assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	1	30133-30630	1	CRT	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	CTGGTCGTAGCCNNGCTGCTG	21	0	0	NA	NA	NA	8	8	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA,NA|207aa|down_0|NZ_CP023445.1_31712_32333_+,NA|121aa|down_8|NZ_CP023445.1_40228_40591_-,NA|108aa|down_9|NZ_CP023445.1_40604_40928_-	NA|89aa|up_9|NZ_CP023445.1_17104_17371_-	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed	NA|260aa|up_8|NZ_CP023445.1_18013_18793_+	cd05830, Sortase_E, Sortase domain found in the class E family of sortases	NA|449aa|up_7|NZ_CP023445.1_18999_20346_-	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|214aa|up_6|NZ_CP023445.1_20411_21053_+	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II	NA|682aa|up_5|NZ_CP023445.1_21167_23213_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|553aa|up_4|NZ_CP023445.1_23293_24952_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|489aa|up_3|NZ_CP023445.1_24951_26418_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|488aa|up_2|NZ_CP023445.1_26414_27878_-	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|475aa|up_1|NZ_CP023445.1_27881_29306_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|155aa|up_0|NZ_CP023445.1_29302_29767_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|207aa|down_0|NZ_CP023445.1_31712_32333_+	NA	NA|212aa|down_1|NZ_CP023445.1_32383_33019_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|426aa|down_2|NZ_CP023445.1_33231_34509_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|396aa|down_3|NZ_CP023445.1_34592_35780_+	cd06813, PLPDE_III_DSD_D-TA_like_2, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2	NA|222aa|down_4|NZ_CP023445.1_35776_36442_-	pfam17928, TetR_C_22, Tetracyclin repressor-like, C-terminal domain	NA|420aa|down_5|NZ_CP023445.1_36528_37788_+	TIGR03356, BGL, beta-galactosidase	NA|389aa|down_6|NZ_CP023445.1_37925_39092_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|256aa|down_7|NZ_CP023445.1_39088_39856_+	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs	NA|121aa|down_8|NZ_CP023445.1_40228_40591_-	NA	NA|108aa|down_9|NZ_CP023445.1_40604_40928_-	NA
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	2	892043-892135	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GGCGGTCGCCCCGGTGACCCCCGCGTCC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA,NA|151aa|down_5|NZ_CP023445.1_899164_899617_-,NA|108aa|down_7|NZ_CP023445.1_901811_902135_-	NA|115aa|up_9|NZ_CP023445.1_880482_880827_-	pfam16170, DUF4873, Domain of unknown function (DUF4873)	NA|272aa|up_8|NZ_CP023445.1_880823_881639_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|300aa|up_7|NZ_CP023445.1_881700_882600_+	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF	NA|215aa|up_6|NZ_CP023445.1_882753_883398_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|345aa|up_5|NZ_CP023445.1_883509_884544_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|345aa|up_4|NZ_CP023445.1_884614_885649_+	pfam11350, DUF3152, Protein of unknown function (DUF3152)	NA|391aa|up_3|NZ_CP023445.1_885783_886956_+	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated	NA|266aa|up_2|NZ_CP023445.1_887476_888274_+	TIGR02569, conserved_hypothetical_protein, TIGR02569 family protein	NA|678aa|up_1|NZ_CP023445.1_888406_890440_+	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|479aa|up_0|NZ_CP023445.1_890582_892019_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|451aa|down_0|NZ_CP023445.1_892260_893613_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|835aa|down_1|NZ_CP023445.1_894007_896512_+	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional	NA|113aa|down_2|NZ_CP023445.1_896508_896847_+	cd03529, Rieske_NirD, Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium	NA|366aa|down_3|NZ_CP023445.1_896972_898070_+	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated	NA|242aa|down_4|NZ_CP023445.1_898066_898792_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|151aa|down_5|NZ_CP023445.1_899164_899617_-	NA	NA|226aa|down_6|NZ_CP023445.1_899741_900419_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|108aa|down_7|NZ_CP023445.1_901811_902135_-	NA	NA|360aa|down_8|NZ_CP023445.1_902229_903309_-	pfam02254, TrkA_N, TrkA-N domain	NA|480aa|down_9|NZ_CP023445.1_903308_904748_-	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	3	1316575-1316671	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GGGCCTTCCCCGCGCACGCGGGGGTGTTCCGGCGGG	36	0	0	NA	NA	I-C,I-E,II-B	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA,NA	NA|147aa|up_9|NZ_CP023445.1_1304289_1304730_-	PTZ00395, PTZ00395, Sec24-related protein; Provisional	