assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	1	414962-415062	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|70aa|up_8|NZ_AP017377.1_406534_406744_-,NA|128aa|up_6|NZ_AP017377.1_407568_407952_-,NA|34aa|up_0|NZ_AP017377.1_414186_414288_+,NA|221aa|down_1|NZ_AP017377.1_416152_416815_-,NA|179aa|down_7|NZ_AP017377.1_422906_423443_-	NA|84aa|up_9|NZ_AP017377.1_406244_406496_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_AP017377.1_406534_406744_-	NA	NA|194aa|up_7|NZ_AP017377.1_406921_407503_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_AP017377.1_407568_407952_-	NA	NA|209aa|up_5|NZ_AP017377.1_408206_408833_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_AP017377.1_409277_410801_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_AP017377.1_410816_411386_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_AP017377.1_411877_412633_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_AP017377.1_412713_414102_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_AP017377.1_414186_414288_+	NA	NA|319aa|down_0|NZ_AP017377.1_415078_416035_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_AP017377.1_416152_416815_-	NA	NA|136aa|down_2|NZ_AP017377.1_416957_417365_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_AP017377.1_417877_418456_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_AP017377.1_418455_419724_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_AP017377.1_419761_421228_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_AP017377.1_421252_422794_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_AP017377.1_422906_423443_-	NA	NA|235aa|down_8|NZ_AP017377.1_423835_424540_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_AP017377.1_424938_425211_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	2	661961-662053	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|36aa|up_3|NZ_AP017377.1_658444_658552_+,NA|169aa|down_4|NZ_AP017377.1_665800_666307_+,NA|239aa|down_5|NZ_AP017377.1_666468_667185_+	NA|313aa|up_9|NZ_AP017377.1_652658_653597_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_AP017377.1_653807_654344_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_AP017377.1_654512_654989_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_AP017377.1_655028_656324_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_AP017377.1_656351_656873_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_AP017377.1_657359_658370_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_AP017377.1_658444_658552_+	NA	NA|139aa|up_2|NZ_AP017377.1_658644_659061_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_AP017377.1_659057_660719_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_AP017377.1_661107_661743_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_AP017377.1_662121_663009_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_AP017377.1_663156_664107_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_AP017377.1_664161_664881_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_AP017377.1_664864_665665_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_AP017377.1_665800_666307_+	NA	NA|239aa|down_5|NZ_AP017377.1_666468_667185_+	NA	NA|263aa|down_6|NZ_AP017377.1_667353_668142_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_AP017377.1_668392_668767_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_AP017377.1_669714_670644_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_AP017377.1_670838_671063_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	3	779309-779391	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|69aa|up_9|NZ_AP017377.1_765909_766116_+,NA|34aa|down_1|NZ_AP017377.1_780847_780949_+,NA|52aa|down_8|NZ_AP017377.1_789128_789284_+	NA|69aa|up_9|NZ_AP017377.1_765909_766116_+	NA	NA|237aa|up_8|NZ_AP017377.1_766203_766914_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_AP017377.1_766897_767902_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_AP017377.1_768375_770316_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_AP017377.1_770586_772470_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_AP017377.1_772481_774263_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_AP017377.1_774484_775462_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_AP017377.1_775454_776969_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_AP017377.1_777208_778267_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_AP017377.1_778617_779160_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_AP017377.1_779839_780757_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_AP017377.1_780847_780949_+	NA	NA|502aa|down_2|NZ_AP017377.1_781026_782532_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_AP017377.1_782872_783373_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_AP017377.1_783392_784259_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_AP017377.1_785059_785458_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_AP017377.1_785420_787526_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_AP017377.1_787643_788615_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_AP017377.1_789128_789284_+	