_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
WP_000584107.1|579894_580995_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_001545798.1|580994_582077_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
582146:582161	attL	CTGAAAAATAATTAAA	NA	NA	NA	NA
WP_001352285.1|583869_584889_-	NADPH-dependent aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	4.9e-45
WP_000772679.1|585332_586598_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	40.5	4.8e-74
WP_001446910.1|586640_587015_-	hypothetical protein	NA	NA	NA	NA	NA
586640:586655	attR	TTTAATTATTTTTCAG	NA	NA	NA	NA
WP_001352286.1|587017_589198_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_001352287.1|589315_590218_-	DUF1837 domain-containing protein	NA	NA	NA	NA	NA
WP_001254928.1|590810_591962_+|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.3	2.2e-41
WP_000349548.1|592910_593114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001300609.1|593152_593935_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	100.0	2.0e-139
WP_000255944.1|593931_594954_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	100.0	1.9e-201
WP_049254365.1|595201_595555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001352291.1|595764_596091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001375333.1|596999_597434_+	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
WP_073978005.1|597451_598060_+	maturase	NA	NA	NA	NA	NA
WP_000416153.1|598784_599816_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.0	8.0e-19
WP_000916805.1|600086_600530_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000705931.1|600545_600833_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000345346.1|600845_602102_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_001446914.1|602312_602552_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	66.0	1.5e-13
WP_089516276.1|602937_604211_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	98.7	2.6e-176
WP_000107480.1|604355_605369_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_000998347.1|605380_606697_-	L-fucose:H+ symporter permease	NA	NA	NA	NA	NA
WP_000350265.1|606724_607645_-	ribokinase	NA	NA	NA	NA	NA
WP_001295538.1|607950_608733_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001387298.1|608734_608833_-	acetolactate synthase	NA	NA	NA	NA	NA
WP_001296706.1|609931_610060_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_001390362.1|610078_610183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000145475.1|610240_610897_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001375347.1|611144_612422_-	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
WP_032215506.1|612484_614482_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	5.7e-21
WP_001254928.1|615538_616690_-|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.3	2.2e-41
>prophage 2
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	1584615	1639869	4716432	terminase,tail,portal,integrase	Salmonella_phage(48.39%)	62	1603517:1603536	1645084:1645103
WP_000290938.1|1584615_1585647_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	56.1	1.9e-105
WP_072005502.1|1585833_1586025_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	70.5	2.4e-09
WP_016237786.1|1586040_1586610_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	42.3	9.4e-38
WP_001247707.1|1586735_1586957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460883.1|1586989_1587499_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.2	1.3e-86
WP_000956182.1|1587506_1587707_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
WP_000963475.1|1587670_1588012_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	98.2	1.7e-55
WP_001244223.1|1588079_1588313_+	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	97.4	3.2e-32
WP_032258242.1|1588312_1588540_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	3.9e-35
WP_032258243.1|1588536_1589394_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	94.7	1.5e-156
WP_032258244.1|1589390_1591805_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	97.3	0.0e+00
WP_001154434.1|1591958_1592147_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
WP_001217575.1|1592157_1592391_+	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
WP_000497736.1|1592700_1593852_+	TIGR02391 family protein	NA	NA	NA	NA	NA
WP_032258245.1|1593903_1594938_-|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	89.0	2.4e-172
WP_001098431.1|1594937_1596704_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.7	0.0e+00
