assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002310895.1_ASM231089v1	NZ_CP017085	Proteus mirabilis strain T18 chromosome, complete genome	1	319022-319161	1	PILER-CR	no	TnsE_C	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA|126aa|up_7|NZ_CP017085.1_313193_313571_-,NA|124aa|up_6|NZ_CP017085.1_313980_314352_-,NA	NA|509aa|up_9|NZ_CP017085.1_309819_311346_+	pfam06527, TniQ, TniQ	TnsE_C|539aa|up_8|NZ_CP017085.1_311346_312963_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|126aa|up_7|NZ_CP017085.1_313193_313571_-	NA	NA|124aa|up_6|NZ_CP017085.1_313980_314352_-	NA	NA|263aa|up_5|NZ_CP017085.1_314984_315773_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_4|NZ_CP017085.1_315830_316355_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_3|NZ_CP017085.1_316449_316923_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|179aa|up_2|NZ_CP017085.1_317254_317791_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP017085.1_317905_318232_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP017085.1_318419_318659_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|359aa|down_0|NZ_CP017085.1_319587_320664_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|564aa|down_1|NZ_CP017085.1_320676_322368_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|336aa|down_2|NZ_CP017085.1_322416_323424_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|376aa|down_3|NZ_CP017085.1_323488_324616_+	TIGR03364, putative_secreted_oxidoreductase, FAD dependent oxidoreductase TIGR03364	NA|135aa|down_4|NZ_CP017085.1_324690_325095_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|96aa|down_5|NZ_CP017085.1_325122_325410_-	pfam10840, DUF2645, Protein of unknown function (DUF2645)	NA|271aa|down_6|NZ_CP017085.1_325498_326311_-	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|378aa|down_7|NZ_CP017085.1_327185_328319_+	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|469aa|down_8|NZ_CP017085.1_328328_329735_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|213aa|down_9|NZ_CP017085.1_329827_330466_-	PRK13756, PRK13756, TetR family transcriptional regulator
GCF_002310895.1_ASM231089v1	NZ_CP017085	Proteus mirabilis strain T18 chromosome, complete genome	2	2837880-2838035	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	ATAATTGCCTTTAGGTTGATATTT	24	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA|546aa|up_6|NZ_CP017085.1_2828361_2829999_-,NA|115aa|down_2|NZ_CP017085.1_2840608_2840953_-,NA|271aa|down_4|NZ_CP017085.1_2841644_2842457_-,NA|107aa|down_5|NZ_CP017085.1_2842425_2842746_-,NA|163aa|down_6|NZ_CP017085.1_2842758_2843247_-,NA|153aa|down_8|NZ_CP017085.1_2845635_2846094_-,NA|151aa|down_9|NZ_CP017085.1_2846153_2846606_-	NA|187aa|up_9|NZ_CP017085.1_2826036_2826597_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|286aa|up_8|NZ_CP017085.1_2826659_2827517_-	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed	NA|193aa|up_7|NZ_CP017085.1_2827703_2828282_+	PRK10209, PRK10209, HdeD family acid-resistance protein	NA|546aa|up_6|NZ_CP017085.1_2828361_2829999_-	NA	NA|419aa|up_5|NZ_CP017085.1_2830598_2831855_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|813aa|up_4|NZ_CP017085.1_2832207_2834646_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|206aa|up_3|NZ_CP017085.1_2834657_2835275_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|259aa|up_2|NZ_CP017085.1_2835278_2836055_+	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|181aa|up_1|NZ_CP017085.1_2836170_2836713_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|60aa|up_0|NZ_CP017085.1_2837281_2837461_+	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|219aa|down_0|NZ_CP017085.1_2838775_2839432_-	pfam11041, DUF2612, Protein of unknown function (DUF2612)	NA|396aa|down_1|NZ_CP017085.1_2839428_2840616_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|115aa|down_2|NZ_CP017085.1_2840608_2840953_-	NA	NA|231aa|down_3|NZ_CP017085.1_2840949_2841642_-	pfam18352, Gp138_N, Phage protein Gp138 N-terminal domain	NA|271aa|down_4|NZ_CP017085.1_2841644_2842457_-	NA	NA|107aa|down_5|NZ_CP017085.1_2842425_2842746_-	NA	NA|163aa|down_6|NZ_CP017085.1_2842758_2843247_-	NA	NA|768aa|down_7|NZ_CP017085.1_2843249_2845553_-	COG5412, COG5412, Phage-related protein [Function unknown]	NA|153aa|down_8|NZ_CP017085.1_2845635_2846094_-	NA	NA|151aa|down_9|NZ_CP017085.1_2846153_2846606_-	NA
GCF_002310895.1_ASM231089v1	NZ_CP017085	Proteus mirabilis strain T18 chromosome, complete genome	3	2915609-2916004	2,2,1	CRISPRCasFinder,PILER-CR,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Type I-E	CGGTTCATCCCCGTATACACGGGGAACAC,GTTCATCCCCGTATACACGGGGAACAC,CCCGTATACACGGGGAACAC	29,27,20	0	0	NA	NA	I-E:NA:NA	6,6,6	6	TypeI-E	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|221aa|up_9|NZ_CP017085.1_2904344_2905007_-	PRK11587, PRK11587, putative phosphatase; Provisional	NA|165aa|up_8|NZ_CP017085.1_2905041_2905536_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|up_7|NZ_CP017085.1_2905676_2906132_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_6|NZ_CP017085.1_2906523_2907726_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|715aa|up_5|NZ_CP017085.1_2907803_2909948_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|48aa|up_4|NZ_CP017085.1_2910284_2910428_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_3|NZ_CP017085.1_2910825_2910969_+	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|up_2|NZ_CP017085.1_2911365_2911509_+	pfam01848, HOK_GEF, Hok/gef family	