assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	1	333955-334674	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	CCGCCGGCGCCGCCGGNG	18	0	0	NA	NA	NA	14	14	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|61aa|up_0|NZ_AP017901.1_333394_333577_-,NA	NA|398aa|up_9|NZ_AP017901.1_323572_324766_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_AP017901.1_324801_326484_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_AP017901.1_326500_328696_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_AP017901.1_328809_329943_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_AP017901.1_329939_330560_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_AP017901.1_330656_331238_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_AP017901.1_331167_331893_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_AP017901.1_331982_332903_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_AP017901.1_332942_333371_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_AP017901.1_333394_333577_-	NA	NA|913aa|down_0|NZ_AP017901.1_336730_339469_-	pfam00934, PE, PE family	NA|838aa|down_1|NZ_AP017901.1_339718_342232_-	pfam00934, PE, PE family	NA|537aa|down_2|NZ_AP017901.1_342522_344133_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NZ_AP017901.1_344156_345065_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NZ_AP017901.1_345288_347184_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NZ_AP017901.1_347180_348797_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NZ_AP017901.1_348793_352786_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NZ_AP017901.1_352782_353091_+	pfam00934, PE, PE family	NA|514aa|down_8|NZ_AP017901.1_353093_354635_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NZ_AP017901.1_354683_354977_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	2	335059-335170	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	CCGCCGTTGCCGCCGTTGCCGATCA	25	1	6	335129-335145|335129-335145|335129-335145|335129-335145|335129-335145|335129-335145	NZ_AP017901.1_838607-838591|NZ_AP017901.1_1185378-1185394|NZ_AP017901.1_1209301-1209285|NZ_AP017901.1_2412732-2412748|NZ_AP017901.1_2791120-2791136|NZ_AP017901.1_4005696-4005712	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|61aa|up_0|NZ_AP017901.1_333394_333577_-,NA	NA|398aa|up_9|NZ_AP017901.1_323572_324766_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_AP017901.1_324801_326484_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_AP017901.1_326500_328696_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_AP017901.1_328809_329943_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_AP017901.1_329939_330560_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_AP017901.1_330656_331238_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_AP017901.1_331167_331893_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_AP017901.1_331982_332903_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_AP017901.1_332942_333371_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_AP017901.1_333394_333577_-	NA	NA|913aa|down_0|NZ_AP017901.1_336730_339469_-	pfam00934, PE, PE family	NA|838aa|down_1|NZ_AP017901.1_339718_342232_-	pfam00934, PE, PE family	NA|537aa|down_2|NZ_AP017901.1_342522_344133_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NZ_AP017901.1_344156_345065_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NZ_AP017901.1_345288_347184_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NZ_AP017901.1_347180_348797_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NZ_AP017901.1_348793_352786_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NZ_AP017901.1_352782_353091_+	pfam00934, PE, PE family	NA|514aa|down_8|NZ_AP017901.1_353093_354635_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NZ_AP017901.1_354683_354977_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	3	369622-370320	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	369910-369951|369985-370017	NZ_AP017901.1_377941-377982|NZ_AP017901.1_376756-376788	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|101aa|up_4|NZ_AP017901.1_366634_366937_+,NA|161aa|down_1|NZ_AP017901.1_379730_380213_-,NA|410aa|down_5|NZ_AP017901.1_382329_383559_+	NA|262aa|up_9|NZ_AP017901.1_361329_362115_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_AP017901.1_362103_362907_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_AP017901.1_362916_364314_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_AP017901.1_364492_366268_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_AP017901.1_366410_366638_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_AP017901.1_366634_366937_+	