WP_107328620.1|1596873_1597632_+|tail	phage tail protein	tail	E5G6Q1	Salmonella_phage	75.0	2.9e-90
WP_032258246.1|1597628_1598114_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.0	1.8e-66
WP_032258247.1|1598110_1599211_+	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	85.8	3.4e-177
WP_000972391.1|1599301_1599520_+	transcriptional activator Ogr/delta	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_001024876.1|1599755_1601441_-	aspartate:alanine antiporter	NA	NA	NA	NA	NA
WP_000681108.1|1601710_1602088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001195240.1|1602117_1602375_-	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	61.9	8.6e-23
WP_001201560.1|1602534_1602822_+	DUF1418 family protein	NA	NA	NA	NA	NA
WP_000189159.1|1602805_1603528_+	nitroreductase NfsA	NA	NA	NA	NA	NA
1603517:1603536	attL	GCGACGCGCTAAAACCGCCA	NA	NA	NA	NA
WP_000684321.1|1603588_1604491_+	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	34.4	2.6e-37
WP_000203025.1|1604578_1605055_+	YbjN domain-containing protein	NA	NA	NA	NA	NA
WP_000126072.1|1605405_1606518_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
WP_000996005.1|1606612_1607746_+	putrescine ABC transporter ATP-binding subunit PotG	NA	G3M9Y6	Bacillus_virus	34.0	1.4e-29
WP_000105430.1|1607755_1608709_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
WP_001061658.1|1608705_1609551_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
WP_000389260.1|1609610_1610099_+	YbjO family protein	NA	NA	NA	NA	NA
WP_001149682.1|1610139_1611267_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	27.3	1.0e-27
WP_001352074.1|1611465_1612197_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000464491.1|1612487_1613156_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
WP_001001691.1|1613155_1613872_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
WP_000756569.1|1613878_1614610_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000027205.1|1614627_1615356_-	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	36.7	6.0e-29
WP_001270734.1|1615573_1616089_-	lipoprotein	NA	NA	NA	NA	NA
WP_001160739.1|1616214_1616538_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001252135.1|1616534_1617365_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.0	5.7e-07
WP_001338420.1|1617361_1618375_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001136554.1|1618473_1619904_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000566376.1|1619914_1620916_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_000815337.1|1620952_1622671_-	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.0	2.3e-31
WP_000178676.1|1622803_1623772_-	NADH oxidoreductase	NA	NA	NA	NA	NA
WP_000458809.1|1623783_1625436_-	hydroxylamine reductase	NA	NA	NA	NA	NA
WP_000491142.1|1625579_1626479_-	L-lysine exporter LysO	NA	NA	NA	NA	NA
WP_001298299.1|1626973_1627669_-	aquaporin Z	NA	NA	NA	NA	NA
WP_000599825.1|1628094_1629753_+	ATP-dependent endonuclease	NA	NA	NA	NA	NA
WP_001380339.1|1629749_1630706_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
WP_000746443.1|1630856_1631972_+	macrolide transporter subunit MacA	NA	NA	NA	NA	NA
WP_000188144.1|1631968_1633915_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.1	1.1e-37
WP_000410785.1|1633987_1634212_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
WP_000092883.1|1634616_1635855_+|integrase	site-specific integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	52.5	4.0e-126
WP_001206975.1|1636274_1636484_+	AlpA family phage regulatory protein	NA	A0A2H4JB58	uncultured_Caudovirales_phage	71.4	1.5e-17
WP_157732779.1|1636598_1636772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000094457.1|1636829_1637027_-	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	43.1	9.5e-06
WP_157732780.1|1637232_1637436_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
WP_001113144.1|1637428_1637749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001710148.1|1637755_1638055_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_048230479.1|1638051_1639869_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	48.1	1.7e-128
1645084:1645103	attR	GCGACGCGCTAAAACCGCCA	NA	NA	NA	NA
>prophage 3
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	1914602	1954475	4716432	tRNA,transposase,integrase	Escherichia_phage(30.77%)	42	1933771:1933830	1959272:1960039
WP_001297484.1|1914602_1915709_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000476093.1|1915762_1916224_-	phosphatase NudJ	NA	NA	NA	NA	NA
