The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023410	Clostridium perfringens strain LLY_N11 chromosome, complete genome	3346739	1287040	1300295	3346739	tRNA	Clostridium_phage(22.22%)	12	NA	NA
WP_003481618.1|1287040_1288624_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SGN0	Hokovirus	25.4	1.9e-43
WP_003451999.1|1288811_1290110_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	39.3	3.6e-69
WP_003456055.1|1290535_1291549_+	DUF348 domain-containing protein	NA	A0A143FMI2	Bacillus_phage	52.0	3.5e-19
WP_003468317.1|1291772_1292060_+	thiamine-binding protein	NA	NA	NA	NA	NA
WP_057231623.1|1292156_1293170_+	N-acetylmuramoyl-L-alanine amidase	NA	Q8SBN4	Clostridium_phage	63.4	1.2e-120
WP_003465542.1|1293308_1294019_+	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	31.8	2.5e-32
WP_096071490.1|1294012_1295335_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	37.3	2.3e-71
WP_003457231.1|1295505_1296381_+	MBL fold metallo-hydrolase	NA	Q332C0	Clostridium_botulinum_C_phage	50.2	1.1e-64
WP_003457240.1|1296705_1297209_+	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	37.2	1.1e-13
WP_003474040.1|1297420_1298773_-	PFL family protein	NA	NA	NA	NA	NA
WP_003454568.1|1298789_1299059_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_003457168.1|1299257_1300295_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	36.0	5.4e-31
>prophage 2
NZ_CP023410	Clostridium perfringens strain LLY_N11 chromosome, complete genome	3346739	1938698	1974487	3346739	capsid,terminase,holin	Clostridium_phage(86.67%)	49	NA	NA
WP_003460274.1|1938698_1939115_-|holin	phage holin family protein	holin	M9Q253	Clostridium_phage	99.3	4.0e-70
WP_078233613.1|1945041_1945422_-	DUF1617 family protein	NA	M9Q2L1	Clostridium_phage	93.7	2.2e-59
WP_078233612.1|1945490_1945757_-	hypothetical protein	NA	M9Q1I4	Clostridium_phage	86.4	1.4e-36
WP_078233611.1|1945777_1946131_-	hypothetical protein	NA	M9Q2F8	Clostridium_phage	95.5	1.9e-57
WP_078233610.1|1946134_1949350_-	hypothetical protein	NA	M9Q251	Clostridium_phage	90.6	0.0e+00
WP_078233609.1|1949390_1949723_-	hypothetical protein	NA	M9Q2I4	Clostridium_phage	92.7	6.7e-52
WP_078233608.1|1949712_1950081_-	hypothetical protein	NA	M9Q2L0	Clostridium_phage	74.6	9.1e-42
WP_078233607.1|1950096_1950549_-	hypothetical protein	NA	M9Q1I1	Clostridium_phage	92.3	3.8e-74
WP_011590476.1|1950558_1950945_-	hypothetical protein	NA	M9Q2F6	Clostridium_phage	96.9	5.0e-67
WP_078233606.1|1950944_1951328_-	hypothetical protein	NA	M9Q249	Clostridium_phage	97.6	8.0e-65
WP_011590474.1|1951327_1951654_-	hypothetical protein	NA	M9Q2I3	Clostridium_phage	99.1	5.2e-57
WP_011590473.1|1951657_1952020_-	hypothetical protein	NA	M9Q2K9	Clostridium_phage	98.3	3.9e-61
WP_003460293.1|1952055_1952325_-	hypothetical protein	NA	M9Q1H8	Clostridium_phage	100.0	3.4e-22
WP_078233605.1|1952341_1953247_-|capsid	capsid protein	capsid	M9Q2F4	Clostridium_phage	98.0	8.2e-169
WP_096071611.1|1953270_1953879_-	hypothetical protein	NA	M9Q248	Clostridium_phage	88.6	3.7e-80
WP_096071612.1|1953993_1954959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096071613.1|1955017_1956262_-|capsid	capsid protein	capsid	M9Q2F2	Clostridium_phage	91.0	2.0e-218
WP_078233601.1|1956245_1957766_-|capsid	capsid protein	capsid	M9Q246	Clostridium_phage	96.8	6.4e-283
WP_096071614.1|1957767_1957977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096071615.1|1957979_1959347_-|terminase	terminase	terminase	M9Q2I1	Clostridium_phage	97.4	3.2e-265
WP_078233599.1|1959339_1959768_-|terminase	terminase small subunit	terminase	A0A0A8WDX8	Clostridium_phage	52.1	4.2e-30
WP_078233598.1|1959760_1960054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233597.1|1960115_1960334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233596.1|1960809_1961256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233595.1|1961310_1961844_-	hypothetical protein	NA	Q8SBL1	Clostridium_phage	34.9	3.2e-19
WP_078233594.1|1961853_1962045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233593.1|1962046_1962232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233592.1|1962231_1962603_-	hypothetical protein	NA	B4XYT8	Lactobacillus_phage	36.6	2.6e-12
WP_078233591.1|1962595_1962850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233590.1|1962850_1963267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233589.1|1963415_1963736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233588.1|1963738_1963942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233587.1|1963944_1964253_-	hypothetical protein	NA	M9Q2L5	Clostridium_phage	54.2	8.7e-22
WP_078233586.1|1964286_1964499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233585.1|1964500_1965220_-	hypothetical protein	NA	A0A2P1JTY8	Anoxybacillus_phage	57.0	2.0e-32