NA	NA|74aa|up_3|NZ_AP017901.1_366984_367206_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_AP017901.1_367202_367628_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_AP017901.1_367763_368396_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_AP017901.1_368392_369301_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_AP017901.1_379071_379743_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_AP017901.1_379730_380213_-	NA	NA|239aa|down_2|NZ_AP017901.1_380270_380987_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_AP017901.1_381088_381745_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_AP017901.1_381814_382306_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_AP017901.1_382329_383559_+	NA	NA|621aa|down_6|NZ_AP017901.1_383713_385576_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_AP017901.1_385647_386034_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NZ_AP017901.1_386036_386672_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_AP017901.1_386759_387644_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	4	689450-689526	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA,NA	NA|136aa|up_9|NZ_AP017901.1_675345_675753_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_AP017901.1_675812_676499_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_AP017901.1_676652_679286_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_AP017901.1_679308_681696_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_AP017901.1_681833_682556_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_AP017901.1_682552_683350_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_AP017901.1_683351_684239_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_AP017901.1_684244_685459_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_AP017901.1_686482_687928_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_AP017901.1_687924_689361_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_AP017901.1_690661_692212_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_AP017901.1_692263_692656_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_AP017901.1_692652_692910_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_AP017901.1_693092_694328_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_AP017901.1_694578_694992_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_AP017901.1_694988_695225_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_AP017901.1_695328_695835_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_AP017901.1_695948_696419_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_AP017901.1_696462_697224_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_AP017901.1_697280_697592_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	5	1187104-1187212	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA,NA	NA|544aa|up_9|NZ_AP017901.1_1176471_1178103_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_AP017901.1_1178178_1179243_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_AP017901.1_1179295_1179769_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_AP017901.1_1179802_1180666_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_AP017901.1_1180670_1181528_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_AP017901.1_1181528_1182611_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_AP017901.1_1182691_1183111_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_AP017901.1_1183222_1183789_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_AP017901.1_1183785_1184181_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_AP017901.1_1184208_1186212_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_AP017901.1_1188297_1190061_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_AP017901.1_1190057_1190831_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_AP017901.1_1190842_1191880_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_AP017901.1_1192066_1192903_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_AP017901.1_1193018_1193870_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_AP017901.1_1193943_1195161_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_AP017901.1_1195213_1196158_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NZ_AP017901.1_1196554_1197448_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_AP017901.1_1197504_1198899_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_AP017901.1_1199100_1199823_+	pfam06271, RDD, RDD family