NA|574aa|up_8|NZ_CP023445.1_1304803_1306525_-	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins	NA|252aa|up_7|NZ_CP023445.1_1306768_1307524_+	TIGR03936, radical_SAM-linked_protein, radical SAM-linked protein	NA|972aa|up_6|NZ_CP023445.1_1307715_1310631_+	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|104aa|up_5|NZ_CP023445.1_1311101_1311413_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|88aa|up_4|NZ_CP023445.1_1311427_1311691_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|489aa|up_3|NZ_CP023445.1_1311803_1313270_+	PRK12296, obgE, GTPase CgtA; Reviewed	NA|371aa|up_2|NZ_CP023445.1_1313290_1314403_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|427aa|up_1|NZ_CP023445.1_1314463_1315744_-	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|182aa|up_0|NZ_CP023445.1_1315822_1316368_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|692aa|down_0|NZ_CP023445.1_1316834_1318910_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|424aa|down_1|NZ_CP023445.1_1318991_1320263_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|395aa|down_2|NZ_CP023445.1_1320377_1321562_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|74aa|down_3|NZ_CP023445.1_1321564_1321786_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|198aa|down_4|NZ_CP023445.1_1321860_1322454_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|149aa|down_5|NZ_CP023445.1_1322578_1323025_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|205aa|down_6|NZ_CP023445.1_1323021_1323636_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|244aa|down_7|NZ_CP023445.1_1323632_1324364_+	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	NA|281aa|down_8|NZ_CP023445.1_1324375_1325218_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|225aa|down_9|NZ_CP023445.1_1325379_1326054_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	4	1354815-1354960	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GTCTTCCCCGCGCGGGCGGGGGTG	24	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|83aa|up_3|NZ_CP023445.1_1353465_1353714_+,NA|53aa|down_7|NZ_CP023445.1_1361562_1361721_-	NA|512aa|up_9|NZ_CP023445.1_1345596_1347132_+	cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD)	NA|347aa|up_8|NZ_CP023445.1_1347217_1348258_+	pfam03060, NMO, Nitronate monooxygenase	NA|527aa|up_7|NZ_CP023445.1_1348348_1349929_+	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|491aa|up_6|NZ_CP023445.1_1349920_1351393_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|256aa|up_5|NZ_CP023445.1_1351630_1352398_+	PRK07827, PRK07827, enoyl-CoA hydratase family protein	NA|323aa|up_4|NZ_CP023445.1_1352430_1353399_-	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family	NA|83aa|up_3|NZ_CP023445.1_1353465_1353714_+	NA	NA|147aa|up_2|NZ_CP023445.1_1353723_1354164_+	cd00607, RNase_Sa, RNase_Sa	NA|113aa|up_1|NZ_CP023445.1_1354160_1354499_+	pfam01337, Barstar, Barstar (barnase inhibitor)	NA|68aa|up_0|NZ_CP023445.1_1354566_1354770_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|243aa|down_0|NZ_CP023445.1_1355007_1355736_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|285aa|down_1|NZ_CP023445.1_1355744_1356599_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|263aa|down_2|NZ_CP023445.1_1356702_1357491_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|353aa|down_3|NZ_CP023445.1_1357521_1358580_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|445aa|down_4|NZ_CP023445.1_1358639_1359974_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|305aa|down_5|NZ_CP023445.1_1359974_1360889_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|229aa|down_6|NZ_CP023445.1_1360870_1361557_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|53aa|down_7|NZ_CP023445.1_1361562_1361721_-	NA	NA|575aa|down_8|NZ_CP023445.1_1361717_1363442_-	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|405aa|down_9|NZ_CP023445.1_1363838_1365053_+	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	5	2537358-2537428	4	CRISPRCasFinder	no	WYL	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Unclear	CAGCCCGCGAAGTGGTCAGCCCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|94aa|up_5|NZ_CP023445.1_2528565_2528847_+,NA	NA|453aa|up_9|NZ_CP023445.1_2523802_2525161_+	TIGR03686, pupylate_PafA, Pup--protein ligase	NA|295aa|up_8|NZ_CP023445.1_2525306_2526191_+	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	WYL|328aa|up_7|NZ_CP023445.1_2526594_2527578_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	WYL|322aa|up_6|NZ_CP023445.1_2527574_2528540_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|94aa|up_5|NZ_CP023445.1_2528565_2528847_+	NA	NA|116aa|up_4|NZ_CP023445.1_2528824_2529172_+	PRK00575, tatA, Sec-independent