WP_032258358.1|1916233_1916887_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000444488.1|1917058_1918309_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	96.3	3.2e-22
WP_001295666.1|1918411_1918735_-	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	65.4	3.0e-41
WP_032082692.1|1919272_1919383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000373101.1|1919435_1919840_-	DUF1398 domain-containing protein	NA	NA	NA	NA	NA
WP_000332303.1|1920060_1920792_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	50.5	2.7e-53
WP_001299269.1|1920996_1922208_-	blue light-responsive regulator BluF	NA	NA	NA	NA	NA
WP_000554140.1|1922521_1922758_+	two-component-system connector protein YcgZ	NA	NA	NA	NA	NA
WP_000858002.1|1922800_1923073_+	two-component-system connector protein YmgA	NA	NA	NA	NA	NA
WP_000888772.1|1923101_1923368_+	biofilm/acid-resistance regulator AriR	NA	NA	NA	NA	NA
WP_001065752.1|1923480_1923729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001246498.1|1924060_1925584_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
WP_001065861.1|1925715_1925934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032258357.1|1926333_1927419_+	porin	NA	NA	NA	NA	NA
WP_000428546.1|1929858_1930452_+	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA	NA
WP_001089068.1|1930564_1931770_-	tetracycline efflux MFS transporter Tet(B)	NA	A0A2H4UVM2	Bodo_saltans_virus	24.4	3.0e-09
WP_001322387.1|1931848_1932475_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA	NA
WP_001284954.1|1932452_1933139_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000460651.1|1933146_1933533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049802299.1|1933525_1933789_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
1933771:1933830	attL	GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC	NA	NA	NA	NA
WP_000412211.1|1934761_1935421_+	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	100.0	8.4e-131
WP_000656305.1|1935621_1935999_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001138064.1|1936065_1939032_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.6	0.0e+00
WP_000147567.1|1939034_1939595_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
WP_000454193.1|1939720_1940071_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_000845048.1|1940273_1941287_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_001389366.1|1941444_1941918_+	trimethoprim-resistant dihydrofolate reductase DfrA17	NA	A0A1B2IBQ4	Erwinia_phage	33.1	7.6e-17
WP_000503573.1|1942048_1942837_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA	NA
WP_000679427.1|1943042_1943390_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_000259031.1|1943383_1944223_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA	NA
WP_000376616.1|1944350_1944554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000184001.1|1944709_1945915_+	chromate efflux transporter	NA	NA	NA	NA	NA
WP_000130000.1|1945925_1946231_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001389365.1|1946457_1947222_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_001137892.1|1947714_1948299_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000219391.1|1949532_1950438_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_001067855.1|1950559_1951264_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000018329.1|1951414_1952230_+	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
WP_001067855.1|1952419_1953124_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000935452.1|1953170_1954475_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
1959272:1960039	attR	GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC	NA	NA	NA	NA
>prophage 4
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	2343632	2391754	4716432	protease,transposase,integrase,lysis,tail	Enterobacteria_phage(26.47%)	60	2354067:2354082	2384164:2384179
WP_000527809.1|2343632_2345093_-	mannitol dehydrogenase family protein	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	1.5e-42
WP_000347482.1|2345181_2346465_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_120795384.1|2347069_2347183_+	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000836768.1|2347251_2347485_+	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_000078177.1|2347801_2348392_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000885611.1|2348489_2349065_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.3	6.5e-103
WP_049254577.1|2349064_2350870_-	hypothetical protein	NA	A0A0K2FJ14	Enterobacteria_phage	99.1	1.3e-213