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	6	1207738-1208594	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	83	1208121-1208142|1208166-1208181|1208304-1208325|1208304-1208325|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439|1208421-1208439	NZ_AP017901.1_2946488-2946467|NZ_AP017901.1_2076525-2076510|NZ_AP017901.1_835391-835412|NZ_AP017901.1_1213477-1213498|NZ_AP017901.1_672216-672198|NZ_AP017901.1_1209264-1209282|NZ_AP017901.1_1213450-1213468|NZ_AP017901.1_1213522-1213540|NZ_AP017901.1_1627716-1627698|NZ_AP017901.1_1630569-1630551|NZ_AP017901.1_1979183-1979165|NZ_AP017901.1_2049509-2049491|NZ_AP017901.1_2049956-2049938|NZ_AP017901.1_2050055-2050037|NZ_AP017901.1_2788037-2788019|NZ_AP017901.1_2791565-2791547|NZ_AP017901.1_150218-150236|NZ_AP017901.1_335241-335223|NZ_AP017901.1_338378-338360|NZ_AP017901.1_338831-338813|NZ_AP017901.1_338882-338864|NZ_AP017901.1_338891-338873|NZ_AP017901.1_341162-341144|NZ_AP017901.1_341291-341273|NZ_AP017901.1_341558-341540|NZ_AP017901.1_341587-341605|NZ_AP017901.1_341681-341663|NZ_AP017901.1_366212-366194|NZ_AP017901.1_446562-446544|NZ_AP017901.1_551252-551234|NZ_AP017901.1_629826-629844|NZ_AP017901.1_630048-630066|NZ_AP017901.1_671382-671364|NZ_AP017901.1_838174-838192|NZ_AP017901.1_922494-922512|NZ_AP017901.1_922536-922554|NZ_AP017901.1_1086759-1086777|NZ_AP017901.1_1087407-1087425|NZ_AP017901.1_1091477-1091459|NZ_AP017901.1_1208793-1208811|NZ_AP017901.1_1209183-1209201|NZ_AP017901.1_1209471-1209489|NZ_AP017901.1_1209489-1209507|NZ_AP017901.1_1213687-1213705|NZ_AP017901.1_1487629-1487611|NZ_AP017901.1_1616133-1616115|NZ_AP017901.1_1633280-1633262|NZ_AP017901.1_1633289-1633271|NZ_AP017901.1_1852368-1852350|NZ_AP017901.1_1852896-1852878|NZ_AP017901.1_1978457-1978439|NZ_AP017901.1_1989421-1989439|NZ_AP017901.1_2076723-2076705|NZ_AP017901.1_2294186-2294168|NZ_AP017901.1_2347638-2347620|NZ_AP017901.1_2408871-2408889|NZ_AP017901.1_2412958-2412940|NZ_AP017901.1_2555676-2555658|NZ_AP017901.1_2680765-2680783|NZ_AP017901.1_2781352-2781334|NZ_AP017901.1_2781934-2781916|NZ_AP017901.1_3040734-3040752|NZ_AP017901.1_3040833-3040851|NZ_AP017901.1_3690937-3690955|NZ_AP017901.1_3731486-3731468|NZ_AP017901.1_3732110-3732092|NZ_AP017901.1_3732353-3732335|NZ_AP017901.1_3732486-3732468|NZ_AP017901.1_3768707-3768725|NZ_AP017901.1_3768890-3768908|NZ_AP017901.1_3769058-3769076|NZ_AP017901.1_3895913-3895931|NZ_AP017901.1_3895922-3895940|NZ_AP017901.1_3897743-3897761|NZ_AP017901.1_3897782-3897800|NZ_AP017901.1_3898145-3898163|NZ_AP017901.1_3899875-3899893|NZ_AP017901.1_3909771-3909789|NZ_AP017901.1_3917405-3917423|NZ_AP017901.1_3917546-3917564|NZ_AP017901.1_3918146-3918164|NZ_AP017901.1_4000469-4000451|NZ_AP017901.1_4063213-4063231	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|89aa|up_3|NZ_AP017901.1_1203170_1203437_+,NA|61aa|down_3|NZ_AP017901.1_1211057_1211240_+,NA|35aa|down_4|NZ_AP017901.1_1211349_1211454_+	NA|465aa|up_9|NZ_AP017901.1_1197504_1198899_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_AP017901.1_1199100_1199823_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_AP017901.1_1199854_1201021_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_AP017901.1_1201091_1201586_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_AP017901.1_1201771_1202206_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_AP017901.1_1202307_1203174_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_AP017901.1_1203170_1203437_+	NA	NA|674aa|up_2|NZ_AP017901.1_1203423_1205445_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_AP017901.1_1205543_1206272_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_AP017901.1_1206382_1207171_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_AP017901.1_1209872_1210193_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_AP017901.1_1210345_1210780_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_AP017901.1_1210878_1211046_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_AP017901.1_1211057_1211240_+	NA	NA|35aa|down_4|NZ_AP017901.1_1211349_1211454_+	NA	NA|152aa|down_5|NZ_AP017901.1_1211431_1211887_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|793aa|down_6|NZ_AP017901.1_1212301_1214680_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_AP017901.1_1214897_1215836_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_AP017901.1_1216223_1217504_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_AP017901.1_1217608_1218436_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	7	1569238-1570310	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|191aa|up_7|NZ_AP017901.1_1560746_1561319_+,NA	NA|103aa|up_9|NZ_AP017901.1_1558516_1558825_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_AP017901.1_1558821_1560441_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|191aa|up_7|NZ_AP017901.1_1560746_1561319_+	