protein translocase subunit TatA	NA|371aa|up_3|NZ_CP023445.1_2529314_2530427_+	pfam00902, TatC, Sec-independent protein translocase protein (TatC)	NA|301aa|up_2|NZ_CP023445.1_2530677_2531580_+	PRK11914, PRK11914, diacylglycerol kinase; Reviewed	NA|979aa|up_1|NZ_CP023445.1_2531757_2534694_+	COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]	NA|229aa|up_0|NZ_CP023445.1_2534832_2535519_+	pfam14230, DUF4333, Domain of unknown function (DUF4333)	NA|315aa|down_0|NZ_CP023445.1_2537455_2538400_-	smart00475, 53EXOc, 5'-3' exonuclease	NA|377aa|down_1|NZ_CP023445.1_2538506_2539637_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|147aa|down_2|NZ_CP023445.1_2539642_2540083_+	smart00344, HTH_ASNC, helix_turn_helix ASNC type	NA|249aa|down_3|NZ_CP023445.1_2540126_2540873_-	PRK09266, PRK09266, hypothetical protein; Provisional	NA|400aa|down_4|NZ_CP023445.1_2541101_2542301_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|409aa|down_5|NZ_CP023445.1_2542665_2543892_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|1116aa|down_6|NZ_CP023445.1_2544056_2547404_+	sd00006, TPR, Tetratricopeptide repeat	NA|316aa|down_7|NZ_CP023445.1_2547414_2548362_-	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC	NA|513aa|down_8|NZ_CP023445.1_2548372_2549911_-	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]	NA|562aa|down_9|NZ_CP023445.1_2550085_2551771_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	6	2908156-2908244	5	CRISPRCasFinder	no	cas3	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Unclear	CCGCCCCCGCTTCCACCCGCTCCGCCC	27	0	0	NA	NA	NA	1	1	Unclear	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|285aa|up_9|NZ_CP023445.1_2895373_2896228_-,NA|200aa|up_4|NZ_CP023445.1_2903185_2903785_+,NA	NA|285aa|up_9|NZ_CP023445.1_2895373_2896228_-	NA	NA|271aa|up_8|NZ_CP023445.1_2896292_2897105_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|373aa|up_7|NZ_CP023445.1_2897298_2898417_+	pfam00089, Trypsin, Trypsin	NA|1029aa|up_6|NZ_CP023445.1_2898490_2901577_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|319aa|up_5|NZ_CP023445.1_2901941_2902898_-	PRK07877, PRK07877, Rv1355c family protein	NA|200aa|up_4|NZ_CP023445.1_2903185_2903785_+	NA	NA|478aa|up_3|NZ_CP023445.1_2903899_2905333_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|166aa|up_2|NZ_CP023445.1_2905433_2905931_+	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|305aa|up_1|NZ_CP023445.1_2906105_2907020_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|371aa|up_0|NZ_CP023445.1_2907038_2908151_+	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins	NA|719aa|down_0|NZ_CP023445.1_2908663_2910820_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|168aa|down_1|NZ_CP023445.1_2911913_2912417_+	pfam14317, YcxB, YcxB-like protein	NA|393aa|down_2|NZ_CP023445.1_2913729_2914908_-	smart00458, RICIN, Ricin-type beta-trefoil	NA|187aa|down_3|NZ_CP023445.1_2915127_2915688_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|313aa|down_4|NZ_CP023445.1_2915791_2916730_+	PRK06196, PRK06196, oxidoreductase; Provisional	NA|593aa|down_5|NZ_CP023445.1_2916751_2918530_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|223aa|down_6|NZ_CP023445.1_2918600_2919269_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|282aa|down_7|NZ_CP023445.1_2919348_2920194_+	pfam11350, DUF3152, Protein of unknown function (DUF3152)	NA|657aa|down_8|NZ_CP023445.1_2920288_2922259_-	pfam14587, Glyco_hydr_30_2, O-Glycosyl hydrolase family 30	NA|851aa|down_9|NZ_CP023445.1_2923274_2925827_+	pfam13208, TerB_N, TerB N-terminal domain
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	7	3788681-3788773	6	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	CGGCCCGGTCCAGCAGCGCCCGT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|122aa|up_1|NZ_CP023445.1_3787117_3787483_+,NA|81aa|down_3|NZ_CP023445.1_3815575_3815818_-,NA|116aa|down_8|NZ_CP023445.1_3822879_3823227_+	NA|91aa|up_9|NZ_CP023445.1_3776840_3777113_+	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|372aa|up_8|NZ_CP023445.1_3777105_3778221_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|466aa|up_7|NZ_CP023445.1_3778217_3779615_+	TIGR01686, modular_polyketide_synthase, FkbH-like domain	NA|221aa|up_6|NZ_CP023445.1_3779607_3780270_+	pfam01596, Methyltransf_3, O-methyltransferase	NA|946aa|up_5|NZ_CP023445.1_3780351_3783189_+	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain	NA|379aa|up_4|NZ_CP023445.1_3783214_3784351_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|116aa|up_3|NZ_CP023445.1_3784364_3784712_-	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|671aa|up_2|NZ_CP023445.1_3784927_3786940_+	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]	