WP_000453611.1|2350844_2351390_-	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	2.3e-94
WP_001368374.1|2351778_2352012_+	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	84.1	2.5e-21
WP_000373090.1|2352069_2352480_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
WP_001019606.1|2352631_2352805_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_001309517.1|2352976_2353132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_120795388.1|2353211_2353277_-	Qin prophage; protein YnfR	NA	NA	NA	NA	NA
WP_071524604.1|2353279_2353468_-	cold-shock protein	NA	NA	NA	NA	NA
WP_000066495.1|2353478_2353691_-	cold shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
WP_001071769.1|2354053_2354551_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
2354067:2354082	attL	TTTTTATCTCTTAAAG	NA	NA	NA	NA
WP_001092971.1|2354547_2355081_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
WP_000189916.1|2355077_2355389_-	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
WP_000839590.1|2355393_2355609_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
WP_000066484.1|2356362_2356578_-	cold shock-like protein CspB	NA	A0A1W6JNX5	Morganella_phage	76.5	3.4e-25
WP_000087756.1|2356878_2357091_+	cold shock-like protein CspF	NA	NA	NA	NA	NA
WP_120795389.1|2357145_2357235_+	Qin prophage; protein YnfS	NA	NA	NA	NA	NA
WP_001047135.1|2357512_2358265_-	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
WP_001265199.1|2358278_2359328_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.0	2.8e-112
WP_012304870.1|2359329_2359608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000980994.1|2359674_2359926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813254.1|2360142_2360298_-	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_000323025.1|2360369_2360657_-	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
WP_000534858.1|2360656_2360896_-	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
WP_001326990.1|2360920_2361226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001301033.1|2361428_2361761_+	protein FlxA	NA	NA	NA	NA	NA
WP_000589005.1|2362197_2363511_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_000955178.1|2363688_2363871_+	hypothetical protein	NA	Q7Y2Q9	Escherichia_phage	74.5	6.3e-12
WP_001341330.1|2364934_2365168_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	100.0	7.8e-39
WP_001333339.1|2365216_2366752_+|transposase	IS66-like element ISEc22 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	99.4	3.5e-289
WP_001310834.1|2367271_2367628_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
WP_001151262.1|2367624_2368047_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	92.0	4.4e-64
WP_001296941.1|2370129_2370366_+	excisionase family protein	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
WP_000876958.1|2370400_2371681_+|integrase	site-specific integrase	integrase	B6DZ48	Enterobacteria_phage	62.1	3.3e-155
WP_001360138.1|2371700_2371811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000836066.1|2371868_2372888_-	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
WP_001295394.1|2372899_2374114_-	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
WP_000598292.1|2374319_2374646_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
WP_000705211.1|2374780_2375122_+	DUF1283 family protein	NA	NA	NA	NA	NA
WP_001138581.1|2375156_2375717_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
WP_001321287.1|2375719_2376430_-	YnfC family lipoprotein	NA	NA	NA	NA	NA
WP_001300836.1|2376537_2376843_+	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
WP_000041675.1|2377041_2379468_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.2	7.7e-214
WP_001340362.1|2379528_2381952_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	48.6	1.7e-208
WP_000213028.1|2381962_2382580_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
WP_049254808.1|2382581_2383436_+	dimethyl sulfoxide reductase	NA	NA	NA	NA	NA
WP_000148710.1|2383478_2384093_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
WP_001315626.1|2384251_2385544_+	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA	NA
2384164:2384179	attR	TTTTTATCTCTTAAAG	NA	NA	NA	NA
WP_000919231.1|2385496_2386192_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_000225262.1|2386316_2387537_-	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA	NA
WP_001019525.1|2387671_2388565_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000091840.1|2388671_2389925_+	MFS transporter	NA	NA	NA	NA	NA