NA	NA|209aa|up_6|NZ_AP017901.1_1561453_1562080_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_AP017901.1_1562145_1562478_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_AP017901.1_1562493_1563750_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_AP017901.1_1563877_1565089_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_AP017901.1_1565161_1566640_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_AP017901.1_1566636_1568022_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_AP017901.1_1568099_1569134_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_AP017901.1_1571164_1571566_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_AP017901.1_1571562_1571820_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_AP017901.1_1571902_1572862_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_AP017901.1_1572886_1573849_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_AP017901.1_1573982_1574585_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_AP017901.1_1574665_1576633_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_AP017901.1_1576650_1577475_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_AP017901.1_1577643_1578126_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_AP017901.1_1578197_1579022_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_AP017901.1_1579218_1580157_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	8	2076195-2076449	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2076276-2076293|2076276-2076293|2076366-2076383	NZ_AP017901.1_404237-404220|NZ_AP017901.1_611839-611822|NZ_AP017901.1_3437046-3437029	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|88aa|up_0|NZ_AP017901.1_2075554_2075818_-,NA	NA|165aa|up_9|NZ_AP017901.1_2061904_2062399_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_AP017901.1_2062746_2063424_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_AP017901.1_2063782_2066608_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_AP017901.1_2066834_2067695_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_AP017901.1_2067735_2068602_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_AP017901.1_2068606_2070493_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_AP017901.1_2070508_2072542_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_AP017901.1_2072661_2074887_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_AP017901.1_2075162_2075558_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_AP017901.1_2075554_2075818_-	NA	NA|346aa|down_0|NZ_AP017901.1_2077586_2078624_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_AP017901.1_2078623_2079991_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_AP017901.1_2080164_2081604_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_AP017901.1_2081636_2083088_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_AP017901.1_2083117_2084068_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_AP017901.1_2084082_2084499_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_AP017901.1_2084776_2085199_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_AP017901.1_2085247_2085550_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_AP017901.1_2085546_2085861_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_AP017901.1_2085860_2087594_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	9	2156780-2156999	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|136aa|up_3|NZ_AP017901.1_2147892_2148300_-,NA|127aa|down_5|NZ_AP017901.1_2164515_2164896_-	NA|741aa|up_9|NZ_AP017901.1_2141860_2144083_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_AP017901.1_2144120_2144564_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_AP017901.1_2144677_2145271_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_AP017901.1_2145353_2145959_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_AP017901.1_2146058_2147063_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_AP017901.1_2147162_2147915_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_AP017901.1_2147892_2148300_-	NA	NA|368aa|up_2|NZ_AP017901.1_2148434_2149538_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_AP017901.1_2149537_2150734_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1458aa|up_0|NZ_AP017901.1_2150903_2155277_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_AP017901.1_2159026_2159491_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_AP017901.1_2159588_2160452_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_AP017901.1_2160489_2161761_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_AP017901.1_2162032_2163148_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_AP017901.1_2163138_2164479_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_AP017901.1_2164515_2164896_-	