NA	NA|324aa|down_9|NZ_AP017377.1_789322_790294_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	4	869198-869279	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	869222-869255|869222-869255	NZ_AP017377.1_1382278-1382245|NZ_AP017377.1_1472764-1472797	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|194aa|up_9|NZ_AP017377.1_862301_862883_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_AP017377.1_862955_863573_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_AP017377.1_863727_864222_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_AP017377.1_864620_865043_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_AP017377.1_865190_865907_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_AP017377.1_865989_866529_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_AP017377.1_866678_866999_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_AP017377.1_867142_867499_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_AP017377.1_867656_868037_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_AP017377.1_868215_869094_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_AP017377.1_869835_870222_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_AP017377.1_870214_870511_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_AP017377.1_870760_871786_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_AP017377.1_871778_872474_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_AP017377.1_872491_873313_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_AP017377.1_873666_873861_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_AP017377.1_874093_874945_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_AP017377.1_875272_876034_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_AP017377.1_876131_877439_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_AP017377.1_877544_878795_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	5	975898-976107	1	CRT	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTGTGTTGGGGCCCTTACCCCAACTTGCACATTATTNNN	40	3	31	975935-975956|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|975994-976011|976049-976070	NZ_AP017377.1_976108-976129|NZ_AP017377.1_151427-151410|NZ_AP017377.1_294623-294606|NZ_AP017377.1_376498-376481|NZ_AP017377.1_820401-820418|NZ_AP017377.1_820456-820473|NZ_AP017377.1_820511-820528|NZ_AP017377.1_820566-820583|NZ_AP017377.1_826059-826076|NZ_AP017377.1_826117-826134|NZ_AP017377.1_869278-869295|NZ_AP017377.1_976167-976184|NZ_AP017377.1_1154726-1154709|NZ_AP017377.1_1382163-1382146|NZ_AP017377.1_1472879-1472896|NZ_AP017377.1_1804537-1804520|NZ_AP017377.1_1932430-1932413|NZ_AP017377.1_2055378-2055395|NZ_AP017377.1_2604633-2604616|NZ_AP017377.1_2854674-2854691|NZ_AP017377.1_294678-294661|NZ_AP017377.1_833326-833343|NZ_AP017377.1_1120760-1120743|NZ_AP017377.1_1423568-1423551|NZ_AP017377.1_1468474-1468457|NZ_AP017377.1_2064727-2064744|NZ_AP017377.1_328632-328615|NZ_AP017377.1_793398-793381|NZ_AP017377.1_936761-936778|NZ_AP017377.1_1045829-1045812|NZ_AP017377.1_976108-976129	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|188aa|up_9|NZ_AP017377.1_958281_958845_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|up_8|NZ_AP017377.1_958841_959795_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|394aa|up_7|NZ_AP017377.1_959904_961086_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|806aa|up_6|NZ_AP017377.1_961373_963791_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|up_5|NZ_AP017377.1_963812_964124_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|2187aa|up_4|NZ_AP017377.1_964449_971010_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|423aa|up_3|NZ_AP017377.1_971126_972395_-	pfam03486, HI0933_like, HI0933-like protein	NA|554aa|up_2|NZ_AP017377.1_972801_974463_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|232aa|up_1|NZ_AP017377.1_974459_975155_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|141aa|up_0|NZ_AP017377.1_975171_975594_+	pfam12732, YtxH, YtxH-like protein	NA|470aa|down_0|NZ_AP017377.1_976457_977867_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|283aa|down_1|NZ_AP017377.1_977870_978719_+	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|264aa|down_2|NZ_AP017377.1_979268_980060_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|215aa|down_3|NZ_AP017377.1_980074_980719_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|281aa|down_4|NZ_AP017377.1_981188_982031_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|104aa|down_5|NZ_AP017377.1_982155_982467_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|down_6|NZ_AP017377.1_982553_983630_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|down_7|NZ_AP017377.1_983694_984006_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|286aa|down_8|NZ_AP017377.1_984105_984963_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|199aa|down_9|NZ_AP017377.1_984991_985588_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	