WP_000743957.1|2390321_2390657_+	acid shock protein	NA	NA	NA	NA	NA
WP_000233090.1|2390749_2390833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001260865.1|2390932_2391754_+|protease	serine protease	protease	NA	NA	NA	NA
>prophage 5
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	2821346	2827775	4716432		Escherichia_phage(33.33%)	6	NA	NA
WP_000704908.1|2821346_2822513_-	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	55.0	1.4e-112
WP_001021402.1|2822693_2823248_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.6	1.5e-51
WP_000698224.1|2823262_2824153_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	33.6	2.1e-28
WP_000676429.1|2824184_2825054_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	66.7	9.8e-111
WP_000699389.1|2825080_2826145_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	55.0	5.8e-105
WP_000043540.1|2826368_2827775_-	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.9	1.6e-38
>prophage 6
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	2919951	2928259	4716432		Enterobacteria_phage(83.33%)	9	NA	NA
WP_001375261.1|2919951_2921952_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
WP_001295429.1|2922076_2922538_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
WP_000950409.1|2922577_2923048_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	5.2e-82
WP_000598641.1|2923094_2923814_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295431.1|2923810_2925496_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_001240401.1|2925717_2926449_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001216963.1|2926508_2926616_+	protein YohO	NA	NA	NA	NA	NA
WP_000783120.1|2926596_2927328_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_000569315.1|2927332_2928259_-	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
>prophage 7
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	3147902	3215974	4716432	integrase,holin,terminase,lysis,tRNA,tail,head	Enterobacteria_phage(38.71%)	87	3170191:3170207	3219649:3219665
WP_023281383.1|3147902_3149909_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
WP_000559764.1|3150029_3150308_-	YfcL family protein	NA	NA	NA	NA	NA
WP_024238824.1|3150341_3150890_-	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_000447361.1|3150889_3151699_-	TSUP family transporter	NA	NA	NA	NA	NA
WP_001043825.1|3151698_3152523_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
WP_032161700.1|3152526_3153612_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.5	2.7e-89
WP_001300582.1|3153646_3154579_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000730806.1|3154744_3155296_+	endonuclease SmrB	NA	NA	NA	NA	NA
WP_000698745.1|3155366_3156188_-	YfcO family protein	NA	NA	NA	NA	NA
WP_001043398.1|3156189_3156729_-	fimbrial protein	NA	NA	NA	NA	NA
WP_001232541.1|3156725_3157214_-	fimbrial protein	NA	NA	NA	NA	NA
WP_072132949.1|3157210_3157723_-	fimbrial protein	NA	NA	NA	NA	NA
WP_001281606.1|3157722_3158475_-	fimbrial chaperone	NA	NA	NA	NA	NA
WP_063097536.1|3161707_3161917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000033316.1|3161998_3162562_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_001195819.1|3163242_3163728_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
WP_001618735.1|3163930_3166075_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
WP_001530662.1|3166074_3167385_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
WP_001296261.1|3167565_3167850_-	YfcZ/YiiS family protein	NA	NA	NA	NA	NA
WP_001400735.1|3168221_3169562_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA	NA
3170191:3170207	attL	TATTGGTATCGACAACC	NA	NA	NA	NA
WP_096040807.1|3171451_3171763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000776768.1|3171944_3172700_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
WP_024238820.1|3172993_3173926_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	98.7	5.7e-165
WP_000958671.1|3174237_3175395_+|integrase	prophage integrase IntS	integrase	A5VW56	Enterobacteria_phage	100.0	5.7e-223
WP_062810236.1|3175482_3175899_-|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	47.6	4.1e-22
WP_073978006.1|3175901_3176801_-	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	73.7	6.7e-62
WP_052905984.1|3176800_3177481_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	78.3	5.9e-103
WP_062810237.1|3177477_3178677_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	83.1	4.1e-184
WP_001270634.1|3178676_3179030_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	90.6	3.1e-55