NA	NA|621aa|down_6|NZ_AP017901.1_2165052_2166915_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_AP017901.1_2166922_2167402_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_AP017901.1_2167638_2168412_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_AP017901.1_2168415_2169183_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	10	3105326-3106680	2,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|85aa|up_8|NZ_AP017901.1_3098605_3098860_-,NA|135aa|up_7|NZ_AP017901.1_3099007_3099412_+,NA|64aa|up_6|NZ_AP017901.1_3099408_3099600_+,NA|86aa|up_4|NZ_AP017901.1_3101186_3101444_+,NA|104aa|up_3|NZ_AP017901.1_3101548_3101860_+,NA|203aa|up_2|NZ_AP017901.1_3102279_3102888_+,NA	NA|92aa|up_9|NZ_AP017901.1_3098154_3098430_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_AP017901.1_3098605_3098860_-	NA	NA|135aa|up_7|NZ_AP017901.1_3099007_3099412_+	NA	NA|64aa|up_6|NZ_AP017901.1_3099408_3099600_+	NA	NA|385aa|up_5|NZ_AP017901.1_3099798_3100953_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_AP017901.1_3101186_3101444_+	NA	NA|104aa|up_3|NZ_AP017901.1_3101548_3101860_+	NA	NA|203aa|up_2|NZ_AP017901.1_3102279_3102888_+	NA	NA|470aa|up_1|NZ_AP017901.1_3102958_3104368_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_AP017901.1_3104364_3105177_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_AP017901.1_3106706_3107968_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_AP017901.1_3109590_3109932_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_AP017901.1_3109932_3110949_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_AP017901.1_3110961_3112110_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_AP017901.1_3112205_3113333_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_AP017901.1_3113329_3114238_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_AP017901.1_3114218_3114929_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_AP017901.1_3114938_3115313_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_AP017901.1_3115309_3117748_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_AP017901.1_3117744_3118467_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	11	3108045-3109542	3,8,4	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	35,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	20,20,20	20	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|85aa|up_9|NZ_AP017901.1_3098605_3098860_-,NA|135aa|up_8|NZ_AP017901.1_3099007_3099412_+,NA|64aa|up_7|NZ_AP017901.1_3099408_3099600_+,NA|86aa|up_5|NZ_AP017901.1_3101186_3101444_+,NA|104aa|up_4|NZ_AP017901.1_3101548_3101860_+,NA|203aa|up_3|NZ_AP017901.1_3102279_3102888_+,NA	NA|85aa|up_9|NZ_AP017901.1_3098605_3098860_-	NA	NA|135aa|up_8|NZ_AP017901.1_3099007_3099412_+	NA	NA|64aa|up_7|NZ_AP017901.1_3099408_3099600_+	NA	NA|385aa|up_6|NZ_AP017901.1_3099798_3100953_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_AP017901.1_3101186_3101444_+	NA	NA|104aa|up_4|NZ_AP017901.1_3101548_3101860_+	NA	NA|203aa|up_3|NZ_AP017901.1_3102279_3102888_+	NA	NA|470aa|up_2|NZ_AP017901.1_3102958_3104368_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_AP017901.1_3104364_3105177_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_AP017901.1_3106706_3107968_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_AP017901.1_3109590_3109932_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_AP017901.1_3109932_3110949_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_AP017901.1_3110961_3112110_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_AP017901.1_3112205_3113333_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_AP017901.1_3113329_3114238_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_AP017901.1_3114218_3114929_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_AP017901.1_3114938_3115313_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_AP017901.1_3115309_3117748_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_AP017901.1_3117744_3118467_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_AP017901.1_3118866_3119412_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	12	3734662-3735341	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	CCGCCGNNNCCNCCGTNGCCGCC	23	0	0	NA	NA	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA,NA	