WP_078233584.1|1965232_1965415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233583.1|1965426_1966209_-	hypothetical protein	NA	A0A0A7RUC1	Clostridium_phage	67.3	1.8e-100
WP_078233581.1|1967084_1968767_-	AAA family ATPase	NA	R9TQJ2	Paenibacillus_phage	41.6	1.8e-108
WP_003449265.1|1969111_1969357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233580.1|1969359_1969539_-	hypothetical protein	NA	I2E8Z1	Clostridium_phage	36.8	1.5e-05
WP_078233579.1|1969528_1969762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233578.1|1969775_1969955_-	hypothetical protein	NA	M9Q2G4	Clostridium_phage	81.4	2.6e-18
WP_153302651.1|1969948_1970119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233577.1|1970306_1970516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153302650.1|1970487_1970655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078233576.1|1970696_1971446_-	hypothetical protein	NA	A0A2D1GQG9	Lysinibacillus_phage	45.1	9.5e-46
WP_078233575.1|1971456_1971672_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_078233573.1|1972402_1972918_+	ImmA/IrrE family metallo-endopeptidase	NA	Q8SBN1	Clostridium_phage	46.1	4.4e-34
WP_078233572.1|1972990_1974487_+	recombinase family protein	NA	M9Q2G2	Clostridium_phage	32.6	8.5e-62
>prophage 3
NZ_CP023410	Clostridium perfringens strain LLY_N11 chromosome, complete genome	3346739	2473441	2486031	3346739		Synechococcus_phage(25.0%)	9	NA	NA
WP_011590302.1|2473441_2474947_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	1.2e-66
WP_003468450.1|2474959_2475574_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.3	2.2e-24
WP_003468449.1|2475561_2476563_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	49.0	6.7e-71
WP_011009969.1|2476563_2478009_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	33.0	1.4e-56
WP_003456948.1|2478030_2478738_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4SM18	Cyanophage	43.8	2.8e-47
WP_003453078.1|2478737_2479217_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	47.4	2.6e-28
WP_003457110.1|2479527_2483328_-	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.9	4.7e-32
WP_003456962.1|2483565_2484876_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_003457021.1|2485380_2486031_-	aminotransferase	NA	A0A1B1P8C0	Bacillus_phage	31.1	2.9e-14
>prophage 4
NZ_CP023410	Clostridium perfringens strain LLY_N11 chromosome, complete genome	3346739	2521465	2549920	3346739	integrase,transposase	Streptococcus_phage(80.95%)	42	2513217:2513233	2554844:2554860
2513217:2513233	attL	TTCTATATAATTCTTCT	NA	NA	NA	NA
WP_032547211.1|2521465_2521792_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	65.7	2.5e-35
WP_054344453.1|2521808_2522195_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	65.4	1.7e-38
WP_069432092.1|2522394_2523036_+	chloramphenicol acetyltransferase	NA	A0A1X9I6V6	Streptococcus_phage	32.5	1.8e-32
WP_069432091.1|2523110_2524490_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	64.2	7.3e-169
WP_069432098.1|2524497_2524902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110077255.1|2525112_2526333_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	63.0	2.8e-148
WP_010817889.1|2526348_2526489_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_010817890.1|2526485_2526707_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	91.8	6.2e-30
WP_010817891.1|2526904_2527315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078233396.1|2527331_2527778_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_076779928.1|2527804_2528218_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_010817896.1|2528341_2528578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010817897.1|2528552_2529050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010817898.1|2529067_2529571_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.0	1.1e-53
WP_010817899.1|2529681_2530071_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	6.9e-48
WP_010817900.1|2530057_2532505_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.3	0.0e+00
WP_010817901.1|2532504_2534631_+	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	63.3	1.5e-192
WP_078233395.1|2534627_2535635_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	72.6	6.6e-127
WP_010817903.1|2535650_2536544_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.7	2.0e-79
WP_010817904.1|2536671_2537046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010817905.1|2537047_2537905_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	1.3e-22
WP_010817906.1|2537907_2538549_+	ABC-2 transporter permease	NA	NA	NA	NA	NA
WP_010817907.1|2538566_2538953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002576326.1|2539269_2539623_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	40.7	2.7e-19
WP_009246557.1|2539788_2539986_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002576325.1|2539975_2540590_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002576324.1|2540770_2541688_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.2	6.0e-42