6	1684299-1684485	2	CRT	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCC	19	3	33	1684318-1684354|1684318-1684354|1684318-1684354|1684318-1684354|1684318-1684354|1684318-1684354|1684318-1684354|1684318-1684354|1684318-1684354|1684318-1684354|1684318-1684354|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684374-1684410|1684430-1684466|1684430-1684466|1684430-1684466|1684430-1684466|1684430-1684466|1684430-1684466|1684430-1684466|1684430-1684466|1684430-1684466|1684430-1684466	NZ_AP017377.1_151503-151467|NZ_AP017377.1_661035-660999|NZ_AP017377.1_778327-778363|NZ_AP017377.1_779333-779297|NZ_AP017377.1_825982-826018|NZ_AP017377.1_1382298-1382262|NZ_AP017377.1_1472744-1472780|NZ_AP017377.1_2055418-2055454|NZ_AP017377.1_1804614-1804578|NZ_AP017377.1_2579333-2579369|NZ_AP017377.1_1688286-1688322|NZ_AP017377.1_376403-376367|NZ_AP017377.1_1472802-1472838|NZ_AP017377.1_1830747-1830711|NZ_AP017377.1_2053961-2053997|NZ_AP017377.1_1154687-1154651|NZ_AP017377.1_1382240-1382204|NZ_AP017377.1_2687933-2687969|NZ_AP017377.1_825926-825962|NZ_AP017377.1_1684262-1684298|NZ_AP017377.1_1688342-1688378|NZ_AP017377.1_2053902-2053938|NZ_AP017377.1_2854600-2854636|NZ_AP017377.1_976148-976184|NZ_AP017377.1_820382-820418|NZ_AP017377.1_820437-820473|NZ_AP017377.1_820492-820528|NZ_AP017377.1_820547-820583|NZ_AP017377.1_869259-869295|NZ_AP017377.1_1154745-1154709|NZ_AP017377.1_2064708-2064744|NZ_AP017377.1_2604652-2604616|NZ_AP017377.1_2854655-2854691	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|76aa|up_6|NZ_AP017377.1_1677057_1677285_-,NA|75aa|down_0|NZ_AP017377.1_1684640_1684865_-,NA|49aa|down_1|NZ_AP017377.1_1684821_1684968_-,NA|78aa|down_3|NZ_AP017377.1_1687076_1687310_+,NA|62aa|down_4|NZ_AP017377.1_1687931_1688117_+,NA|169aa|down_8|NZ_AP017377.1_1691361_1691868_-	NA|45aa|up_9|NZ_AP017377.1_1674322_1674457_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_AP017377.1_1675368_1675557_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_AP017377.1_1675805_1676753_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_AP017377.1_1677057_1677285_-	NA	NA|519aa|up_5|NZ_AP017377.1_1677592_1679149_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_AP017377.1_1679320_1680253_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_AP017377.1_1680275_1681277_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_AP017377.1_1681714_1682440_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_AP017377.1_1682534_1683260_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_AP017377.1_1683367_1684084_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_AP017377.1_1684640_1684865_-	NA	NA|49aa|down_1|NZ_AP017377.1_1684821_1684968_-	NA	NA|320aa|down_2|NZ_AP017377.1_1685640_1686600_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_AP017377.1_1687076_1687310_+	NA	NA|62aa|down_4|NZ_AP017377.1_1687931_1688117_+	NA	NA|117aa|down_5|NZ_AP017377.1_1688769_1689120_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_AP017377.1_1689273_1689771_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|391aa|down_7|NZ_AP017377.1_1689955_1691128_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|169aa|down_8|NZ_AP017377.1_1691361_1691868_-	NA	NA|134aa|down_9|NZ_AP017377.1_1692539_1692941_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	7	1951914-1951999	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCAACTTGCACACTATTGTAAGCTGACTTT	30	1	2	1951944-1951969|1951944-1951969	NZ_AP017377.1_2053989-2054014|NZ_AP017377.1_376375-376350	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA|45aa|down_7|NZ_AP017377.1_1961653_1961788_-	NA|301aa|up_9|NZ_AP017377.1_1935955_1936858_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_AP017377.1_1937023_1940677_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_AP017377.1_1940677_1944154_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_AP017377.1_1944313_1944889_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_AP017377.1_1944904_1945429_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_AP017377.1_1945433_1946009_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_AP017377.1_1946333_1947665_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_AP017377.1_1948015_1949221_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_AP017377.1_1949210_1950590_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_AP017377.1_1950831_1951761_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_AP017377.1_1952149_1953394_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_AP017377.1_1953502_1954693_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_AP017377.1_1955000_1956128_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_AP017377.1_1956489_1956867_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|391aa|down_4|NZ_AP017377.1_1957235_1958408_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|400aa|down_5|NZ_AP017377.1_1958741_1959941_-	