NA|147aa|up_9|NZ_AP017901.1_3713481_3713922_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_AP017901.1_3713955_3714825_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_AP017901.1_3714845_3715856_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_6|NZ_AP017901.1_3716128_3716773_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_AP017901.1_3716839_3718069_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_AP017901.1_3718351_3719701_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_AP017901.1_3719712_3720852_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_AP017901.1_3720848_3721580_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3114aa|up_1|NZ_AP017901.1_3721588_3730930_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NZ_AP017901.1_3730978_3731995_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|98aa|down_0|NZ_AP017901.1_3737251_3737545_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_1|NZ_AP017901.1_3737541_3738387_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_2|NZ_AP017901.1_3738510_3738786_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_3|NZ_AP017901.1_3738782_3739040_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_4|NZ_AP017901.1_3739081_3740272_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|123aa|down_5|NZ_AP017901.1_3740388_3740757_+	pfam00498, FHA, FHA domain	NA|184aa|down_6|NZ_AP017901.1_3740753_3741305_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|194aa|down_7|NZ_AP017901.1_3741311_3741893_-	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|123aa|down_8|NZ_AP017901.1_3741873_3742242_-	pfam05331, DUF742, Protein of unknown function (DUF742)	NA|119aa|down_9|NZ_AP017901.1_3742219_3742576_-	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	13	3814454-3814543	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|77aa|up_7|NZ_AP017901.1_3807848_3808079_+,NA|121aa|up_6|NZ_AP017901.1_3808182_3808545_-,NA|73aa|up_2|NZ_AP017901.1_3812519_3812738_-,NA|121aa|down_0|NZ_AP017901.1_3815528_3815891_-,NA|52aa|down_2|NZ_AP017901.1_3817732_3817888_-,NA|52aa|down_3|NZ_AP017901.1_3817912_3818068_-,NA|238aa|down_6|NZ_AP017901.1_3822103_3822817_-	NA|169aa|up_9|NZ_AP017901.1_3806159_3806666_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|409aa|up_8|NZ_AP017901.1_3806662_3807889_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_7|NZ_AP017901.1_3807848_3808079_+	NA	NA|121aa|up_6|NZ_AP017901.1_3808182_3808545_-	NA	NA|177aa|up_5|NZ_AP017901.1_3808707_3809238_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|177aa|up_4|NZ_AP017901.1_3809504_3810035_+	pfam00823, PPE, PPE family	NA|725aa|up_3|NZ_AP017901.1_3810352_3812527_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|73aa|up_2|NZ_AP017901.1_3812519_3812738_-	NA	NA|100aa|up_1|NZ_AP017901.1_3813232_3813532_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_AP017901.1_3813617_3814160_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_AP017901.1_3815528_3815891_-	NA	NA|179aa|down_1|NZ_AP017901.1_3816053_3816590_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_AP017901.1_3817732_3817888_-	NA	NA|52aa|down_3|NZ_AP017901.1_3817912_3818068_-	NA	NA|461aa|down_4|NZ_AP017901.1_3819260_3820643_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_AP017901.1_3820680_3822102_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_AP017901.1_3822103_3822817_-	NA	NA|285aa|down_7|NZ_AP017901.1_3822827_3823682_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_AP017901.1_3823903_3825778_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_AP017901.1_3825799_3826276_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	14	3912190-3913835	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	GGCGGCAACGGCGGCACCGGCGG	23	12	194	3912414-3912435|3912414-3912435|3912414-3912435|3912414-3912435|3912414-3912435|3912414-3912435|3912414-3912435|3912414-3912435|3912414-3912435|3912585-3912606|3912585-3912606|3912585-3912606|3912585-3912606|3912585-3912606|3912585-3912606|3912585-3912606|3912630-3912648|3912630-3912648|3912630-3912648|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912780-3912801|3912825-3912840|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913107-3913128|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913191-3913218|3913365-3913380|3913464-3913485|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913509-3913527|3913551-3913572|3913551-3913572|3913551-3913572|3913551-3913572|3913551-3913572|3913551-3913572|3913551-3913572|3913551-3913572|3913551-3913572|3913647-3913662	