NA|122aa|up_1|NZ_CP023445.1_3787117_3787483_+	NA	NA|300aa|up_0|NZ_CP023445.1_3787578_3788478_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|389aa|down_0|NZ_CP023445.1_3789396_3790563_+	pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family	NA|4685aa|down_1|NZ_CP023445.1_3790893_3804948_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|403aa|down_2|NZ_CP023445.1_3814271_3815480_+	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins	NA|81aa|down_3|NZ_CP023445.1_3815575_3815818_-	NA	NA|342aa|down_4|NZ_CP023445.1_3815997_3817023_+	cd05360, SDR_c3, classical (c) SDR, subgroup 3	NA|155aa|down_5|NZ_CP023445.1_3817077_3817542_-	pfam14325, DUF4383, Domain of unknown function (DUF4383)	NA|1006aa|down_6|NZ_CP023445.1_3818416_3821434_+	cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)	NA|349aa|down_7|NZ_CP023445.1_3821473_3822520_-	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	NA|116aa|down_8|NZ_CP023445.1_3822879_3823227_+	NA	NA|191aa|down_9|NZ_CP023445.1_3823211_3823784_-	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	8	5326850-5327067	7	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GCGGGTGGTGCCGCCGAGCGGGTCGGTC	28	0	0	NA	NA	NA	3	3	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|420aa|up_6|NZ_CP023445.1_5319150_5320410_-,NA|125aa|up_2|NZ_CP023445.1_5323622_5323997_+,NA|118aa|up_1|NZ_CP023445.1_5324003_5324357_-,NA|160aa|up_0|NZ_CP023445.1_5324343_5324823_-,NA|209aa|down_2|NZ_CP023445.1_5333519_5334146_-,NA|107aa|down_3|NZ_CP023445.1_5334142_5334463_-,NA|516aa|down_7|NZ_CP023445.1_5335636_5337184_+,NA|120aa|down_8|NZ_CP023445.1_5337168_5337528_+,NA|440aa|down_9|NZ_CP023445.1_5337516_5338836_-	NA|334aa|up_9|NZ_CP023445.1_5316068_5317070_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|354aa|up_8|NZ_CP023445.1_5317101_5318163_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|332aa|up_7|NZ_CP023445.1_5318165_5319161_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|420aa|up_6|NZ_CP023445.1_5319150_5320410_-	NA	NA|81aa|up_5|NZ_CP023445.1_5320406_5320649_-	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|392aa|up_4|NZ_CP023445.1_5320705_5321881_-	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|452aa|up_3|NZ_CP023445.1_5322156_5323512_+	cd19531, LCL_NRPS-like, LCL-type Condensation (C) domain of non-ribosomal peptide synthetases(NRPSs) and similar domains including the C-domain of SgcC5, a free-standing NRPS with both ester- and amide- bond forming activity	NA|125aa|up_2|NZ_CP023445.1_5323622_5323997_+	NA	NA|118aa|up_1|NZ_CP023445.1_5324003_5324357_-	NA	NA|160aa|up_0|NZ_CP023445.1_5324343_5324823_-	NA	NA|588aa|down_0|NZ_CP023445.1_5329596_5331360_-	pfam07508, Recombinase, Recombinase	NA|675aa|down_1|NZ_CP023445.1_5331498_5333523_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|209aa|down_2|NZ_CP023445.1_5333519_5334146_-	NA	NA|107aa|down_3|NZ_CP023445.1_5334142_5334463_-	NA	NA|106aa|down_4|NZ_CP023445.1_5334459_5334777_-	pfam02467, Whib, Transcription factor WhiB	NA|60aa|down_5|NZ_CP023445.1_5334773_5334953_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|128aa|down_6|NZ_CP023445.1_5335117_5335501_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|516aa|down_7|NZ_CP023445.1_5335636_5337184_+	NA	NA|120aa|down_8|NZ_CP023445.1_5337168_5337528_+	NA	NA|440aa|down_9|NZ_CP023445.1_5337516_5338836_-	NA
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	9	5327228-5327381	8	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GCGGGTGGTGCCGCCGAGCGGGTCGGTC	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|420aa|up_6|NZ_CP023445.1_5319150_5320410_-,NA|125aa|up_2|NZ_CP023445.1_5323622_5323997_+,NA|118aa|up_1|NZ_CP023445.1_5324003_5324357_-,NA|160aa|up_0|NZ_CP023445.1_5324343_5324823_-,NA|209aa|down_2|NZ_CP023445.1_5333519_5334146_-,NA|107aa|down_3|NZ_CP023445.1_5334142_5334463_-,NA|516aa|down_7|NZ_CP023445.1_5335636_5337184_+,NA|120aa|down_8|NZ_CP023445.1_5337168_5337528_+,NA|440aa|down_9|NZ_CP023445.1_5337516_5338836_-	NA|334aa|up_9|NZ_CP023445.1_5316068_5317070_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|354aa|up_8|NZ_CP023445.1_5317101_5318163_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|332aa|up_7|NZ_CP023445.1_5318165_5319161_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|420aa|up_6|NZ_CP023445.1_5319150_5320410_-	NA	NA|81aa|up_5|NZ_CP023445.1_5320406_5320649_-	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|392aa|up_4|NZ_CP023445.1_5320705_5321881_-	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|452aa|up_3|NZ_CP023445.1_5322156_5323512_+	cd19531, LCL_NRPS-like, LCL-type Condensation (C) domain of non-ribosomal peptide synthetases(NRPSs) and