assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002334625.1_ASM233462v1	NZ_CP023423	Enterococcus faecium strain K60-39 chromosome, complete genome	1	2294943-2295052	1	CRISPRCasFinder	no		cas3,DEDDh,cas2,DinG,csa3,RT	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,DinG,csa3,RT,cas14j	NA,NA	NA|75aa|up_9|NZ_CP023423.1_2283148_2283373_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|720aa|up_8|NZ_CP023423.1_2283531_2285691_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_7|NZ_CP023423.1_2285740_2286706_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|238aa|up_6|NZ_CP023423.1_2288241_2288955_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP023423.1_2289208_2289910_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP023423.1_2290143_2291676_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP023423.1_2291866_2293069_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP023423.1_2293150_2293840_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP023423.1_2293945_2294314_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP023423.1_2294366_2294870_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP023423.1_2295279_2295969_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP023423.1_2296072_2296495_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP023423.1_2296837_2297506_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP023423.1_2297518_2298391_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP023423.1_2298481_2299501_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP023423.1_2299673_2300561_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP023423.1_2300637_2301183_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP023423.1_2301283_2301454_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP023423.1_2301477_2301630_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP023423.1_2301791_2302436_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_002334625.1_ASM233462v1	NZ_CP023424	Enterococcus faecium strain K60-39 plasmid pTT39_p1, complete sequence	1	430-557	1	CRISPRCasFinder	no		RT,cas14j	Orphan	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,cas2,DinG,csa3,RT,cas14j	NA,NA|111aa|down_0|NZ_CP023424.1_1864_2197_+,NA|80aa|down_3|NZ_CP023424.1_5053_5293_+,NA|70aa|down_4|NZ_CP023424.1_5359_5569_+,NA|254aa|down_8|NZ_CP023424.1_9111_9873_+,NA|87aa|down_9|NZ_CP023424.1_9885_10146_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP023424.1_1864_2197_+	NA	NA|114aa|down_1|NZ_CP023424.1_2815_3157_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|417aa|down_2|NZ_CP023424.1_3393_4644_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|80aa|down_3|NZ_CP023424.1_5053_5293_+	NA	NA|70aa|down_4|NZ_CP023424.1_5359_5569_+	NA	NA|224aa|down_5|NZ_CP023424.1_5628_6300_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|659aa|down_6|NZ_CP023424.1_6352_8329_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|251aa|down_7|NZ_CP023424.1_8343_9096_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|254aa|down_8|NZ_CP023424.1_9111_9873_+	NA	NA|87aa|down_9|NZ_CP023424.1_9885_10146_+	NA
GCF_002334625.1_ASM233462v1	NZ_CP023424	Enterococcus faecium strain K60-39 plasmid pTT39_p1, complete sequence	2	161391-161501	2	CRISPRCasFinder	no		RT,cas14j	Orphan	ACAACTCATCAGTCCTTATTGACAAAGAGCC	31	1	9	161422-161470|161422-161470|161422-161470|161422-161470|161422-161470|161422-161470|161422-161470|161422-161470|161422-161470	NZ_CP023423.1_982903-982855|NZ_CP023423.1_1089039-1088991|NZ_CP023423.1_1807194-1807242|NZ_CP023423.1_1828996-1829044|NZ_CP023423.1_1889098-1889146|NZ_CP023423.1_2024930-2024978|NZ_CP023423.1_2120323-2120371|NZ_CP023423.1_2339814-2339862|NZ_CP023425.1_69747-69795	NA	1	1	Orphan	cas3,DEDDh,cas2,DinG,csa3,RT,cas14j	NA|311aa|up_9|NZ_CP023424.1_144057_144990_-,NA	NA|311aa|up_9|NZ_CP023424.1_144057_144990_-	NA	NA|554aa|up_8|NZ_CP023424.1_145029_146691_-	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|994aa|up_7|NZ_CP023424.1_146687_149669_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|638aa|up_6|NZ_CP023424.1_149796_151710_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|204aa|up_5|NZ_CP023424.1_151739_152351_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|304aa|up_4|NZ_CP023424.1_153896_154808_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|313aa|up_3|NZ_CP023424.1_154819_155758_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|525aa|up_2|NZ_CP023424.1_155986_157561_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|243aa|up_1|NZ_CP023424.1_157538_158267_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|425aa|up_0|NZ_CP023424.1_158649_159924_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|112aa|down_0|NZ_CP023424.1_161517_161853_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_1|NZ_CP023424.1_161836_162109_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|268aa|down_2|NZ_CP023424.1_162559_163363_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|375aa|down_3|NZ_CP023424.1_163340_164465_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|272aa|down_4|NZ_CP023424.1_164480_165296_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_5|NZ_CP023424.1_165285_166167_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|430aa|down_6|NZ_CP023424.1_166242_167532_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|499aa|down_7|NZ_CP023424.1_168880_170377_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|400aa|down_8|NZ_CP023424.1_170348_171548_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|459aa|down_9|NZ_CP023424.1_171677_173054_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