NZ_AP017901.1_336920-336899|NZ_AP017901.1_1209591-1209612|NZ_AP017901.1_1633892-1633871|NZ_AP017901.1_2413036-2413015|NZ_AP017901.1_3041433-3041454|NZ_AP017901.1_3899956-3899977|NZ_AP017901.1_3900142-3900163|NZ_AP017901.1_3901549-3901570|NZ_AP017901.1_4000352-4000331|NZ_AP017901.1_1146684-1146705|NZ_AP017901.1_3901330-3901351|NZ_AP017901.1_3902305-3902326|NZ_AP017901.1_3902950-3902971|NZ_AP017901.1_3903547-3903568|NZ_AP017901.1_3904162-3904183|NZ_AP017901.1_3904777-3904798|NZ_AP017901.1_2627538-2627520|NZ_AP017901.1_3104604-3104622|NZ_AP017901.1_3774401-3774383|NZ_AP017901.1_671493-671472|NZ_AP017901.1_1380966-1380945|NZ_AP017901.1_3896714-3896735|NZ_AP017901.1_333842-333821|NZ_AP017901.1_336836-336815|NZ_AP017901.1_339821-339800|NZ_AP017901.1_670590-670569|NZ_AP017901.1_670650-670629|NZ_AP017901.1_670659-670638|NZ_AP017901.1_670761-670740|NZ_AP017901.1_670770-670749|NZ_AP017901.1_835898-835919|NZ_AP017901.1_837346-837367|NZ_AP017901.1_838681-838702|NZ_AP017901.1_964440-964419|NZ_AP017901.1_1184389-1184368|NZ_AP017901.1_1615505-1615484|NZ_AP017901.1_1979612-1979591|NZ_AP017901.1_2049248-2049227|NZ_AP017901.1_2076552-2076531|NZ_AP017901.1_2077023-2077002|NZ_AP017901.1_2781877-2781856|NZ_AP017901.1_3732657-3732636|NZ_AP017901.1_3733797-3733776|NZ_AP017901.1_3733974-3733953|NZ_AP017901.1_3747613-3747634|NZ_AP017901.1_3769757-3769778|NZ_AP017901.1_3894719-3894740|NZ_AP017901.1_3894815-3894836|NZ_AP017901.1_3895820-3895841|NZ_AP017901.1_3895829-3895850|NZ_AP017901.1_3895838-3895859|NZ_AP017901.1_3896804-3896825|NZ_AP017901.1_3897491-3897512|NZ_AP017901.1_3910245-3910266|NZ_AP017901.1_3910590-3910611|NZ_AP017901.1_3910935-3910956|NZ_AP017901.1_3911280-3911301|NZ_AP017901.1_340136-340115|NZ_AP017901.1_340682-340661|NZ_AP017901.1_341027-341006|NZ_AP017901.1_838690-838711|NZ_AP017901.1_1087854-1087875|NZ_AP017901.1_1184674-1184653|NZ_AP017901.1_1186779-1186758|NZ_AP017901.1_1186788-1186767|NZ_AP017901.1_1186869-1186848|NZ_AP017901.1_1628274-1628253|NZ_AP017901.1_1628469-1628448|NZ_AP017901.1_1629195-1629174|NZ_AP017901.1_1629843-1629822|NZ_AP017901.1_1652975-1652954|NZ_AP017901.1_2681038-2681059|NZ_AP017901.1_2789339-2789318|NZ_AP017901.1_3732675-3732654|NZ_AP017901.1_3732708-3732687|NZ_AP017901.1_3732777-3732756|NZ_AP017901.1_3732903-3732882|NZ_AP017901.1_3734103-3734082|NZ_AP017901.1_3734568-3734547|NZ_AP017901.1_3746935-3746956|NZ_AP017901.1_3894806-3894827|NZ_AP017901.1_3896795-3896816|NZ_AP017901.1_3897620-3897641|NZ_AP017901.1_3905584-3905605|NZ_AP017901.1_3910356-3910377|NZ_AP017901.1_3910701-3910722|NZ_AP017901.1_3911046-3911067|NZ_AP017901.1_1078048-1078063|NZ_AP017901.1_365116-365137|NZ_AP017901.1_3905341-3905362|NZ_AP017901.1_338378-338357|NZ_AP017901.1_338831-338810|NZ_AP017901.1_670164-670143|NZ_AP017901.1_671382-671361|NZ_AP017901.1_1086759-1086780|NZ_AP017901.1_1187064-1187043|NZ_AP017901.1_1629129-1629108|NZ_AP017901.1_1629186-1629165|NZ_AP017901.1_3732041-3732020|NZ_AP017901.1_3732858-3732837|NZ_AP017901.1_3733206-3733185|NZ_AP017901.1_3747511-3747532|NZ_AP017901.1_3917336-3917363|NZ_AP017901.1_3918005-3918032|NZ_AP017901.1_365623-365650|NZ_AP017901.1_1628112-1628085|NZ_AP017901.1_1628121-1628094|NZ_AP017901.1_3747622-3747649|NZ_AP017901.1_3910254-3910281|NZ_AP017901.1_3910599-3910626|NZ_AP017901.1_3910944-3910971|NZ_AP017901.1_3911289-3911316|NZ_AP017901.1_3917180-3917207|NZ_AP017901.1_3917264-3917291|NZ_AP017901.1_3917273-3917300|NZ_AP017901.1_3917345-3917372|NZ_AP017901.1_3917849-3917876|NZ_AP017901.1_3917933-3917960|NZ_AP017901.1_3917942-3917969|NZ_AP017901.1_3918014-3918041|NZ_AP017901.1_3918086-3918113|NZ_AP017901.1_3918446-3918473|NZ_AP017901.1_3918530-3918557|NZ_AP017901.1_3918539-3918566|NZ_AP017901.1_3918566-3918593|NZ_AP017901.1_339023-338996|NZ_AP017901.1_365614-365641|NZ_AP017901.1_670659-670632|NZ_AP017901.1_671391-671364|NZ_AP017901.1_837346-837373|NZ_AP017901.1_1184389-1184362|NZ_AP017901.1_1185172-1185145|NZ_AP017901.1_1487593-1487566|NZ_AP017901.1_1629852-1629825|NZ_AP017901.1_1979612-1979585|NZ_AP017901.1_3732032-3732005|NZ_AP017901.1_3733260-3733233|NZ_AP017901.1_3747613-3747640|NZ_AP017901.1_3894806-3894833|NZ_AP017901.1_3895313-3895340|NZ_AP017901.1_3895820-3895847|NZ_AP017901.1_3895829-3895856|NZ_AP017901.1_3895838-3895865|NZ_AP017901.1_3898286-3898313|NZ_AP017901.1_3900535-3900562|NZ_AP017901.1_3901627-3901654|NZ_AP017901.1_3901645-3901672|NZ_AP017901.1_3910245-3910272|NZ_AP017901.1_3910263-3910290|NZ_AP017901.1_3910590-3910617|NZ_AP017901.1_3910608-3910635|NZ_AP017901.1_3910935-3910962|NZ_AP017901.1_3910953-3910980|NZ_AP017901.1_3911280-3911307|NZ_AP017901.1_3911298-3911325|NZ_AP017901.1_3912168-3912195|NZ_AP017901.1_3917171-3917198|NZ_AP017901.1_3917282-3917309|NZ_AP017901.1_3917840-3917867|NZ_AP017901.1_3918077-3918104|NZ_AP017901.1_3918437-3918464|NZ_AP017901.1_3918548-3918575|NZ_AP017901