WP_062810238.1|3179029_3179785_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	84.9	3.2e-110
WP_062810239.1|3179827_3180244_-	toxin YafO, type II toxin-antitoxin system family protein	NA	NA	NA	NA	NA
WP_001766747.1|3180245_3180818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062810240.1|3180986_3181328_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	86.7	5.5e-33
WP_025404368.1|3181331_3182393_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	80.3	2.0e-158
WP_016233440.1|3182395_3182698_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	90.0	2.4e-48
WP_001420197.1|3182697_3183285_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	88.5	6.9e-84
WP_062810241.1|3183284_3185273_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	74.4	1.8e-269
WP_023565715.1|3185450_3185903_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	72.7	4.7e-56
WP_000109249.1|3185906_3186347_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	75.3	7.0e-57
WP_062810242.1|3186357_3187503_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	73.5	1.0e-160
WP_001349562.1|3187506_3188070_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	76.3	3.4e-80
WP_062810243.1|3188044_3188434_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	95.3	3.3e-66
WP_062810244.1|3188420_3188975_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	83.2	7.4e-80
WP_062810245.1|3188971_3189379_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	94.8	5.7e-69
WP_001107515.1|3189344_3189566_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	68.6	7.7e-12
WP_062810246.1|3189607_3190549_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	87.2	8.3e-156
WP_062810247.1|3190560_3191064_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	82.6	2.7e-73
WP_062810248.1|3191068_3192289_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	89.3	2.4e-203
WP_096040808.1|3192303_3193041_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	95.0	5.0e-108
WP_062810250.1|3192928_3194395_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	93.4	1.1e-266
WP_062810251.1|3194394_3196017_-	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	96.1	0.0e+00
WP_050194107.1|3196019_3196571_-|terminase	terminase small subunit	terminase	G0ZND3	Cronobacter_phage	69.2	1.6e-66
WP_053903632.1|3196593_3196812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021528610.1|3197303_3197909_-	hypothetical protein	NA	A0A1R3Y613	Salmonella_virus	96.5	2.7e-107
WP_062810252.1|3198058_3198496_-|lysis	lysis protein	lysis	Q9MCN3	Enterobacteria_phage	97.2	5.5e-70
WP_000229392.1|3198492_3198969_-	glycoside hydrolase family protein	NA	K7PKV2	Enterobacteria_phage	100.0	1.7e-88
WP_000783734.1|3198952_3199276_-|holin	phage holin, lambda family	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
WP_001235459.1|3199952_3200576_-	antitermination protein	NA	K7P6X1	Enterobacteria_phage	100.0	3.0e-114
WP_062810253.1|3200572_3201238_-	serine/threonine protein phosphatase	NA	K7P721	Enterobacteria_phage	97.7	3.6e-129
WP_062810254.1|3201234_3201840_-	recombination protein NinG	NA	A0A1I9LJQ2	Stx_converting_phage	98.5	1.6e-96
WP_000950963.1|3201832_3202009_-	protein ninF	NA	Q76H71	Enterobacteria_phage	100.0	6.7e-27
WP_062810255.1|3202001_3202364_-	DUF2591 domain-containing protein	NA	K7PH48	Enterobacterial_phage	97.5	5.8e-65
WP_001254255.1|3202366_3202543_-	NinE family protein	NA	A5VW90	Enterobacteria_phage	100.0	4.6e-28
WP_000153259.1|3202539_3203067_-	phage N-6-adenine-methyltransferase	NA	K7PMG2	Enterobacteria_phage	100.0	9.5e-101
WP_000736913.1|3203063_3203504_-	recombination protein NinB	NA	M1FPM8	Enterobacteria_phage	100.0	1.2e-80
WP_062810256.1|3203578_3204955_-	AAA family ATPase	NA	A0A0P0ZC27	Stx2-converting_phage	99.8	1.3e-253
WP_001608293.1|3204951_3205773_-	replication protein	NA	K7PJZ3	Enterobacterial_phage	99.6	2.0e-153
WP_001177649.1|3205955_3206234_-	transcriptional regulator	NA	K7P7A2	Enterobacteria_phage	98.9	4.7e-43
WP_000437875.1|3206352_3206553_-	hypothetical protein	NA	A4KWT7	Enterobacteria_phage	100.0	4.3e-30
WP_000104863.1|3206653_3207367_+	LexA family transcriptional regulator	NA	M1FN96	Enterobacteria_phage	100.0	1.6e-127
WP_000788349.1|3207479_3208319_+	protein rexA	NA	M1FPD4	Enterobacteria_phage	100.0	3.7e-155
WP_001245922.1|3208334_3208769_+	protein rexB	NA	M1FPN8	Enterobacteria_phage	100.0	1.9e-70
WP_023146901.1|3209233_3209566_+	antitermination protein	NA	Q716D8	Shigella_phage	99.1	1.4e-54