similar domains including the C-domain of SgcC5, a free-standing NRPS with both ester- and amide- bond forming activity	NA|125aa|up_2|NZ_CP023445.1_5323622_5323997_+	NA	NA|118aa|up_1|NZ_CP023445.1_5324003_5324357_-	NA	NA|160aa|up_0|NZ_CP023445.1_5324343_5324823_-	NA	NA|588aa|down_0|NZ_CP023445.1_5329596_5331360_-	pfam07508, Recombinase, Recombinase	NA|675aa|down_1|NZ_CP023445.1_5331498_5333523_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|209aa|down_2|NZ_CP023445.1_5333519_5334146_-	NA	NA|107aa|down_3|NZ_CP023445.1_5334142_5334463_-	NA	NA|106aa|down_4|NZ_CP023445.1_5334459_5334777_-	pfam02467, Whib, Transcription factor WhiB	NA|60aa|down_5|NZ_CP023445.1_5334773_5334953_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|128aa|down_6|NZ_CP023445.1_5335117_5335501_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|516aa|down_7|NZ_CP023445.1_5335636_5337184_+	NA	NA|120aa|down_8|NZ_CP023445.1_5337168_5337528_+	NA	NA|440aa|down_9|NZ_CP023445.1_5337516_5338836_-	NA
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	10	6009605-6009815	1,9,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GTCTTCCCCGCACATGCGGGGGTGGTCC,GTCTTCCCCGCACATGCGGGGGTGGTCC,GTCTTCCCCGCACATGCGGGGGTGGTCC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	3,3,3	3	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|113aa|up_4|NZ_CP023445.1_6004218_6004557_-,NA	NA|56aa|up_9|NZ_CP023445.1_5996897_5997065_-	pfam05532, CsbD, CsbD-like	NA|164aa|up_8|NZ_CP023445.1_5997356_5997848_+	pfam03861, ANTAR, ANTAR domain	NA|631aa|up_7|NZ_CP023445.1_5997796_5999689_-	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase	NA|750aa|up_6|NZ_CP023445.1_5999685_6001935_-	cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase)	NA|709aa|up_5|NZ_CP023445.1_6001931_6004058_-	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|113aa|up_4|NZ_CP023445.1_6004218_6004557_-	NA	NA|621aa|up_3|NZ_CP023445.1_6004661_6006524_-	PRK14507, PRK14507, malto-oligosyltrehalose synthase	NA|321aa|up_2|NZ_CP023445.1_6006929_6007892_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|153aa|up_1|NZ_CP023445.1_6008002_6008461_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|317aa|up_0|NZ_CP023445.1_6008464_6009415_-	TIGR03841, F420_Rv3093c, probable F420-dependent oxidoreductase, Rv3093c family	NA|253aa|down_0|NZ_CP023445.1_6009942_6010701_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|694aa|down_1|NZ_CP023445.1_6011400_6013482_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|348aa|down_2|NZ_CP023445.1_6013824_6014868_-	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|244aa|down_3|NZ_CP023445.1_6014880_6015612_-	PRK09648, PRK09648, RNA polymerase sigma factor ShbA	NA|273aa|down_4|NZ_CP023445.1_6016052_6016871_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|62aa|down_5|NZ_CP023445.1_6016922_6017108_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|185aa|down_6|NZ_CP023445.1_6017112_6017667_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|299aa|down_7|NZ_CP023445.1_6017659_6018556_-	PRK09986, PRK09986, LysR family transcriptional regulator	NA|247aa|down_8|NZ_CP023445.1_6018652_6019393_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|255aa|down_9|NZ_CP023445.1_6019430_6020195_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	11	6861456-6861566	10	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	CGCTGTCCCAGCCGCACCGATCCCCG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|109aa|up_8|NZ_CP023445.1_6852828_6853155_+,NA|84aa|down_4|NZ_CP023445.1_6865900_6866152_-	NA|211aa|up_9|NZ_CP023445.1_6852149_6852782_+	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|109aa|up_8|NZ_CP023445.1_6852828_6853155_+	NA	NA|262aa|up_7|NZ_CP023445.1_6853245_6854031_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|1192aa|up_6|NZ_CP023445.1_6854070_6857646_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|274aa|up_5|NZ_CP023445.1_6857695_6858517_-	pfam13490, zf-HC2, Putative zinc-finger	NA|163aa|up_4|NZ_CP023445.1_6858516_6859005_-	PRK09645, PRK09645, ECF RNA polymerase sigma factor SigL	NA|96aa|up_3|NZ_CP023445.1_6859038_6859326_-	PRK14422, PRK14422, acylphosphatase; Provisional	NA|236aa|up_2|NZ_CP023445.1_6859324_6860032_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|190aa|up_1|NZ_CP023445.1_6860046_6860616_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|164aa|up_0|NZ_CP023445.1_6860773_6861265_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|374aa|down_0|NZ_CP023445.1_6862029_6863151_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|227aa|down_1|NZ_CP023445.1_6863254_6863935_-	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional	NA|143aa|down_2|NZ_CP023445.1_6864254_6864683_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|292aa|down_3|NZ_CP023445.1_6865015_6865891_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|84aa|down_4|NZ_CP023445.1_6865900_6866152_-	NA	NA|259aa|down_5|NZ_CP023445.1_6866186_6866963_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|61aa|down_6|NZ_CP023445.1_6866990_6867173_-	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed	NA|196aa|down_7|NZ_CP023445.1_6867175_6867763_-	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]	NA|239aa|down_8|NZ_CP023445.1_6867881_6868598_-	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]	NA|161aa|down_9|NZ_CP023445.1_6868734_6869217_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	12	6921322-6921439	11	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	CGGCGCGACGGTGGGCGGGCCGTTTTTCC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|218aa|up_1|NZ_CP023445.1_6918626_6919280_+,NA	NA|291aa|up_9|NZ_CP023445.1_6909224_6910097_-	cd13836, IHF_B, Beta subunit of integration host factor (IHFB)	NA|201aa|up_8|NZ_CP023445.1_6910304_6910907_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|468aa|up_7|NZ_CP023445.1_6910921_6912325_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|221aa|up_6|NZ_CP023445.1_6912442_6913105_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|228aa|up_5|NZ_CP023445.1_6913920_6914604_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|497aa|up_4|NZ_CP023445.1_6914762_6916253_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|411aa|up_3|NZ_CP023445.1_6916341_6917574_+	PRK06185, PRK06185, FAD-dependent oxidoreductase	NA|257aa|up_2|NZ_CP023445.1_6917799_6918570_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|218aa|up_1|NZ_CP023445.1_6918626_6919280_+	NA	NA|538aa|up_0|NZ_CP023445.1_6919325_6920939_-	PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional	NA|346aa|down_0|NZ_CP023445.1_6921678_6922716_-	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional	NA|1093aa|down_1|NZ_CP023445.1_6922998_6926277_-	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins	NA|533aa|down_2|NZ_CP023445.1_6926713_6928312_-	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|90aa|down_3|NZ_CP023445.1_6928744_6929014_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|338aa|down_4|NZ_CP023445.1_6929126_6930140_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|169aa|down_5|NZ_CP023445.1_6930197_6930704_-	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|612aa|down_6|NZ_CP023445.1_6930752_6932588_-	PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated	NA|199aa|down_7|NZ_CP023445.1_6932879_6933476_+	pfam10756, bPH_6, Bacterial PH domain	NA|140aa|down_8|NZ_CP023445.1_6933611_6934031_+	cd12918, VKOR_arc, Vitamin K epoxide reductase family in archaea and some bacteria	NA|615aa|down_9|NZ_CP023445.1_6934147_6935992_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	13	6969378-6969625	12	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GATCGGCCGTCGAGCGATCGGCT	23	0	0	NA	NA	NA	5	5	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|79aa|up_8|NZ_CP023445.1_6959059_6959296_-,NA|94aa|down_4|NZ_CP023445.1_6975734_6976016_-	NA|118aa|up_9|NZ_CP023445.1_6958550_6958904_-	pfam12441, CopG_antitoxin, CopG antitoxin of type II toxin-antitoxin system	NA|79aa|up_8|NZ_CP023445.1_6959059_6959296_-	NA	NA|363aa|up_7|NZ_CP023445.1_6959370_6960459_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|392aa|up_6|NZ_CP023445.1_6960464_6961640_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|442aa|up_5|NZ_CP023445.1_6961639_6962965_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|331aa|up_4|NZ_CP023445.1_6963332_6964325_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|257aa|up_3|NZ_CP023445.1_6964324_6965095_-	COG3176, COG3176, Putative hemolysin [General function prediction only]	NA|320aa|up_2|NZ_CP023445.1_6965320_6966280_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_1|NZ_CP023445.1_6966300_6967080_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|281aa|up_0|NZ_CP023445.1_6967335_6968178_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|263aa|down_0|NZ_CP023445.1_6970787_6971576_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|249aa|down_1|NZ_CP023445.1_6971978_6972725_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|500aa|down_2|NZ_CP023445.1_6972721_6974221_+	COG1543, COG1543, Uncharacterized conserved protein [Function unknown]	NA|418aa|down_3|NZ_CP023445.1_6974447_6975701_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|94aa|down_4|NZ_CP023445.1_6975734_6976016_-	NA	NA|265aa|down_5|NZ_CP023445.1_6976012_6976807_-	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|143aa|down_6|NZ_CP023445.1_6977002_6977431_-	cd14505, CDKN3-like, cyclin-dependent kinase inhibitor 3 and similar proteins	NA|249aa|down_7|NZ_CP023445.1_6977466_6978213_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|311aa|down_8|NZ_CP023445.1_6978284_6979217_+	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases	NA|384aa|down_9|NZ_CP023445.1_6979258_6980410_-	pfam18096, Thump_like, THUMP domain-like