.1_3918557-3918584|NZ_AP017901.1_3918683-3918710|NZ_AP017901.1_4063414-4063441|NZ_AP017901.1_837379-837394|NZ_AP017901.1_3900553-3900574|NZ_AP017901.1_1185691-1185673|NZ_AP017901.1_1187415-1187397|NZ_AP017901.1_1380753-1380735|NZ_AP017901.1_3768881-3768899|NZ_AP017901.1_3901897-3901915|NZ_AP017901.1_3902542-3902560|NZ_AP017901.1_3903187-3903205|NZ_AP017901.1_3903784-3903802|NZ_AP017901.1_3904399-3904417|NZ_AP017901.1_3905014-3905032|NZ_AP017901.1_3910374-3910392|NZ_AP017901.1_3910719-3910737|NZ_AP017901.1_3911064-3911082|NZ_AP017901.1_3917441-3917459|NZ_AP017901.1_3917582-3917600|NZ_AP017901.1_3918182-3918200|NZ_AP017901.1_4006222-4006204|NZ_AP017901.1_2076714-2076693|NZ_AP017901.1_2946794-2946773|NZ_AP017901.1_3895304-3895325|NZ_AP017901.1_3902569-3902590|NZ_AP017901.1_3903214-3903235|NZ_AP017901.1_3903811-3903832|NZ_AP017901.1_3904426-3904447|NZ_AP017901.1_3905041-3905062|NZ_AP017901.1_3912159-3912180|NZ_AP017901.1_2716273-2716288	NA	35	35	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA,NA|280aa|down_4|NZ_AP017901.1_3922168_3923008_+	NA|255aa|up_9|NZ_AP017901.1_3887626_3888391_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_8|NZ_AP017901.1_3888616_3889570_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|NZ_AP017901.1_3889594_3889786_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_6|NZ_AP017901.1_3890000_3891203_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_5|NZ_AP017901.1_3891227_3892349_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_4|NZ_AP017901.1_3892419_3893928_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1414aa|up_3|NZ_AP017901.1_3894098_3898340_+	pfam00934, PE, PE family	NA|2378aa|up_2|NZ_AP017901.1_3898591_3905725_+	pfam00934, PE, PE family	NA|516aa|up_1|NZ_AP017901.1_3905891_3907439_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_0|NZ_AP017901.1_3907435_3908272_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|down_0|NZ_AP017901.1_3914006_3914663_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|1431aa|down_1|NZ_AP017901.1_3914708_3919001_+	pfam00934, PE, PE family	NA|549aa|down_2|NZ_AP017901.1_3919561_3921208_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_3|NZ_AP017901.1_3921281_3922073_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_4|NZ_AP017901.1_3922168_3923008_+	NA	NA|399aa|down_5|NZ_AP017901.1_3923062_3924259_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_6|NZ_AP017901.1_3924287_3924998_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_7|NZ_AP017901.1_3925062_3926106_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_8|NZ_AP017901.1_3926258_3927170_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_9|NZ_AP017901.1_3927185_3928250_+	PRK07937, PRK07937, lipid-transfer protein; Provisional
GCF_002356015.1_ASM235601v1	NZ_AP017901	Mycobacterium tuberculosis strain NCGM946K2	15	4079630-4079718	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh	NA|257aa|up_6|NZ_AP017901.1_4070216_4070987_-,NA|233aa|up_0|NZ_AP017901.1_4078734_4079433_-,NA|126aa|down_6|NZ_AP017901.1_4084953_4085331_+	NA|388aa|up_9|NZ_AP017901.1_4065887_4067051_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_AP017901.1_4067047_4068100_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_AP017901.1_4068598_4069462_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_AP017901.1_4070216_4070987_-	NA	NA|549aa|up_5|NZ_AP017901.1_4070983_4072630_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_AP017901.1_4072626_4073490_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_AP017901.1_4073482_4074409_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_AP017901.1_4074410_4076036_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_AP017901.1_4076743_4078699_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_AP017901.1_4078734_4079433_-	NA	NA|173aa|down_0|NZ_AP017901.1_4079778_4080297_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_AP017901.1_4080297_4081281_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_AP017901.1_4081273_4082467_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_AP017901.1_4082472_4083294_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_AP017901.1_4083425_4084109_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_AP017901.1_4084108_4084846_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_AP017901.1_4084953_4085331_+	NA	NA|225aa|down_7|NZ_AP017901.1_4085429_4086104_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_AP017901.1_4086209_4087004_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_AP017901.1_4087010_4087466_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