WP_062810257.1|3209766_3210237_+	hypothetical protein	NA	A0A1I9LJN4	Stx_converting_phage	98.1	4.1e-87
WP_000065355.1|3210387_3210756_+	DUF2528 family protein	NA	K7PGR6	Enterobacteria_phage	100.0	1.2e-65
WP_000972063.1|3210831_3210966_+	hypothetical protein	NA	K7PHK2	Enterobacteria_phage	100.0	3.1e-16
WP_001243355.1|3210950_3211103_+	host cell division inhibitory peptide Kil	NA	A5VWA5	Enterobacteria_phage	100.0	4.7e-21
WP_000365280.1|3211357_3212065_+	recombinase	NA	K7PKU3	Enterobacteria_phage	100.0	7.6e-138
WP_062810259.1|3212065_3212539_+	single-stranded DNA-binding protein	NA	G8EYH4	Enterobacteria_phage	96.2	2.1e-59
WP_001111298.1|3213041_3213335_+	DUF2856 family protein	NA	K7P7E6	Enterobacteria_phage	99.0	1.9e-50
WP_062810260.1|3213345_3213513_+	DUF2737 family protein	NA	G9L664	Escherichia_phage	98.2	5.6e-23
WP_000109679.1|3213509_3213809_+	hypothetical protein	NA	Q716F3	Shigella_phage	97.0	4.0e-56
WP_077861896.1|3213810_3214587_+	ead/Ea22-like family protein	NA	Q76H45	Enterobacteria_phage	71.1	1.2e-67
WP_001336414.1|3214671_3214956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001336413.1|3214933_3215086_+	hypothetical protein	NA	Q71T70	Escherichia_phage	73.7	5.1e-07
WP_001281192.1|3215304_3215649_+	hypothetical protein	NA	K7PJY7	Enterobacterial_phage	100.0	5.3e-60
WP_001163428.1|3215773_3215974_+	response regulator inhibitor TorI	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
3219649:3219665	attR	TATTGGTATCGACAACC	NA	NA	NA	NA
>prophage 8
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	3583650	3596833	4716432		Escherichia_phage(40.0%)	12	NA	NA
WP_001272928.1|3583650_3586212_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
WP_001141323.1|3586317_3586974_+	protein-serine/threonine phosphatase	NA	K7P7V3	Enterobacteria_phage	45.8	3.3e-50
WP_001295181.1|3587024_3587792_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
WP_000847985.1|3587987_3588896_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
WP_000590405.1|3588892_3590155_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.0	8.3e-135
WP_001278994.1|3590151_3590790_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
WP_001136918.1|3590794_3591571_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_049254918.1|3591659_3593024_+	GntP family transporter	NA	NA	NA	NA	NA
WP_000081550.1|3593117_3594110_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
WP_001272590.1|3594172_3595312_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
WP_000254708.1|3595451_3596078_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
WP_001295182.1|3596071_3596833_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
>prophage 9
NZ_CP023383	Escherichia coli strain 1223 chromosome, complete genome	4716432	3826786	3888175	4716432	tRNA,integrase,transposase,protease	Enterobacteria_phage(22.22%)	57	3815053:3815071	3863333:3863351
3815053:3815071	attL	ACATACCGCCCGCAATCAT	NA	NA	NA	NA
WP_001300769.1|3826786_3827284_+|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_000286500.1|3827378_3828086_+	deoxyribonuclease I	NA	NA	NA	NA	NA
WP_001300912.1|3828165_3828897_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_000593273.1|3828909_3829860_+	glutathione synthase	NA	NA	NA	NA	NA
WP_001053178.1|3829968_3830532_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_000017106.1|3830531_3830948_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_001618842.1|3831131_3832112_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_000997795.1|3832129_3832834_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA	NA
WP_001094831.1|3832851_3833418_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA	NA
WP_000994920.1|3833414_3833705_+	YggU family protein	NA	NA	NA	NA	NA
WP_001174735.1|3833712_3834306_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_049290749.1|3834298_3835435_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_001460056.1|3835498_3836506_-	DUF1202 family protein	NA	NA	NA	NA	NA
WP_000394131.1|3836622_3837669_-	L-asparaginase 2	NA	NA	NA	NA	NA
WP_024238452.1|3837844_3838564_-	DUF2884 domain-containing protein	NA	NA	NA	NA	NA
WP_001107564.1|3838747_3839074_-	YggL family protein	NA	NA	NA	NA	NA
WP_000786911.1|3839073_3839793_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001321419.1|3839953_3841006_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000091700.1|3841033_3841309_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_023281469.1|3841373_3842453_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA	NA