cd17262, RMtype1_S_Aco12261I-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Aminobacterium colombiense DSM 12261 S subunit (S	NA|519aa|down_6|NZ_AP017377.1_1959933_1961490_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|45aa|down_7|NZ_AP017377.1_1961653_1961788_-	NA	NA|240aa|down_8|NZ_AP017377.1_1961852_1962572_-	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|239aa|down_9|NZ_AP017377.1_1962722_1963439_-	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	8	2288850-2289000	6	CRISPRCasFinder	no	csa3	cas3,csa3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|77aa|up_5|NZ_AP017377.1_2283721_2283952_-,NA|364aa|up_0|NZ_AP017377.1_2287740_2288832_+,NA|35aa|down_0|NZ_AP017377.1_2289331_2289436_-,NA|31aa|down_2|NZ_AP017377.1_2291547_2291640_+	NA|237aa|up_9|NZ_AP017377.1_2279331_2280042_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_AP017377.1_2280162_2280606_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_AP017377.1_2280805_2281219_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_AP017377.1_2281676_2283050_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_AP017377.1_2283721_2283952_-	NA	NA|313aa|up_4|NZ_AP017377.1_2283982_2284921_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_AP017377.1_2285355_2286021_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_AP017377.1_2286172_2286493_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_AP017377.1_2286494_2287475_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_AP017377.1_2287740_2288832_+	NA	NA|35aa|down_0|NZ_AP017377.1_2289331_2289436_-	NA	NA|379aa|down_1|NZ_AP017377.1_2290122_2291259_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_AP017377.1_2291547_2291640_+	NA	NA|286aa|down_3|NZ_AP017377.1_2292344_2293202_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_AP017377.1_2293269_2294052_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_AP017377.1_2294283_2296089_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_AP017377.1_2296769_2298308_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_AP017377.1_2298342_2300475_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_AP017377.1_2300486_2300921_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_AP017377.1_2300920_2302027_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002355355.1_ASM235535v1	NZ_AP017377	Staphylococcus aureus strain OC8	9	2413012-2413205	3	CRT	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	11	2413035-2413067|2413035-2413067|2413035-2413067|2413035-2413067|2413091-2413126|2413091-2413126|2413091-2413126|2413150-2413182|2413150-2413182|2413150-2413182|2413150-2413182	NZ_AP017377.1_1382232-1382200|NZ_AP017377.1_1472810-1472842|NZ_AP017377.1_2053969-2054001|NZ_AP017377.1_2687941-2687973|NZ_AP017377.1_976153-976188|NZ_AP017377.1_1154740-1154705|NZ_AP017377.1_2064713-2064748|NZ_AP017377.1_825934-825966|NZ_AP017377.1_1472810-1472842|NZ_AP017377.1_2053969-2054001|NZ_AP017377.1_2687941-2687973	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_AP017377.1_2403539_2403704_+,NA|106aa|up_8|NZ_AP017377.1_2403948_2404266_+,NA|84aa|up_5|NZ_AP017377.1_2409390_2409642_+,NA|57aa|up_0|NZ_AP017377.1_2412781_2412952_+,NA	NA|55aa|up_9|NZ_AP017377.1_2403539_2403704_+	NA	NA|106aa|up_8|NZ_AP017377.1_2403948_2404266_+	NA	NA|1056aa|up_7|NZ_AP017377.1_2404452_2407620_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_AP017377.1_2407736_2409002_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_AP017377.1_2409390_2409642_+	NA	NA|255aa|up_4|NZ_AP017377.1_2409633_2410398_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_AP017377.1_2410559_2411000_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_AP017377.1_2410992_2412204_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_AP017377.1_2412305_2412656_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_AP017377.1_2412781_2412952_+	NA	NA|341aa|down_0|NZ_AP017377.1_2413346_2414369_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_AP017377.1_2414388_2414988_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_AP017377.1_2414994_2415228_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_AP017377.1_2415233_2415680_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_AP017377.1_2415693_2416179_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_AP017377.1_2416175_2417435_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_AP017377.1_2417497_2417992_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_AP017377.1_2417993_2418500_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_AP017377.1_2418530_2419535_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_AP017377.1_2419704_2420310_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