WP_002576323.1|2541680_2542430_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002576322.1|2542429_2543257_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_078233394.1|2543424_2543907_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
WP_050563598.1|2543929_2544337_+	winged helix-turn-helix domain-containing protein	NA	W8CYM9	Bacillus_phage	33.7	4.0e-06
WP_010817908.1|2544477_2544717_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_078234315.1|2544721_2545324_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_078233393.1|2545376_2545775_+	winged helix-turn-helix transcriptional regulator	NA	W8CYM9	Bacillus_phage	33.3	9.6e-05
WP_010817911.1|2545814_2546177_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_025189641.1|2546328_2546553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010817913.1|2546572_2546938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010817914.1|2547377_2547803_+	DNA-directed RNA polymerase sigma-70 factor	NA	A0A1S5SEW0	Streptococcus_phage	38.3	4.4e-16
WP_010817915.1|2547792_2548038_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	44.9	4.2e-11
WP_074087813.1|2548123_2548348_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_010817916.1|2548437_2548644_+	excisionase family DNA-binding domain-containing protein	NA	A0A1S5SF07	Streptococcus_phage	82.8	1.3e-24
WP_010817917.1|2548723_2549920_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.0	1.4e-155
2554844:2554860	attR	TTCTATATAATTCTTCT	NA	NA	NA	NA
>prophage 1
NZ_CP023413	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_3, complete sequence	72060	0	10014	72060	integrase	Bacillus_phage(33.33%)	9	NA	NA
WP_004456826.1|790_1075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003465044.1|1075_1387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004456857.1|1762_2563_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_004456849.1|2624_4214_+	DUF87 domain-containing protein	NA	M4ZS25	Bacillus_phage	29.8	4.0e-17
WP_025648669.1|4390_5470_+	TcpC	NA	NA	NA	NA	NA
WP_025648670.1|5481_5829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003453383.1|5840_6209_+	TcpE	NA	NA	NA	NA	NA
WP_096071800.1|6484_9010_+	TcpF	NA	A0A1S5SF64	Streptococcus_phage	27.3	1.2e-68
WP_003464374.1|9009_10014_+	cell wall-binding protein	NA	A0A0A7RUS8	Clostridium_phage	50.0	3.1e-36
>prophage 2
NZ_CP023413	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_3, complete sequence	72060	15147	16167	72060		Bacillus_phage(100.0%)	1	NA	NA
WP_003464366.1|15147_16167_+	DNA (cytosine-5-)-methyltransferase	NA	A0A0E3DF50	Bacillus_phage	39.6	1.5e-57
>prophage 3
NZ_CP023413	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_3, complete sequence	72060	22347	29631	72060	transposase	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(33.33%)	5	NA	NA
WP_003474254.1|22347_23205_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	30.3	1.6e-17
WP_003479690.1|23959_25222_+	tetracycline efflux MFS transporter TetA(P)	NA	NA	NA	NA	NA
WP_003479689.1|25205_27164_+	tetracycline resistance ribosomal protection protein TetB(P)	NA	D0R0F5	Streptococcus_phage	40.4	1.6e-124
WP_003479688.1|27355_27634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003479685.1|28896_29631_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	39.5	1.4e-17
>prophage 4
NZ_CP023413	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_3, complete sequence	72060	36775	37636	72060	transposase	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(100.0%)	1	NA	NA
WP_015060558.1|36775_37636_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	31.0	1.1e-18
>prophage 5
NZ_CP023413	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_3, complete sequence	72060	45695	46466	72060		Bacillus_virus(100.0%)	1	NA	NA
WP_096071807.1|45695_46466_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	35.7	4.0e-15
>prophage 6
NZ_CP023413	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_3, complete sequence	72060	58348	62526	72060		Bacillus_phage(50.0%)	6	NA	NA
WP_015060513.1|58348_58879_+	transcriptional regulator	NA	D2XR36	Bacillus_phage	46.6	9.8e-05
WP_003474956.1|59164_59392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025648664.1|59457_59952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003448998.1|60008_60272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096071811.1|60250_61177_-	ParM/StbA family protein	NA	NA	NA	NA	NA
WP_096071812.1|61713_62526_+	plasmid replication protein	NA	Q0SPH7	Clostridium_phage	54.2	2.1e-67
>prophage 7
NZ_CP023413	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_3, complete sequence	72060	65876	66251	72060		Lactobacillus_phage(100.0%)	1	NA	NA
WP_003474966.1|65876_66251_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A291I9M9	Lactobacillus_phage	33.3	2.0e-12