WP_001360964.1|3842654_3843911_+	nucleoside permease	NA	NA	NA	NA	NA
WP_024238454.1|3843960_3846096_-	ornithine decarboxylase	NA	NA	NA	NA	NA
WP_000234514.1|3846493_3847201_+	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_001218742.1|3847558_3848743_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	53.1	1.7e-121
WP_000053331.1|3848892_3849903_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000253907.1|3849998_3852125_+	alpha-galactosidase	NA	NA	NA	NA	NA
WP_001083368.1|3852187_3853465_+	MFS transporter	NA	NA	NA	NA	NA
WP_000813678.1|3853464_3854895_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_001037798.1|3855089_3856484_+	glycoporin	NA	NA	NA	NA	NA
WP_100620379.1|3857748_3858558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001282653.1|3858554_3859310_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	43.8	6.2e-45
WP_023181050.1|3859326_3860862_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	40.7	6.6e-102
WP_023181051.1|3861035_3861428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024179174.1|3861571_3863245_-	phosphoethanolamine transferase	NA	NA	NA	NA	NA
WP_001238009.1|3863297_3863495_-	hypothetical protein	NA	NA	NA	NA	NA
3863333:3863351	attR	ACATACCGCCCGCAATCAT	NA	NA	NA	NA
WP_000766273.1|3863634_3863901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096040809.1|3863897_3865469_-	cobalamin adenosyltransferase	NA	NA	NA	NA	NA
WP_001207400.1|3865515_3866595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000785681.1|3866643_3867540_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_001389182.1|3867959_3868697_-	porin family protein	NA	NA	NA	NA	NA
WP_000335224.1|3869015_3869489_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_001232703.1|3870040_3871048_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023181052.1|3871073_3872483_-	sucrose-6-phosphate hydrolase	NA	F8WPR5	Bacillus_phage	22.9	1.1e-15
WP_000344909.1|3872482_3873853_-	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000277208.1|3873913_3875431_-	carbohydrate porin	NA	NA	NA	NA	NA
WP_000107666.1|3875598_3876519_-	aminoimidazole riboside kinase	NA	NA	NA	NA	NA
WP_085948316.1|3877227_3878500_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.7	2.8e-170
WP_000836532.1|3878786_3879449_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_000765976.1|3879634_3880594_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_001389183.1|3880615_3880993_+	RidA family protein	NA	NA	NA	NA	NA
WP_001389184.1|3881007_3882240_+	MFS transporter	NA	NA	NA	NA	NA
WP_000624710.1|3883260_3883611_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	64.7	3.6e-40
WP_000422706.1|3883607_3884027_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	90.7	1.3e-44
WP_094338647.1|3884283_3885557_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.0	6.1e-170
WP_000301136.1|3885770_3886727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001328257.1|3886707_3887637_-	DNA (cytosine-5-)-methyltransferase	NA	A0A1P8DJM9	Virus_Rctr41k	38.1	1.4e-51
WP_000745631.1|3888076_3888175_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_CP023384	Escherichia coli strain 1223 plasmid p147, complete sequence	147369	5199	27860	147369	transposase,protease	Dickeya_phage(33.33%)	15	NA	NA
WP_021535332.1|5199_6147_-|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_001332050.1|6250_6640_+|protease	outer membrane protease	protease	NA	NA	NA	NA
WP_001312823.1|7419_7578_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_032148326.1|9245_10433_+	efflux RND transporter periplasmic adaptor subunit	NA	A0A140XAI1	Dickeya_phage	55.7	1.0e-09
WP_001610972.1|10429_12370_+	MacB family efflux pump subunit	NA	G9BWD6	Planktothrix_phage	39.0	1.8e-35
WP_032148327.1|12373_13744_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_001610978.1|16140_16917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001610979.1|16918_19183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071595360.1|19418_19550_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001610984.1|21523_21895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001610303.1|21937_22405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001610985.1|22404_22674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001610305.1|22905_24303_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_000450494.1|24938_26132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096040815.1|26586_27860_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	96.7	1.7e-172