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	14	7196262-7196543	3	CRT	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	AGGNCTACCAGCAGCAGN	18	0	0	NA	NA	NA	5	5	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|259aa|up_6|NZ_CP023445.1_7187988_7188765_-,NA|141aa|up_0|NZ_CP023445.1_7194836_7195259_+,NA|61aa|down_3|NZ_CP023445.1_7207069_7207252_+,NA|246aa|down_7|NZ_CP023445.1_7210056_7210794_-,NA|198aa|down_9|NZ_CP023445.1_7213383_7213977_-	NA|344aa|up_9|NZ_CP023445.1_7184547_7185579_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|430aa|up_8|NZ_CP023445.1_7185575_7186865_-	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|333aa|up_7|NZ_CP023445.1_7186988_7187987_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|259aa|up_6|NZ_CP023445.1_7187988_7188765_-	NA	NA|140aa|up_5|NZ_CP023445.1_7189609_7190029_+	pfam00720, SSI, Subtilisin inhibitor-like	NA|164aa|up_4|NZ_CP023445.1_7190272_7190764_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|456aa|up_3|NZ_CP023445.1_7190872_7192240_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|128aa|up_2|NZ_CP023445.1_7192243_7192627_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|369aa|up_1|NZ_CP023445.1_7193038_7194145_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|141aa|up_0|NZ_CP023445.1_7194836_7195259_+	NA	NA|292aa|down_0|NZ_CP023445.1_7196685_7197561_+	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|1495aa|down_1|NZ_CP023445.1_7197569_7202054_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|1243aa|down_2|NZ_CP023445.1_7203334_7207063_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|61aa|down_3|NZ_CP023445.1_7207069_7207252_+	NA	NA|195aa|down_4|NZ_CP023445.1_7207342_7207927_-	pfam14016, DUF4232, Protein of unknown function (DUF4232)	NA|331aa|down_5|NZ_CP023445.1_7207977_7208970_-	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|346aa|down_6|NZ_CP023445.1_7209026_7210064_-	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|246aa|down_7|NZ_CP023445.1_7210056_7210794_-	NA	NA|789aa|down_8|NZ_CP023445.1_7211020_7213387_-	sd00006, TPR, Tetratricopeptide repeat	NA|198aa|down_9|NZ_CP023445.1_7213383_7213977_-	NA
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	15	7291985-7292092	13	CRISPRCasFinder	no	csa3	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Type I-A	ACCGCGCCGTCGCCGATCACCGCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA,NA|128aa|down_5|NZ_CP023445.1_7298511_7298895_+	NA|451aa|up_9|NZ_CP023445.1_7278920_7280273_-	PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed	NA|120aa|up_8|NZ_CP023445.1_7280351_7280711_-	pfam12005, DUF3499, Protein of unknown function (DUF3499)	NA|151aa|up_7|NZ_CP023445.1_7280856_7281309_+	cd12954, MMP_TTHA0227_like_1, Minimal MMP-like domain found in a group of hypothetical proteins from alphaproteobacteria and actinobacteria	NA|1331aa|up_6|NZ_CP023445.1_7282059_7286052_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|103aa|up_5|NZ_CP023445.1_7286267_7286576_-	pfam02467, Whib, Transcription factor WhiB	NA|250aa|up_4|NZ_CP023445.1_7286833_7287583_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|322aa|up_3|NZ_CP023445.1_7287607_7288573_+	PRK13606, PRK13606, LPPG:FO 2-phospho-L-lactate transferase; Provisional	NA|447aa|up_2|NZ_CP023445.1_7288595_7289936_+	PRK13294, PRK13294, F420-0--gamma-glutamyl ligase; Provisional	NA|182aa|up_1|NZ_CP023445.1_7289938_7290484_+	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|315aa|up_0|NZ_CP023445.1_7290941_7291886_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|130aa|down_0|NZ_CP023445.1_7293122_7293512_+	PHA03373, PHA03373, tegument protein; Provisional	NA|286aa|down_1|NZ_CP023445.1_7293687_7294545_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|378aa|down_2|NZ_CP023445.1_7295075_7296209_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|355aa|down_3|NZ_CP023445.1_7296382_7297447_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|301aa|down_4|NZ_CP023445.1_7297592_7298495_+	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|128aa|down_5|NZ_CP023445.1_7298511_7298895_+	NA	NA|823aa|down_6|NZ_CP023445.1_7299023_7301492_+	