NA|800aa|up_1|NZ_CP017085.1_2911739_2914139_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_0|NZ_CP017085.1_2914216_2915440_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|down_0|NZ_CP017085.1_2916062_2916359_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP017085.1_2916361_2917282_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|down_2|NZ_CP017085.1_2917282_2917960_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|down_3|NZ_CP017085.1_2917959_2918697_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|down_4|NZ_CP017085.1_2918709_2919744_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|down_5|NZ_CP017085.1_2919810_2920398_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|down_6|NZ_CP017085.1_2920384_2921983_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|down_7|NZ_CP017085.1_2921979_2924673_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_8|NZ_CP017085.1_2925991_2927248_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_9|NZ_CP017085.1_2927258_2927546_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)
GCF_002310895.1_ASM231089v1	NZ_CP017085	Proteus mirabilis strain T18 chromosome, complete genome	4	2924918-2925861	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Type I-E	CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC,CGGTTCATCCCCGTGCATACGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,15,15	15	TypeI-E	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|800aa|up_9|NZ_CP017085.1_2911739_2914139_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|408aa|up_8|NZ_CP017085.1_2914216_2915440_-	PRK13340, PRK13340, alanine racemase; Reviewed	cas2|99aa|up_7|NZ_CP017085.1_2916062_2916359_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|up_6|NZ_CP017085.1_2916361_2917282_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|226aa|up_5|NZ_CP017085.1_2917282_2917960_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|246aa|up_4|NZ_CP017085.1_2917959_2918697_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|345aa|up_3|NZ_CP017085.1_2918709_2919744_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|196aa|up_2|NZ_CP017085.1_2919810_2920398_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_1|NZ_CP017085.1_2920384_2921983_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|898aa|up_0|NZ_CP017085.1_2921979_2924673_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|419aa|down_0|NZ_CP017085.1_2925991_2927248_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|96aa|down_1|NZ_CP017085.1_2927258_2927546_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|148aa|down_2|NZ_CP017085.1_2927575_2928019_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|349aa|down_3|NZ_CP017085.1_2928245_2929292_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|181aa|down_4|NZ_CP017085.1_2929288_2929831_-	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|205aa|down_5|NZ_CP017085.1_2930027_2930642_+	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|302aa|down_6|NZ_CP017085.1_2930706_2931612_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|194aa|down_7|NZ_CP017085.1_2931631_2932213_-	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|506aa|down_8|NZ_CP017085.1_2932334_2933852_-	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|164aa|down_9|NZ_CP017085.1_2933882_2934374_-	PRK10845, PRK10845, colicin V production protein; Provisional
GCF_002310895.1_ASM231089v1	NZ_CP017085	Proteus mirabilis strain T18 chromosome, complete genome	5	3169782-3169924	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	GGTGATATCAATTTCACAGGTGG	23	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,TnsE_C,DEDDh,DinG,PD-DExK,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA|74aa|up_7|NZ_CP017085.1_3160452_3160674_+,NA|143aa|up_6|NZ_CP017085.1_3160741_3161170_+,NA|68aa|up_0|NZ_CP017085.1_3167866_3168070_+,NA	NA|219aa|up_9|NZ_CP017085.1_3158533_3159190_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|300aa|up_8|NZ_CP017085.1_3159350_3160250_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|74aa|up_7|NZ_CP017085.1_3160452_3160674_+	NA	NA|143aa|up_6|NZ_CP017085.1_3160741_3161170_+	NA	NA|245aa|up_5|NZ_CP017085.1_3161337_3162072_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|up_4|NZ_CP017085.1_3162162_3162786_-	PRK09304, PRK09304, arginine exporter ArgO	NA|287aa|up_3|NZ_CP017085.1_3162954_3163815_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|124aa|up_2|NZ_CP017085.1_3163906_3164278_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_1|NZ_CP017085.1_3164448_3167046_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|68aa|up_0|NZ_CP017085.1_3167866_3168070_+	NA	NA|476aa|down_0|NZ_CP017085.1_3182373_3183801_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|622aa|down_1|NZ_CP017085.1_3184002_3185868_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|889aa|down_2|NZ_CP017085.1_3185880_3188547_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|257aa|down_3|NZ_CP017085.1_3188710_3189481_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|181aa|down_4|NZ_CP017085.1_3189807_3190350_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|148aa|down_5|NZ_CP017085.1_3190560_3191004_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|368aa|down_6|NZ_CP017085.1_3191103_3192207_+	PRK10436, PRK10436, hypothetical protein; Provisional	NA|400aa|down_7|NZ_CP017085.1_3192203_3193403_+	PRK10573, PRK10573, protein transport protein HofC	NA|205aa|down_8|NZ_CP017085.1_3193680_3194295_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|251aa|down_9|NZ_CP017085.1_3194297_3195050_+	PRK05287, PRK05287, cell division protein ZapD