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|365aa|down_7|NZ_CP023445.1_7301484_7302579_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|297aa|down_8|NZ_CP023445.1_7302972_7303863_-	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|331aa|down_9|NZ_CP023445.1_7303862_7304855_-	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	16	7637194-7637891	14,4,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GGAACACCCCCGCGTGCGCGGGGAAGAC,GGAACACCCCCGCGTGCGCGGGGAAGACN,GTCTTCCCCGCGCACGCGGGGGTGTTCC	28,29,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	11,11,8	11	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|133aa|up_7|NZ_CP023445.1_7628990_7629389_+,NA|292aa|up_2|NZ_CP023445.1_7633989_7634865_+,NA|174aa|up_1|NZ_CP023445.1_7635007_7635529_-,NA|90aa|up_0|NZ_CP023445.1_7635800_7636070_+,NA|467aa|down_1|NZ_CP023445.1_7638957_7640358_-,NA|87aa|down_3|NZ_CP023445.1_7640984_7641245_+,NA|185aa|down_5|NZ_CP023445.1_7641543_7642098_+,NA|60aa|down_6|NZ_CP023445.1_7642528_7642708_+,NA|112aa|down_7|NZ_CP023445.1_7642806_7643142_+,NA|89aa|down_8|NZ_CP023445.1_7643141_7643408_+	NA|414aa|up_9|NZ_CP023445.1_7626784_7628026_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|204aa|up_8|NZ_CP023445.1_7628266_7628878_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|133aa|up_7|NZ_CP023445.1_7628990_7629389_+	NA	NA|140aa|up_6|NZ_CP023445.1_7629453_7629873_-	cd03453, SAV4209_like, SAV4209_like	NA|149aa|up_5|NZ_CP023445.1_7629869_7630316_-	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|55aa|up_4|NZ_CP023445.1_7630389_7630554_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|872aa|up_3|NZ_CP023445.1_7631133_7633749_-	cd01948, EAL, EAL domain	NA|292aa|up_2|NZ_CP023445.1_7633989_7634865_+	NA	NA|174aa|up_1|NZ_CP023445.1_7635007_7635529_-	NA	NA|90aa|up_0|NZ_CP023445.1_7635800_7636070_+	NA	NA|325aa|down_0|NZ_CP023445.1_7638023_7638998_+	pfam01636, APH, Phosphotransferase enzyme family	NA|467aa|down_1|NZ_CP023445.1_7638957_7640358_-	NA	NA|129aa|down_2|NZ_CP023445.1_7640497_7640884_-	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators	NA|87aa|down_3|NZ_CP023445.1_7640984_7641245_+	NA	NA|85aa|down_4|NZ_CP023445.1_7641289_7641544_+	pfam02467, Whib, Transcription factor WhiB	NA|185aa|down_5|NZ_CP023445.1_7641543_7642098_+	NA	NA|60aa|down_6|NZ_CP023445.1_7642528_7642708_+	NA	NA|112aa|down_7|NZ_CP023445.1_7642806_7643142_+	NA	NA|89aa|down_8|NZ_CP023445.1_7643141_7643408_+	NA	NA|452aa|down_9|NZ_CP023445.1_7643407_7644763_+	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)
GCF_002354875.1_ASM235487v1	NZ_CP023445	Actinosynnema pretiosum strain X47 chromosome, complete genome	17	7961288-7961390	15	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	Orphan	GGTCAGGCCTGCGAGGCGGTCAG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e,RT	NA|185aa|up_8|NZ_CP023445.1_7951754_7952309_+,NA|135aa|up_7|NZ_CP023445.1_7952341_7952746_-,NA|306aa|up_6|NZ_CP023445.1_7952742_7953660_-,NA|118aa|up_5|NZ_CP023445.1_7953656_7954010_-,NA|235aa|up_3|NZ_CP023445.1_7954988_7955693_-,NA|192aa|down_5|NZ_CP023445.1_7966795_7967371_-	NA|185aa|up_9|NZ_CP023445.1_7951133_7951688_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|185aa|up_8|NZ_CP023445.1_7951754_7952309_+	NA	NA|135aa|up_7|NZ_CP023445.1_7952341_7952746_-	NA	NA|306aa|up_6|NZ_CP023445.1_7952742_7953660_-	NA	NA|118aa|up_5|NZ_CP023445.1_7953656_7954010_-	NA	NA|260aa|up_4|NZ_CP023445.1_7954212_7954992_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|235aa|up_3|NZ_CP023445.1_7954988_7955693_-	NA	NA|861aa|up_2|NZ_CP023445.1_7955821_7958404_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|128aa|up_1|NZ_CP023445.1_7958916_7959300_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|368aa|up_0|NZ_CP023445.1_7959766_7960870_+	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant	NA|144aa|down_0|NZ_CP023445.1_7961482_7961914_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|397aa|down_1|NZ_CP023445.1_7961910_7963101_-	PRK14279, PRK14279, molecular chaperone DnaJ	NA|219aa|down_2|NZ_CP023445.1_7963121_7963778_-	PRK14164, PRK14164, heat shock protein GrpE; Provisional	NA|619aa|down_3|NZ_CP023445.1_7963774_7965631_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|269aa|down_4|NZ_CP023445.1_7965844_7966651_-	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|192aa|down_5|NZ_CP023445.1_7966795_7967371_-	NA	NA|110aa|down_6|NZ_CP023445.1_7967532_7967862_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|759aa|down_7|NZ_CP023445.1_7968019_7970296_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|127aa|down_8|NZ_CP023445.1_7970371_7970752_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|398aa|down_9|NZ_CP023445.1_7970786_7971980_-	pfam17210, SdrD_B, SdrD B-like domain
